repo.or.cz
/
pygr.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
added test for GraphView inverse and improved MapView inverse test
2009-09-05
Christophe
r
L
e
e
added test
f
or GraphView inv
e
rse and improved MapView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
op
h
er Lee
make GraphView r
a
ise KeyErr
o
r if key has no rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristop
h
er Lee
added tests for Ma
p
View iterators and
l
e
n
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher Lee
avoid possible iter / keys infinite lo
o
p
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Lee
added lo
t
s of te
s
ts for graphs with nodes inst
e
ad
o
f
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher
L
ee
corrected
t
he SQLGr
a
ph iterato
r
methods an
d
imp
r
o
v
ed
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
h
ris
t
opher Lee
t
e
s
tutil needed new name of get
_
name_cur
s
o
r
()
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Lee
made ge
t
_name_cursor
(
) use
D
B
S
erverIn
f
o
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
added
iteratio
n
t
e
s
t to gra
p
h_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Lee
use new iter_keys() meth
o
d
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
phe
r
Lee
added better ite
r
method
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
M
e
r
g
e
co
m
m
it 're
m
otes/c
t
b/
x
ml
r
p
c_patc
h
es'
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Le
e
M
er
g
e
c
o
m
m
it 'remotes/mksz
u
ba/
f
ink'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
r
e
m
o
ved test
s
/oldte
s
ts/nlm
s
a_
d
m2
_
megate
s
t
.
py
commit
|
commitdiff
|
tree
2009-09-04
C
h
risto
p
h
e
r Lee
M
erge commit 'remotes/mkszuba/docfix
e
s'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her
Lee
Merge comm
i
t 'remotes/mkszuba/cleanup'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stophe
r
Lee
Merge commit 're
m
otes/mks
z
u
b
a/bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
c
orrected ClassicUnpickler
re
f
ere
n
ce to
p
oint t
o
classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
re
m
oved unuse
d
shelve
import
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
re
m
oved unused import
i
t
em
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stoph
e
r Lee
Merge branch 't
u
torial'
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
added argument to
m
ake MapView inverse ab
l
e to reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristop
h
er
Lee
added
t
est of len(
)
m
eth
o
d for SQLT
a
ble
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
ed db tutor
i
al (ma
p
pi
n
g) back t
o
g
uidelist table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
i
s
topher Lee
ma
p
p
in
g
tu
t
orial just
c
overs mappings, so remove
d
referenc
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
top
h
er L
e
e
added MapView inv
e
rse exam
p
le to
tutori
a
l
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
Lee
added MapView doc
s
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
a
d
ded tes
t
for tra
p
ping
n
on
-
inv
e
rtible MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
dded test f
o
r __invert__ method t
o
M
a
p
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
added
_
_invert
_
_
me
t
h
od to Ma
p
Vi
e
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
added material on SQL MapVi
e
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
d
d
e
d
sections
o
n mapping to disk / worldb
a
s
e
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
changed title of
xm
l
rpc
tuto
r
ia
l
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Le
e
m
i
n
or fixes to gene tutorial
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
mo
v
ed
m
aterial out of worl
d
base
.
rst t
o
worldb
a
s
e2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
opher Lee
se
p
arate t
u
torial on saving data to worldbase
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her
Lee
mo
v
ed schema m
a
terial t
o
worldbase2
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
added worldba
s
e
sec
u
ri
t
y
warning
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
L
e
e
more
r
evisions about down
l
oading tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
re
v
isions to download=True section
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
added
d
ependency
s
ecti
o
n in world
b
ase
.
rst tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ri
s
t
op
h
er L
e
e
added
wor
l
dba
s
e
.
dir() tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stop
h
er Lee
a
d
d
e
d intro sectio
n
to worldbase
.
r
st tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
ad
d
ed Purpose to alig
n
ment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
more little changes to
annota
t
ion2
.
rs
t
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Lee
a
dded
P
urp
o
se and intro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher Lee
mo
v
ed new basic tutorials to top of
guide l
i
st
commit
|
commitdiff
|
tree
2009-09-03
C
h
ris
t
o
ph
e
r Lee
minor fix to d
b
_basic
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
updates to refere
n
ce/sqlgraph
.
rst docs
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
e
r
Lee
a
d
ded
S
Q
L saving section to db tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
phe
r
Le
e
basic database tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added b
a
ck
_
_
l
e
n__() to S
Q
LTableBase
.
How
i
n
h
e
ck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
st
o
pher
L
ee
added s
e
ction on PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stoph
e
r
Lee
added s
e
ction on plugging
i
n
your own sequence parser
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
isto
p
her
Lee
moved old materia
l
out to com
p
g
e
nomics
.
r
st
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
some minor sequence tutorial revisions
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
h
er Lee
added tutor
i
al secti
o
n on accessing
seq
u
ence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
o
pher
L
ee
spl
i
t up
bu
l
l
e
t poin
t
s
to integrate
into the
c
ode
ex
a
mple
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
revi
s
ed sequ
e
nce tut
o
rial intro (first
p
art)
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristopher
Lee
Merge commit
'remotes/ctb/xmlrpc_tut
o
rial' in
t
o tutorial
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
is
t
opher Lee
Merge commit
'remotes/ctb/doc_align
m
ent' into tu
t
oria
l
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher
L
ee
revis
e
d gf
f
3 code
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r
Lee
a
dd
e
d GFF3 exa
m
ple of gene building
commit
|
commitdiff
|
tree
2009-09-01
Christopher Le
e
Merge
c
omm
i
t 'remot
e
s/m
k
s
z
uba/xmlrpc_tuto
r
ial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
M
er
g
e commit 'remote
s
/ctb/doc_annotati
o
ns
'
i
n
t
o
t
u
t
orial
commit
|
commitdiff
|
tree
2009-09-01
Christoph
e
r Lee
ext
r
acted material for separate dat
a
b
a
se tutorial
commit
|
commitdiff
|
tree
2009-08-29
Christopher Lee
removed unnec
e
ssary stat and sh
u
til
i
mport from se
t
up
.
py
commit
|
commitdiff
|
tree
2009-08-14
C
h
ristopher
Lee
fixed easy_in
s
tal
l
bu
g
by protecting coordina
t
or
.
