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added serverSideCursors and blockIterators options
2009-09-10
Christopher Le
e
added
se
r
v
e
rSi
d
eCursors and blockIt
e
r
a
to
r
s options
commit
|
commitdiff
|
tree
2009-09-10
Christopher
Lee
expanded random value order by
t
est
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher L
e
e
Mer
g
e co
m
m
it 'remotes/mk
s
zuba/sqltable
_
o
r
derby' in
t
o
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
added SQ
L
Table_Test
.
test_orderBy()
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
he
r
Lee
updated BlockGenerator to work with g
e
ner
a
lize
d
o
r
d
erBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
stopher L
e
e
generalize BlockGenerator to
wo
r
k w
i
t
h
str
i
n
g
keys
commit
|
commitdiff
|
tree
2009-09-09
Christopher L
e
e
fixed small synta
x
error
commit
|
commitdiff
|
tree
2009-09-09
C
h
ris
t
opher Lee
adde
d
CursorCloser() m
e
chanism
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
er Lee
BlockG
e
ner
a
tor now working
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
her Lee
fixes to
prevent
unnecessary inv
o
cati
o
n
o
f cmp()
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
pher Le
e
fixes to p
r
e
vent
unnec
e
ssary inv
o
cation of it
e
r
()
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istopher
L
ee
m
o
r
e
t
ests
f
or
unwanted iteration
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher Lee
basic call for block
generator based iter
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
ad
d
e
d
test for unwan
t
e
d
iteration
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
p
h
er Lee
fir
s
t implementation of
BlockGenerator iteration me
c
hanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
make itervalues / iteritems use
s
a
me orderBy rules
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
generalized
i
ter_keys(), added orderBy support
commit
|
commitdiff
|
tree
2009-09-08
C
h
ristopher Lee
created MySQLServerInfo
c
lass that uses SSCursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
added
useStreaming option to mysql_connect()
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
fixed new_cursor() to propagate arraysiz
e
setting properly
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r
Lee
added test for
b
ug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
fixed bu
g
84
commit
|
commitdiff
|
tree
2009-09-05
C
h
r
i
s
toph
e
r Le
e
added test for Gr
a
phView ke
y
s / l
e
n only reflecti
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added inverse sup
p
o
rt for Gra
p
hView
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
st
o
ph
e
r L
e
e
added test for
G
r
aphView
i
nver
s
e and improved MapVie
w
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er Lee
mak
e
GraphView rai
s
e KeyError if key ha
s
no rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added tests for
MapVi
e
w
i
terators and
len
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
a
v
oid poss
i
ble
i
ter / keys infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
i
s
topher Lee
added lots of tests
f
or
g
r
aphs w
i
th nodes inst
e
ad
of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Le
e
corrected t
h
e SQLGrap
h
iterato
r
methods and improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher
L
ee
t
e
stut
i
l n
e
ede
d
new
name of
g
et_name_cu
r
sor()
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
made get_nam
e
_curs
o
r
(
) use DB
S
erverI
n
fo
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
op
h
er Lee
added iteratio
n
test to graph_t
e
st
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er L
e
e
use new iter
_
keys() method
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added better i
t
e
r me
t
hod
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
Merge commit 'remotes/
c
tb/xmlrpc_patches
'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
Me
r
g
e
commit 'rem
o
tes/mkszu
b
a/f
i
nk'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
re
m
ove
d
t
ests/oldtests/nlms
a
_dm2_megatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
op
h
er
Lee
Merge commit 'rem
o
tes/mk
s
z
u
b
a
/docf
i
x
e
s'
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Le
e
M
e
rge commit 're
m
otes/mkszuba/c
l
eanup'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
st
o
pher Lee
Mer
g
e commit 're
m
otes/
m
k
s
zuba
/
bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
correcte
d
Classic
U
npickler
r
e
ference to point to
classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
isto
p
her
Lee
re
m
o
v
ed unused s
h
elve import
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
r
e
mo
v
ed unused
i
mport item
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
Me
r
ge br
a
n
c
h 'tutoria
l
'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added argument to m
a
k
e MapView inver
s
e able to
r
econstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
added test of len
(
)
m
e
t
h
od for
S
QLTable
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
a
dded db tu
t
orial (mapping) back to guidelist table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher
L
e
e
mapping tut
o
rial just co
v
ers map
p
ings, so rem
o
ved re
f
erence
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
toph
e
r
Le
e
add
e
d MapView inver
s
e example to tut
o
rial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added Ma
p
Vi
e
w
d
ocs
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stoph
e
r
L
ee
added te
s
t f
o
r tr
a
pping non-invert
i
ble
MapView
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
sto
p
her
L
ee
added test f
o
r __
i
n
vert__ method
to MapV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
ad
d
ed __in
v
ert__ method to M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
added material o
n
S
Q
L M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
C
h
rist
o
pher
Lee
a
dded
s
e
c
tions on mapping to
d
isk /
w
orldbase
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
changed titl
e
of xmlrpc
t
utorial
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
m
ino
r
f
ixes t
o
gene
tutorial
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
moved material ou
t
of wo
r
ldba
s
e
.
