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added serverSideCursors and blockIterators options
2009-09-10
Ch
r
i
s
tophe
r
Lee
a
d
ded serverSideCursors and blockIterators options
commit
|
commitdiff
|
tree
2009-09-10
Christo
p
her Lee
exp
a
n
de
d
rand
o
m value o
r
der by test
commit
|
commitdiff
|
tree
2009-09-09
Christopher
Lee
M
e
rg
e
commit '
r
e
mo
t
es/mk
s
zuba/sql
t
able_orderby'
into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
is
t
opher
Lee
added
S
QLTable_Test
.
test_or
d
erBy()
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
u
p
dated BlockGene
r
ator to
w
ork with generalized orderBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
t
o
pher
Lee
gener
a
lize BlockGene
r
ator to work
w
ith string keys
commit
|
commitdiff
|
tree
2009-09-09
C
hristophe
r
Lee
fixe
d
small syntax error
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher Lee
added C
u
rsorClose
r
() mechanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
B
l
ockGenera
t
or now
w
orking
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
her Lee
fixes to prevent unnecessary invocatio
n
of cmp()
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
fixes to prevent unneces
s
ary invocatio
n
o
f ite
r
()
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristoph
e
r
Lee
more te
s
t
s
f
or unwant
e
d
i
t
era
t
ion
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
her Le
e
ba
s
ic call for
bloc
k
g
enerat
o
r
based ite
r
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
a
d
ded test
f
o
r
unw
a
nted iter
a
tio
n
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
f
i
rst imp
l
emen
t
ation of
Bl
o
ckGenerator iteration
me
c
hanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
make iterv
a
lues / ite
r
i
tems use
s
a
me orderBy
rule
s
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
tophe
r
Lee
g
e
neralize
d
i
ter_key
s
(
)
, added orderBy suppor
t
commit
|
commitdiff
|
tree
2009-09-08
C
hr
i
st
o
pher Le
e
c
r
eated MySQLServerInfo
clas
s
tha
t
uses S
S
Cursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christop
h
er Lee
a
d
ded
u
seStream
i
ng option to mys
q
l_connec
t
()
commit
|
commitdiff
|
tree
2009-09-08
C
hristo
p
her Lee
fixed new_cursor() to propagate
a
rraysiz
e
setting
pr
o
p
erly
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added
t
est f
o
r bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
f
ixed bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added test
f
or Gr
a
phView keys / len only reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
added inverse support f
o
r GraphView
commit
|
commitdiff
|
tree
2009-09-05
Christopher
Lee
added test f
o
r Gr
a
p
hView
i
nverse and improv
e
d M
a
pV
i
e
w
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
m
a
ke GraphView raise KeyErr
o
r if
k
ey has no rows i
n
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
her Lee
add
e
d tests for MapView itera
t
o
rs and len
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r
Lee
a
void pos
s
ibl
e
i
t
er /
k
e
ys infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
h
er Lee
added lots of tests for grap
h
s with nodes in
s
tead of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristophe
r
L
ee
correcte
d
the SQL
G
raph it
e
rator methods and improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
o
pher
Lee
testutil neede
d
new
n
ame of get_name_cur
s
or
(
)
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
made get_n
a
m
e
_curso
r
() use
DBServerInf
o
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher L
e
e
added
ite
r
ation
t
est
t
o
g
r
aph_t
e
st
.
py
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Lee
use new iter_
k
eys() meth
o
d
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
is
t
ophe
r
L
ee
added
b
et
t
er iter method
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merg
e
commit 'r
e
motes/
c
tb
/
x
m
lrp
c
_p
a
tc
h
es'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge commit 'remotes/mkszub
a
/f
i
n
k'
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
removed tests/oldtests/n
l
msa_dm2_megatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
Me
r
ge c
o
mmit
'remotes/
m
k
s
zuba
/
docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
M
e
rge commit 'r
e
motes/
m
k
szuba/cleanup'
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
Merge commit
'remotes/
m
kszuba/bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
corrected Clas
s
i
c
Un
p
i
ckler
r
eference to point to clas
s
util
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
is
t
opher L
e
e
remo
v
ed unused she
l
ve impo
r
t
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
removed unused import item
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
Merge branch '
t
uto
r
ial'
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
i
stopher Lee
add
e
d
a
rgument
t
o make MapView inverse able t
o
reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristoph
e
r Lee
ad
d
e
d
t
e
s
t of len() method for
SQLT
a
ble
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
added db tutori
a
l (mapping) back
t
o
guid
e
li
s
t table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
mapping tutor
i
al
just co
v
ers mapp
i
n
g
s, so removed re
f
e
r
ence
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
added Ma
p
V
iew
i
nverse example t
o
tut
o
rial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
add
e
d Map
V
iew
docs
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added tes
t
for trapping non-inv
e
rtible
Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher
L
ee
added test for __inver
t
__ metho
d
to Ma
p
View
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
st
o
pher Le
e
added _
_
invert__ method
to
MapVie
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
ed materi
a
l on S
Q
L MapView
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher L
e
e
adde
d
s
ections on
m
app
i
ng
t
o disk / worldbase
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
change
d
title
o
f xmlrpc tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
minor fixes
to gene tut
o
r
ial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
moved mater
i
al out of
w
o
rldbase
.