Resou
r
ceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christophe
r
Le
e
fixed blast_test: renamed test_seq_witho
u
t_db() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher L
e
e
Me
r
ge commit
'
remotes/ctb/minor_f
i
xes'
i
nt
o
minor_fix
e
s
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
topher
Le
e
fix port
pa
s
si
n
g in testutil
.
TestXMLRP
C
S
e
r
ver
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
istop
h
er L
e
e
use pair_identity
_
tuple(
)
for blast_test formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
toph
e
r Lee
added BlastBase
.
tearDown() to close seqdbs as
t
hey
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christop
h
e
r Lee
Merge co
m
m
it
'
r
e
motes/mkszuba
/
do
c
_make'
commit
|
commitdiff
|
tree
2009-08-04
Christo
p
her Lee
M
e
rge commi
t
'remotes/mkszuba
/
rpm'
commit
|
commitdiff
|
tree
2009-07-29
Chr
i
s
topher Le
e
got ri
d
of
B
lastM
a
pping
.
w
a
rn
_
abo
u
t_self_matches
(
)
commit
|
commitdiff
|
tree
2009-07-29
Christ
o
pher L
e
e
changed NLMSA pairwiseMode to allow repor
t
ing of
self
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Chri
s
topher Lee
Merge co
m
mit 'r
e
motes/mksz
u
b
a
/debian'
commit
|
commitdiff
|
tree
2009-07-29
C
hristopher
L
ee
retry read
i
n
g port_file
in Te
s
t
XMLRPCServer several
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Chri
s
t
opher Lee
added comments
t
o process_
b
last()
commit
|
commitdiff
|
tree
2009-07-29
C
h
ristopher Lee
f
i
x problem
introduced in
pr
o
cess_blast() by com
m
i
t
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
C
h
ris
t
oph
e
r
L
ee
handle
mis
s
ing WIN
D
IR case on Windo
w
s
commit
|
commitdiff
|
tree
2009-07-28
Christopher Lee
add
e
d
S
eqTr
a
n
slator
.
__repr_
_
()
commit
|
commitdiff
|
tree
2009-07-28
Christo
p
her Lee
Merge commit
'remot
e
s/ctb/simplefram
e
_formatdb_cleanup
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christo
p
he
r
Lee
Merge branch 'master' into simpl
e
fr
a
me
commit
|
commitdiff
|
tree
2009-07-28
Christ
o
p
h
er Lee
a
dded SeqTranslator
.
iter_frames() method, used in Blast
x
M
a
pp
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Ch
r
i
st
o
pher
L
ee
Merge commit 'remote
s
/ctb/simplefram
e
_
doc
_
align'
into
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christopher Lee
p
rotect 2 more test
s
usi
n
g bla
s
t_enabled() check
commit
|
commitdiff
|
tree
2009-07-27
C
hrist
o
pher Lee
fixe
d
s
y
ntax error
commit
|
commitdiff
|
tree
2009-07-27
Christ
o
pher Lee
adde
d
python 2
.
3 code for
F
i
l
ePopen to detec
t
bad
exit
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christop
h
er Lee
Merge branc
h
'no_edge_db'
commit
|
commitdiff
|
tree
2009-07-27
C
hristopher Lee
M
erge branch 'silen
c
io'
commit
|
commitdiff
|
tree
2009-07-27
C
h
rist
o
pher Lee
added sh
o
wFormatdbMessages op
t
ion to Blast
M
apping
commit
|
commitdiff
|
tree
2009-07-25
Christopher Lee
a
d
ded sup
p
ort for n
o
-edgeD
B
case in
m
apping
.
Graph
:
.
.
.
commit
|
commitdiff
|
tree
2009-07-23
Christ
o
pher Lee
add
e
d
o
ption fo
r
la
t
ex
output o
f
the reference
m
anua
l
commit
|
commitdiff
|
tree
2009-07-16
Christop
h
er Lee
M
erge co
m
mit 'remotes/ct
b
/blast_t
e
s
t
_
r
c' into simple
f
rame
commit
|
commitdiff
|
tree
2009-07-16
Ch
r
istopher Lee
a
dde
d
more docstrings for
bla
s
t
.
py
commit
|
commitdiff
|
tree
2009-07-16
Christopher Lee
removed old B
l
a
s
txMappin
g
code
commit
|
commitdiff
|
tree
2009-07-16
Christopher Lee
n
e
w
,
greatly s
i
m
plifi
e
d
Blas
t
xMa
p
p
in
g
commit
|
commitdiff
|
tree
2009-07-16
Christoph
e
r Lee
switched t
e
s
t_blas
t
x_server to use ne
w
Translat
i
o
n
DB
.
.
.
commit
|
commitdiff
|
tree
next