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added serverSideCursors and blockIterators options
2009-09-10
Ch
r
i
sto
p
he
r
Lee
add
e
d
s
erverSideCursors an
d
blockIterators opti
o
ns
commit
|
commitdiff
|
tree
2009-09-10
C
h
ristop
h
e
r Lee
e
x
panded r
a
ndom value order by test
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
pher Lee
Me
r
ge commit '
r
emotes/mkszuba/sqlt
a
bl
e
_
o
rderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
oph
e
r
L
ee
added SQL
T
ab
l
e_T
e
st
.
te
s
t_
o
rderBy()
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
updated Blo
c
kGenera
t
or to work with
ge
n
eralize
d
orderBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
generalize BlockGenerator to work with string keys
commit
|
commitdiff
|
tree
2009-09-09
C
hrist
o
pher Le
e
fixed
small
s
yntax
e
rr
o
r
commit
|
commitdiff
|
tree
2009-09-09
Christopher Le
e
a
dded Cur
s
o
r
C
loser() mecha
n
is
m
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
toph
e
r
Le
e
Block
G
ener
a
t
o
r now working
commit
|
commitdiff
|
tree
2009-09-09
C
hr
i
s
t
opher Lee
f
i
xes to prevent u
n
necessary invoc
a
ti
o
n
o
f
cmp()
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
fixes to
prevent un
n
e
cessary invocation of it
e
r()
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
phe
r
L
e
e
mo
r
e
tests
f
o
r
un
w
anted iterat
i
on
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher
Lee
basic
call fo
r
block g
e
n
e
ra
t
o
r
based
i
ter
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
add
e
d
tes
t
f
or unwanted iteration
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher Lee
first im
p
lementation of BlockGenerator
ite
r
at
i
on mecha
n
ism
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
m
a
ke i
t
e
r
va
l
ues /
i
teritems u
s
e
same orderBy r
u
les
commit
|
commitdiff
|
tree
2009-09-09
C
h
r
istopher Le
e
g
eneral
i
zed iter_keys(), added orderBy support
commit
|
commitdiff
|
tree
2009-09-08
Christopher
L
ee
cre
a
ted MySQLServe
r
Info class that
uses SSCursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
added useS
t
reaming option
t
o mysql_c
o
nn
e
ct()
commit
|
commitdiff
|
tree
2009-09-08
C
h
r
i
s
t
op
h
er
Lee
fixed new
_
cu
r
sor(
)
to propagate arraysize s
e
t
ting
p
r
o
perly
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
ist
o
pher
Lee
a
d
ded test for b
u
g 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
fixed bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added t
e
st for GraphVie
w
k
e
ys
/
len only reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher Le
e
added inver
s
e
s
u
ppor
t
f
or GraphVie
w
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
o
pher Lee
ad
d
ed
t
e
s
t
for GraphView inverse an
d
improved M
a
pView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
make Gr
a
p
h
V
i
ew raise K
e
y
E
rror if
k
e
y has no ro
w
s
in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
a
d
ded tests for MapView iterators
a
n
d l
e
n
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
avoid p
o
ssible
i
ter / keys infinite lo
o
p
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristophe
r
L
e
e
a
dded lots of tests for gr
a
phs with nodes inste
a
d of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
correcte
d
the SQ
L
G
r
aph iterat
o
r methods and improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
testutil
ne
e
d
ed new name of get_name_cursor()
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher Le
e
m
ade get_name_cursor() use DBS
e
rverInf
o
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
a
d
ded iterati
o
n te
s
t to graph_test
.
p
y
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
oph
e
r Lee
use new iter_
k
eys() method
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
her Lee
a
dded better iter method
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge commit 'remotes
/
ctb/xmlrpc_patc
h
es'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge com
m
it 'remotes/mkszuba/fin
k
'
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
p
her Lee
removed tests/oldte
s
t
s/nlmsa_dm2_megatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
istopher Lee
M
erg
e
com
m
it 'remotes/mk
s
zuba/docfix
e
s'
commit
|
commitdiff
|
tree
2009-09-04
C
hri
s
topher
L
ee
Mer
g
e
c
omm
i
t
'remotes/mkszuba/clea
n
up'
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
Lee
Mer
g
e comm
i
t 'remotes/mkszuba/b
s
ddb_
b
s
dd
b
3
'
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
corrected ClassicUnpickle
r
r
eference to point to classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher
Le
e
re
m
oved unused shelve import
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
s
t
o
pher Lee
r
emoved unus
e
d
i
mport it
e
m
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
M
erge bra
n
ch 'tutor
i
al'
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
ist
o
phe
r
Lee
added arg
u
ment to make MapView inve
r
s
e
able to reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added test of len()
meth
o
d for S
Q
LTable
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added db tutor
i
al (mappi
n
g) back to
guidelist table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Lee
mappin
g
tu
t
orial
ju
s
t covers mappings, so r
e
moved refe
r
ence
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
added
MapView
i
n
v
erse example to tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
added MapVi
e
w
d
ocs
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
added test for tra
p
ping non
-
i
n
v
ertible MapView
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
added test
for __inver
t
__ method t
o
MapView
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
isto
p
her Lee
added
__in
v
ert
_
_ method to Map
V
i
e
w
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
added material o
n
SQL MapVie
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
added se
c
tions on map
p
ing to disk / worldbase
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
ist
o
phe
r
Lee
changed title of xmlrpc tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
phe
r
Lee
m
i
nor fixes to gene tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
moved material out o
f
worl
d
b
a
s
e
.
