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rangi: clear used[] if the matching test fails in kavosh
2012-10-18
Ali Gholami Rudi
rangi: c
l
ea
r
used[] if the mat
c
hing test fai
l
s in
k
a
v
osh
commit
|
commitdiff
|
tree
2012-10-17
A
li Gholam
i
Rud
i
rang
i
: add -v to print the
mot
i
fs as they ar
e
detected
commit
|
commitdiff
|
tree
2012-10-17
Ali Gh
o
lami Ru
d
i
ra
n
g
i: per
f
orm the
m
a
t
ching test b
a
sed on th
e
# of
.
.
.
commit
|
commitdiff
|
tree
2012-10-17
Ali Gholami Rudi
R
EADM
E
: b
r
i
efly
i
n
troduce progr
a
ms beside
s
rangi
commit
|
commitdiff
|
tree
2012-10-17
Al
i
Gholami Rudi
R
EADME: docume
n
t the new file form
a
t and mkrangi
.
sh
commit
|
commitdiff
|
tree
2012-10-17
Ali
G
holami Ru
d
i
m
k
rangi
.
sh:
create rangi inp
u
ts from biol
o
gica
l
fi
l
es
commit
|
commitdiff
|
tree
2012-10-17
Ali Gholam
i
Rudi
rangi: ski
p
roots wi
t
hout nsub colors in their n
e
ighborhood
commit
|
commitdiff
|
tree
2012-10-16
Ali
Gholami Rud
i
test: dot
f
iles are no longer suppo
r
ted
commit
|
commitdiff
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tree
2012-10-16
Ali
Gho
l
ami Rudi
bl
2
exp: extract bla
s
t e
-
value fro
m
blastp ou
t
put
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholam
i
Rudi
fa
s
tafilt: f
i
l
t
er fasta files based on its complexes
commit
|
commitdiff
|
tree
2012-10-16
Ali Ghol
a
mi Rudi
meval: count the complexe
s
con
t
aini
n
g
a moti
f
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
rangi: -m uses matching to identify infeas
i
b
le subgr
a
phs
commit
|
commitdiff
|
tree
2012-10-16
A
li Gholami Rudi
proc: fix nsub_
d
etect() for multiple threads
commit
|
commitdiff
|
tree
2012-10-16
Ali Ghola
m
i
R
u
d
i
conv: use a hash t
a
ble for storin
g
p
r
otein names
commit
|
commitdiff
|
tree
2012-10-16
Ali Gholami Rudi
conv: switching to gram
o
fon
e
-style int
e
r
a
ction files
commit
|
commitdiff
|
tree
2012-10-16
A
li Gholami Rudi
conv: fix blast thr
e
s
ho
l
d check
i
ng
commit
|
commitdiff
|
tree
2012-10-10
A
l
i
G
ho
l
ami Rudi
rangi: i
g
n
o
r
e
nsub
_
detect(
)
with
-1 opti
o
n
commit
|
commitdiff
|
tree
2012-10-10
Ali Gholami Rudi
rangi: early motif detection heuristic
commit
|
commitdiff
|
tree
2012-10-07
A
l
i Gholami Rudi
rangi: ma
k
e the -1 argument jump sizes wi
t
h
a
t
least
.
.
.
commit
|
commitdiff
|
tree
2012-10-03
Ali Gh
o
lami Rudi
r
a
n
gi: a
d
d -e to perfo
r
m
ex
h
austive search
commit
|
commitdiff
|
tree
2012-10-03
Ali Gholami Rudi
rang
i
: perf
o
rm the ma
t
ching
onl
y
on val
i
d nodes
commit
|
commitdiff
|
tree
2012-09-30
Ali G
h
o
l
ami R
u
d
i
rangi: use fanmo
d
by default
commit
|
commitdiff
|
tree
2012-09-29
Ali Gholami Rudi
rangi: add
-f
to use f
a
nmod instea
d
of
kavosh
commit
|
commitdiff
|
tree
2012-09-29
Ali Ghola
m
i
Rudi
con
v
: the f
i
nal arg
u
ment
s
of conv a
r
e the query prote
i
ns
commit
|
commitdiff
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tree
2012-09-29
Ali
Gh
o
lami R
u
di
adopt a new fil
e
form
a
t to r
e
port motif prot
e
ins
commit
|
commitdiff
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tree
2012-09-29
Ali Gholami
R
udi
Make
f
i
le: changing
r
angi
.
h
should force a
rebu
i
ld
commit
|
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2012-09-28
Ali Gholami
Rudi
rangi-
0
.
0
commit
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