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generalized iter_keys(), added orderBy support
2009-09-09
Ch
r
istop
h
er Le
e
ge
n
eralize
d
iter_
k
eys(), a
d
ded o
r
d
e
r
By sup
p
ort
commit
|
commitdiff
|
tree
2009-09-08
Ch
r
i
sto
p
he
r
Lee
c
reated MySQLServerInfo class tha
t
uses SSCursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
add
e
d useStreaming opt
i
on
t
o mysql_
c
on
n
ect()
commit
|
commitdiff
|
tree
2009-09-08
Christo
p
h
e
r
L
ee
fixe
d
n
ew_cu
r
sor() to
p
ropag
a
te a
r
ra
y
siz
e
s
e
tting properly
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
added test fo
r
bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Lee
fix
e
d bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher
L
e
e
added t
e
st for GraphView keys / len
only reflectin
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
adde
d
inverse supp
o
rt fo
r
G
r
aphView
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
s
topher L
e
e
added
t
e
st for G
r
aphView invers
e
an
d
im
p
r
o
ved
M
ap
V
iew
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
make Grap
h
V
iew raise KeyError i
f
key has no rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
tophe
r
Lee
ad
d
ed t
e
st
s
for Ma
p
View
iterators and
len
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
avoid possible iter / ke
y
s infinite
l
oop
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Lee
added lots of
t
ests
for graphs with nodes inst
e
ad of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Lee
corrected the SQLGra
p
h iterator methods
and impro
v
ed
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
testutil needed new name
of
g
e
t
_name_cursor
(
)
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
made get_na
m
e_curs
o
r()
use DBServerInfo
commit
|
commitdiff
|
tree
2009-09-05
C
hristo
p
her
Lee
added iteratio
n
test
to graph_t
e
st
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
use new iter
_
keys() method
commit
|
commitdiff
|
tree
2009-09-05
C
h
r
istopher Lee
add
e
d better iter method
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
Merge commit 'rem
o
tes/ctb/xmlrpc_patches'
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
Merge commi
t
're
m
otes/mkszuba/fink'
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
o
pher Lee
r
e
m
ov
e
d
t
e
sts/oldtest
s
/
n
lmsa_dm2_megatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
ist
o
pher Lee
Merge com
m
it 'remotes/m
k
szuba/docfixe
s
'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
M
e
rge commit 'remotes
/
mkszuba/
c
leanup'
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
Merge
c
o
mmit 'r
e
motes/mkszuba/bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
correct
e
d ClassicUn
p
ickler referenc
e
to
point to c
l
assu
t
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
removed un
u
se
d
shelve
import
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
removed unused import item
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
sto
p
he
r
Lee
Mer
g
e branch 'tu
t
orial'
commit
|
commitdiff
|
tree
2009-09-04
C
h
rist
o
ph
e
r Lee
add
e
d argu
m
ent to make MapView inverse able to reconstitu
t
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
add
e
d test of le
n
() method for SQLTable
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
a
dded d
b
tutorial
(
mappi
n
g) back to guideli
s
t
table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er
Lee
m
a
pping tutorial just covers mappin
g
s,
s
o
r
emoved
r
efe
r
e
n
c
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istop
h
e
r L
e
e
ad
d
ed MapView inve
r
se ex
a
mple to
tutorial
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
added MapView docs
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
i
s
topher
Lee
added test fo
r
trapping non-invertible
MapV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
topher Lee
added test
for __inv
e
rt__ meth
o
d to
M
apV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Le
e
a
d
ded
_
_invert__
met
h
o
d
t
o MapView
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her
Lee
added material on SQL
M
apView
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
added sections
on
m
apping to
disk /
worldbas
e
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
changed title of xmlrpc tutoria
l
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
minor fixe
s
to gene tu
t
orial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
moved materia
l
out of
w
orldbase
.
rst
to
w
orld
b
ase2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
s
epa
r
ate tutorial
o
n
saving data to wor
l
d
b
a
s
e
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
isto
p
her Lee
m
oved schema m
a
terial to worldbase2
.
r
s
t tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
a
dde
d
worldba
s
e security
warni
n
g
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
h
er Lee
mor
e
r
evisi
o
ns abo
u
t do
w
nloa
d
ing tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
revisions to downlo
a
d=True secti
o
n
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er
L
ee
ad
d
e
d
dependency sec
t
i
on in worldbase
.
rst tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Christopher L
e
e
add
e
d worldbas
e
.
d
ir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
ad
d
ed intro secti
o
n t
o
worldbase
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
e
r
Lee
added Purpo
s
e
t
o alignment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher
L
ee
more little
c
h
anges to annotation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added Pur
p
ose and int
r
o t
o
annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
topher Lee
moved new ba
s
ic tutorials to
top o
f
guide
list
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristoph
e
r L
e
e
m
ino
r
fix to db_basic
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher L
e
e
updates to
r
efer
e
nce
/
sqlgraph
.
rst do
c
s
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
added
S
Q
L s
a
ving section t
o
db tuto
r
i
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
basic da
t
a
b
as
e
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
added b
a
ck
_
_
len__() to SQLTabl
e
Base
.