rst to worldba
s
e2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
separate tutorial on sav
i
ng
d
a
t
a to
w
orldbase
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher L
e
e
mo
v
ed sch
e
ma mat
e
rial to worldbase2
.
r
s
t tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worl
d
base se
c
u
r
ity warning
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher Lee
mor
e
revisions ab
o
ut
downloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Le
e
r
evisions to download=True se
c
tion
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added
d
epend
e
ncy
section in worldb
a
se
.
rst tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher L
e
e
add
e
d worldbase
.
d
ir() tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
is
t
opher Lee
added intro section to worl
d
base
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
is
t
opher Lee
added Purpose to align
m
ent
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
more little
c
h
anges
to annotation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added Purpose and intro to annotation
s
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stophe
r
Lee
moved new bas
i
c
t
utorials to top of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
m
i
nor
f
ix
t
o db_basic
.
r
st
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
updates to reference/sqlgraph
.
rst
do
c
s
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
topher Lee
added SQL sav
i
n
g section
t
o db tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristophe
r
Lee
basic da
t
ab
a
s
e
tutoria
l
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
opher Lee
added back __l
e
n
__()
t
o SQLTa
b
le
B
ase
.
How
in h
e
ck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
a
dded
s
ection on PrefixUnionD
i
ct
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristopher Lee
ad
d
ed section on
plug
g
ing
in your own sequenc
e
parser
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher Lee
moved old material out to
c
ompgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
ee
some
m
inor sequence tutoria
l
revisi
o
ns
commit
|
commitdiff
|
tree
2009-09-02
Christophe
r
L
ee
add
e
d tut
o
rial sec
t
ion on a
c
c
e
ssing
s
equenc
e
database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
s
p
lit up bullet point
s
to integrate into the c
o
de example
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r Lee
r
e
vis
e
d se
q
uence tutorial intro (firs
t
part)
commit
|
commitdiff
|
tree
2009-09-02
C
hris
t
ophe
r
Lee
Merge com
m
i
t
'
remotes/ctb/xml
r
pc_t
u
torial'
i
nto tut
o
ri
a
l
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stop
h
er Lee
M
e
rge commit 'remotes/ctb/doc_al
i
gnment'
into tutori
a
l
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
r
evi
s
ed gff3
c
o
d
e
commit
|
commitdiff
|
tree
2009-09-02
C
hr
i
stopher Lee
added GFF3 example of
gene building
commit
|
commitdiff
|
tree
2009-09-01
Christ
o
ph
e
r Lee
M
erge commit 'rem
o
t
es/mk
s
zub
a
/xmlrpc
_
tut
o
rial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Ch
r
istopher Lee
Me
r
ge commit 'remo
t
es/ctb/
d
o
c
_annota
t
ions'
i
nto tu
t
orial
commit
|
commitdiff
|
tree
2009-09-01
Chri
s
topher Lee
extract
e
d mat
e
rial f
o
r separate d
a
tabase tutorial
commit
|
commitdiff
|
tree
2009-08-29
C
hristophe
r
L
e
e
removed u
n
n
ec
e
ssary stat and shutil import f
r
om s
e
tup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christop
h
er
L
e
e
fixed easy_install bug by protecting coordinat
o
r
.
ResourceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
f
i
xed blast_test: ren
a
med
test_seq_without_db() t
o
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
is
t
op
h
er Le
e
Merge
c
ommit 'remot
e
s/ctb/minor_fixes' in
t
o
m
inor_f
i
xes
commit
|
commitdiff
|
tree
2009-08-04
Christophe
r
Lee
fix port passing in
t
estuti
l
.
TestXMLRPCServer
commit
|
commitdiff
|
tree
2009-08-04
Christ
o
pher
Lee
use
p
air_
i
dentity_tuple
(
)
f
o
r
bla
s
t_test form
a
tting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christ
o
pher Lee
added BlastBas
e
.
tearDown() to clos
e
seqdbs as th
e
y
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merge com
m
it '
r
e
m
otes/mkszuba/doc
_
make'
commit
|
commitdiff
|
tree
2009-08-04
Christop
h
er Lee
M
erge c
o
mmi
t
'remote
s
/mkszuba/rpm'
commit
|
commitdiff
|
tree
2009-07-29
Ch
r
isto
p
her Lee
got rid of
B
l
a
stMappi
n
g
.
war
n
_a
b
out_self_mat
c
hes()
commit
|
commitdiff
|
tree
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