r
st to
w
o
r
l
d
base2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
C
hristophe
r
L
e
e
separate tutorial on saving
d
ata to
w
orld
b
as
e
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
er Le
e
moved schem
a
ma
t
erial
to worldbase
2
.
rst tu
t
or
i
al
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
ophe
r
Lee
a
d
ded worldb
a
se security war
n
i
ng
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stophe
r
Lee
more revisions about downloadin
g
tutori
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
e
e
r
e
v
i
sions to
d
o
wnl
o
ad=True sect
i
on
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
s
toph
e
r Lee
added dependency se
c
tion
i
n worldbase
.
r
s
t tu
t
orial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
pher
Lee
added worldbas
e
.
dir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r L
e
e
added intro sectio
n
to worldbase
.
rst tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
isto
p
her Lee
a
d
d
e
d Purpo
s
e
t
o
a
lig
n
m
ent
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stop
h
er Lee
more little cha
n
ges to an
n
ot
a
tion2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
adde
d
Purpo
s
e and
i
ntro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher L
e
e
moved new
b
asic tut
o
rials
t
o top of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
minor
f
ix to db_basic
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Lee
upd
a
tes to reference/sq
l
graph
.
rst doc
s
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
a
d
d
e
d
SQL saving section
to db tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
ba
s
ic da
t
a
b
a
s
e
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added back __len__() to SQLT
a
bleB
a
se
.
How in he
c
k
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher L
e
e
added section o
n
PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher Le
e
ad
d
ed section on pluggi
n
g in your own
s
equen
c
e parser
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
m
oved old material out
t
o compgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r Lee
s
o
me mi
n
or sequence tutorial revisions
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
added tutorial section on
ac
c
essing sequence
d
atabas
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher
Lee
spl
i
t u
p
bull
e
t
points to
i
ntegr
a
te in
t
o the cod
e
example
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher Lee
revis
e
d
sequence tutor
i
a
l
intro (
f
ir
s
t pa
r
t
)
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
h
er Lee
Merge commit 'remotes/ct
b
/xmlrpc_tut
o
rial' into t
u
tori
a
l
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
Merge comm
i
t 'rem
o
tes/ctb/doc_a
l
ignme
n
t
'
into
tut
o
rial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
revised
gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christophe
r
Lee
added GFF3
e
xamp
l
e of gene building
commit
|
commitdiff
|
tree
2009-09-01
Christophe
r
L
ee
Mer
g
e c
o
mmit 'remotes/
m
ks
z
u
b
a
/x
m
l
rpc_tutorial'
into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Ch
r
istopher
L
ee
Merge
c
o
m
mit 'remotes/ct
b
/d
o
c_ann
o
tations' i
n
to t
u
tor
i
al
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
extracted materia
l
f
o
r
separate datab
a
se t
u
tori
a
l
commit
|
commitdiff
|
tree
2009-08-29
Christopher Le
e
remove
d
un
n
ece
s
sar
y
stat and s
h
util impor
t
fro
m
setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christopher
L
ee
fixed easy_install bug by protecting coordinator
.
Resou
r
ceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
topher Lee
f
i
x
ed blast_tes
t
:
renamed test_seq
_
wit
h
out_
d
b
(
) to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher L
e
e
Merge
commit
'
re
m
otes
/
ctb/minor_fix
e
s' into mi
n
or_fixes
commit
|
commitdiff
|
tree
2009-08-04
Christoph
e
r L
e
e
fix port passing in tes
t
ut
i
l
.
TestXMLRPCServer
commit
|
commitdiff
|
tree
2009-08-04
Christ
o
pher Le
e
use pair
_
iden
t
i
t
y_tupl
e
()
for blast_te
s
t formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher Lee
added
B
lastB
a
se
.
tearDown()
t
o close
s
eqdbs
a
s the
y
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
C
h
ri
s
topher Lee
Merg
e
commit 'rem
o
tes/mksz
u
ba/doc_make
'
commit
|
commitdiff
|
tree
2009-08-04
C
hristopher Lee
M
e
r
g
e
commit 're
m
otes/mkszuba/rpm
'
commit
|
commitdiff
|
tree
2009-07-29
C
hristopher Lee
got rid of Bla
s
tMapping
.
war
n
_about_se
l
f
_matche
s
()
commit
|
commitdiff
|
tree
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