How in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Le
e
add
e
d
sec
t
ion on
P
refixUnio
n
Dict
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher
L
ee
added sectio
n
on plugging in
you
r
o
w
n sequence parser
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
e
e
m
o
ved old material out to co
m
pgenom
i
cs
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
some
m
i
n
o
r s
e
quence t
u
tori
a
l re
v
isions
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
added tuto
r
ia
l
section on ac
c
essi
n
g
sequence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
s
t
op
h
e
r Le
e
split
u
p bullet poi
n
ts
to int
e
grate into
the c
o
de example
commit
|
commitdiff
|
tree
2009-09-02
Christopher L
e
e
r
evi
s
ed sequence tutorial intro (first part)
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
ph
e
r Le
e
M
erge
commi
t
'remotes/ctb/xm
l
rpc_tutorial' into
tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
M
e
rge commit 'remotes/
c
tb/
d
oc_alignm
e
n
t' into tut
o
r
i
a
l
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
r
e
vi
s
e
d
gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
her Lee
a
d
ded GFF3 example
o
f gen
e
building
commit
|
commitdiff
|
tree
2009-09-01
Christop
h
er Lee
Merge commit 'remotes/mkszu
b
a/xmlrpc_
t
utor
i
al' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christ
o
pher Le
e
Merg
e
commit 'remotes/
c
t
b
/
d
oc_annotations' int
o
tut
o
ri
a
l
commit
|
commitdiff
|
tree
2009-09-01
C
h
ri
s
tophe
r
Lee
extrac
t
e
d
material f
o
r sep
a
rate
database tutorial
commit
|
commitdiff
|
tree
2009-08-29
Christopher Lee
r
emoved
u
nnecessary
stat
a
nd shu
t
il
i
mport from setup
.
p
y
commit
|
commitdiff
|
tree
2009-08-14
C
hr
i
stopher Lee
fixed easy_inst
a
ll bug by
pr
o
tecting
coordinat
o
r
.
Resou
r
ceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
C
h
ristop
h
er Lee
f
i
xed blast_test:
r
enamed te
s
t_seq
_
w
ithout_d
b
() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chr
i
stop
h
e
r Lee
M
e
r
ge commit 'remo
t
es
/
ctb
/
minor_fixes' into mino
r
_fixes
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher Le
e
fix port passing
in testutil
.
TestXMLRPCServ
e
r
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
us
e
p
air_ident
i
ty_tuple() for blast_t
e
st
f
ormatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
add
e
d BlastBase
.
t
e
a
rD
o
wn() to cl
o
se seqdbs as they
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merge commit 'remotes/mkszu
b
a/doc_make'
commit
|
commitdiff
|
tree
2009-08-04
Christo
p
her Lee
Merge co
m
mit
'
remotes/mkszu
b
a/rpm'
commit
|
commitdiff
|
tree
2009-07-29
Christopher Le
e
got r
i
d of Bl
a
stMa
p
p
i
ng
.
wa
r
n_a
b
out_self_matches()
commit
|
commitdiff
|
tree
2009-07-29
Christo
p
her Lee
ch
a
nged NLMS
A
pai
r
wiseMode to allow reporting of self
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Christopher
L
e
e
Me
r
g
e
com
m
it 'remotes/mkszuba/
d
ebian'
commit
|
commitdiff
|
tree
2009-07-29
C
h
ri
s
topher Lee
r
etry rea
d
ing port_
f
ile in Te
s
tXMLRPCServer
s
everal
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Chri
s
to
p
h
er Lee
added comments to p
r
ocess_blast()
commit
|
commitdiff
|
tree
2009-07-29
Christopher Le
e
fix prob
l
em
introduced in proc
e
ss
_
blast() by co
m
mit
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
C
h
r
i
stopher L
e
e
hand
l
e miss
i
ng WINDIR case o
n
Windo
w
s
commit
|
commitdiff
|
tree
2009-07-28
Christopher Lee
added SeqTranslator
.
__
r
epr__()
commit
|
commitdiff
|
tree
2009-07-28
Chris
t
o
p
her Lee
Merge commit
'
r
e
mot
e
s
/
c
t
b/simpleframe_fo
r
matdb_clean
u
p
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Ch
r
istopher L
e
e
Merge bran
c
h
'
master
'
into sim
p
l
e
frame
commit
|
commitdiff
|
tree
2009-07-28
Christoph
e
r L
e
e
a
d
ded SeqTranslato
r
.
iter_frames() method,
u
sed
i
n
BlastxMapp
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christopher
L
ee
Merge c
o
mmi
t
're
m
otes
/
ctb/simpleframe_doc_align' i
n
t
o
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Chris
t
opher Lee
pro
t
ect 2 more tests usi
n
g
b
l
a
st_ena
b
l
e
d()
c
hec
k
commit
|
commitdiff
|
tree
2009-07-27
Chri
s
topher L
e
e
f
i
xed synt
a
x
error
commit
|
commitdiff
|
tree
2009-07-27
C
h
ristopher Lee
added python 2
.
3 code for F
i
lePopen t
o
detect bad exit
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christopher Lee
Merge b
r
anch
'
no_e
d
ge_db
'
commit
|
commitdiff
|
tree
2009-07-27
Christopher Lee
M
erge
branch 'sil
e
ncio'
commit
|
commitdiff
|
tree
next