rst to w
o
r
ldbase2
.
rs
t
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
op
h
e
r Lee
separate
t
utorial
o
n
s
aving
data to
worldbase
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher
Lee
moved
sc
h
ema
material to worldbase
2
.
rst tutori
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worldbas
e
se
c
urity war
n
ing
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
more revisions
a
bou
t
downloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
rev
i
sions
t
o
d
o
w
nlo
a
d=True section
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
adde
d
depe
n
dency section
i
n wo
r
ldbase
.
r
s
t t
u
torial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stoph
e
r
L
ee
add
e
d
worldbase
.
dir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
p
her Lee
adde
d
intro section
t
o worl
d
base
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
a
d
de
d
Pu
r
pose to ali
g
nme
n
t
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
pher
Lee
more lit
t
le changes t
o
annota
t
io
n
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
ad
d
ed Purpose an
d
intro to annotatio
n
s2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
i
s
top
h
er Lee
moved new basi
c
tutorials
t
o
top of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
m
inor fi
x
to db_basic
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her
L
ee
upd
a
tes to refere
n
ce/s
q
l
g
raph
.
r
s
t docs
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
is
t
opher Lee
added SQL saving section to db tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
C
hr
i
stopher Lee
basic
database tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher L
e
e
added back __len__() t
o
SQ
L
T
a
bleB
a
se
.
H
ow in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
add
e
d s
e
ction
o
n PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristopher Lee
a
dded section on
p
lugging in yo
u
r own
s
eq
u
ence parser
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stophe
r
L
ee
moved old
m
aterial out
to
c
ompgenomic
s
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
istopher Lee
some minor
seque
n
ce tutori
a
l revisions
commit
|
commitdiff
|
tree
2009-09-02
Christophe
r
Lee
ad
d
ed tutorial se
c
t
i
o
n on acc
e
s
s
ing sequence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher Lee
split up bullet
p
oint
s
to integrate in
t
o the code example
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher
L
ee
revis
e
d
s
e
q
uen
c
e tut
o
rial i
n
tro (first part)
commit
|
commitdiff
|
tree
2009-09-02
C
hristopher
Lee
Merge com
m
it 'remotes/
c
tb/xmlrpc_tu
t
orial' i
n
t
o tu
t
o
ria
l
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
he
r
Le
e
Merge commit 'remotes/
c
tb/doc_a
l
ignment' into
t
utor
i
a
l
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
e
e
revised gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
added GFF3 e
x
am
p
le of
gene buil
d
in
g
commit
|
commitdiff
|
tree
2009-09-01
Chr
i
stophe
r
Lee
Merge c
o
mmit '
r
emotes/mkszub
a
/xmlrpc_
t
u
t
orial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
C
h
ri
s
topher
L
e
e
Merge
commit '
r
e
m
otes/ctb/doc_annotations' into tutorial
commit
|
commitdiff
|
tree
2009-09-01
Christophe
r
L
e
e
extracted material for
s
eparate datab
a
se
t
utoria
l
commit
|
commitdiff
|
tree
2009-08-29
Christopher Le
e
rem
o
ved unnecessary stat and shut
i
l import fr
o
m setu
p
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christopher Lee
fixed easy_install bug
by prote
c
t
ing co
o
rdinator
.
Resour
c
eFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chr
i
stopher
L
e
e
fixed blast_test: renamed test_seq_without_db() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
to
p
her
Lee
Merge commit 'remotes
/
ctb/minor_fixes'
into mi
n
or_fixes
commit
|
commitdiff
|
tree
2009-08-04
Christoph
e
r Lee
f
ix po
r
t passing
in t
e
s
tutil
.
TestXMLRPCServ
e
r
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
i
stopher
Lee
us
e
pair_identity_tup
l
e
(
) for blast_
t
est formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
top
h
er Lee
added B
l
astBa
s
e
.
tearDow
n
() to clos
e
s
e
q
dbs as they
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher L
e
e
Merge commit 'remotes/mkszuba
/
doc_
m
ake
'
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher Lee
M
e
r
g
e
com
m
i
t
're
m
otes/mkszuba/rpm'
commit
|
commitdiff
|
tree
2009-07-29
Christoph
e
r
L
ee
got rid
o
f Blast
M
appin
g
.
warn_abou
t
_s
e
lf_
m
atches
(
)
commit
|
commitdiff
|
tree
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