repo.or.cz
/
pygr.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
added tests for MapView iterators and len
2009-09-05
Chri
s
tophe
r
Lee
adde
d
t
e
sts
f
or MapVi
e
w iterators and len
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
o
p
h
er Lee
avo
i
d possible i
t
e
r
/ keys in
f
inite loop
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
s
topher Lee
add
e
d lots of te
s
ts f
o
r grap
h
s with
n
odes in
s
tea
d
of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Lee
c
orrected the SQLGraph it
e
rator meth
o
d
s
and improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
t
e
stutil need
e
d new name of get
_
name_cursor()
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher Lee
made
g
et_name_cursor() us
e
DBSe
r
verInfo
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
add
e
d
iter
a
t
i
on test
t
o
graph_
t
est
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er Lee
use new iter
_
ke
y
s
(
) metho
d
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
tophe
r
Le
e
adde
d
b
ette
r
iter method
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
M
e
rge commit 'remotes
/
c
t
b
/
xmlrpc_patches
'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge commit 'rem
o
tes/mks
z
uba/fink'
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Lee
r
e
moved tests/oldtests/nlmsa_d
m
2_
m
egate
s
t
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
L
ee
Merge commit
're
m
o
tes/mkszuba/docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her
Lee
M
e
r
g
e commi
t
'r
e
motes/mk
s
zuba
/
cleanup'
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
stopher Lee
Merge comm
i
t 'rem
o
t
e
s/mkszuba/bsddb_bsd
d
b3'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ris
t
op
h
er
L
e
e
correc
t
ed
ClassicU
n
pic
k
ler reference to point to classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristo
p
her Lee
r
emoved unused s
h
elve imp
o
rt
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
remov
e
d unused import item
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istoph
e
r
L
ee
Me
r
ge br
a
nch 'tutori
a
l'
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
L
e
e
added argumen
t
to ma
k
e Ma
p
View inve
r
se abl
e
to reco
n
stitut
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added t
e
st of len() method for S
Q
LTa
b
le
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
a
dded
d
b tutor
i
a
l
(
m
appin
g
) back to guidelist table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
istopher L
e
e
mapping tutorial ju
s
t covers
mappings,
so
remov
e
d refere
n
ce
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
added MapView inverse example t
o
tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
L
ee
added
M
a
pView docs
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er
Lee
added test for trapping non-inv
e
rtibl
e
MapView
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er
Lee
added test for __invert_
_
me
t
hod
t
o
MapView
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristoph
e
r Le
e
a
dded __invert_
_
me
t
hod
to Map
V
ie
w
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
s
topher Lee
ad
d
ed
material on
S
QL M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
add
e
d sections on
mapping to d
i
s
k
/
world
b
ase
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
e
e
changed title of xml
r
pc tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
sto
p
h
er Lee
mino
r
fixes to gen
e
tutoria
l
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
m
oved ma
t
e
ri
a
l ou
t
of worl
d
base
.
rst to wo
r
ldbase2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
separate tutorial on s
a
ving da
t
a to
worldbas
e
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
top
h
er Lee
m
oved sc
h
e
ma materia
l
to world
b
ase2
.
rst tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Le
e
add
e
d worldbase
security warning
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
more
r
evisions about downl
o
ading
t
utorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
isto
p
he
r
L
ee
revision
s
to download=True
s
ection
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
added depe
n
dency s
e
ctio
n
i
n wo
r
ldbase
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worldbase
.
dir()
tutori
a
l
commit
|
commitdiff
|
tree
2009-09-03
C
hris
t
o
p
h
e
r Lee
added intro
section to
wor
l
dbase
.
r
s
t
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
added Purpose to a
l
ignment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher L
e
e
mo
r
e
litt
l
e changes to annotation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
added Purpose and intro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
opher Le
e
m
ove
d
new basic tu
t
orials
t
o top of g
u
ide
li
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Le
e
minor fix to db
_
basic
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
u
p
dates to reference/
s
qlgr
a
ph
.
rst d
o
c
s
commit
|
commitdiff
|
tree
2009-09-03
C
h
ris
t
ophe
r
L
ee
added SQL sa
v
ing sec
t
i
on to
d
b tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher Lee
basic database tu
t
ori
a
l
commit
|
commitdiff
|
tree
2009-09-03
C
hris
t
opher
Lee
add
e
d back
__le
n
__() to SQLTableBase
.
How
in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added section o
n
Pr
e
fi
x
Uni
o
nDict
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher Lee
add
e
d sect
i
on on pluggin
g
in your own s
e
que
n
c
e
parser
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stop
h
e
r Lee
moved old mate
r
ial out to compgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
C
h
rist
o
pher
L
ee
so
m
e minor sequence tutorial revi
s
ions
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
added tutorial
s
ection on accessing sequen
c
e dat
a
base
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
s
p
lit up bu
l
let points to i
n
tegrate
into th
e
code example
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
re
v
i
s
ed
s
equence
t
ut
o
rial intro (
f
irs
t
part)
commit
|
commitdiff
|
tree
2009-09-02
C
h
rist
o
pher Lee
Merg
e
commit 'remotes/ctb
/
xm
l
rpc_tutorial' in
t
o tut
o
rial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
Merge
c
ommit 'remotes/c
t
b/d
o
c_alignment' into tutor
i
al
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
her Lee
r
evise
d
gff3 c
o
de
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
istopher Lee
added G
F
F3 exam
p
le of gene bu
i
lding
commit
|
commitdiff
|
tree
2009-09-01
Christ
o
pher Le
e
Me
r
ge
commit
'remo
t
es/mkszuba/xm
l
rpc_tutorial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Chris
t
opher Lee
Merge
c
ommit 'remotes/ctb/do
c
_annotations' into tutorial
commit
|
commitdiff
|
tree
2009-09-01
Chr
i
stopher Lee
extracted material for separate
d
a
t
abase
tut
o
r
ial
commit
|
commitdiff
|
tree
2009-08-29
Chri
s
topher Lee
removed unnecessary sta
t
an
d
s
hutil import
from setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
C
hristopher Lee
f
i
xed easy
_
in
s
t
a
l
l
bug by protecting
c
o
or
d
inator
.
R
e
sourceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
fixed blast
_
test
:
renamed test_se
q
_
without_db(
)
to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
toph
e
r Lee
Merge commit
'
r
e
motes/ctb/mi
n
or_fi
x
es' into minor_fi
x
es
commit
|
commitdiff
|
tree
2009-08-04
Christo
p
h
er L
e
e
fix port passing in testuti
l
.
TestX
M
L
RPCSe
r
ver
commit
|
commitdiff
|
tree
2009-08-04
Christop
h
er Le
e
use pair_identity
_
tuple
(
) for bla
s
t_test form
a
tting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher
Lee
added
B
lastBas
e
.
tearDown() to
close seq
d
b
s
as
t
hey
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merg
e
c
ommit 'remot
e
s/mk
s
z
uba/doc
_
ma
k
e'
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merge c
o
m
m
it 'rem
o
tes/mkszuba/rpm'
commit
|
commitdiff
|
tree
2009-07-29
Christophe
r
Lee
got
r
i
d
o
f
B
las
t
Ma
p
ping
.
warn_abo
u
t_sel
f
_matc
h
e
s
()
commit
|
commitdiff
|
tree
2009-07-29
Chr
i
s
t
opher L
e
e
cha
n
g
e
d
N
L
MSA
p
a
irwiseMode to a
l
low reporting of self
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Christopher Lee
Mer
g
e
commi
t
'
r
e
motes/mkszuba/
d
ebian'
commit
|
commitdiff
|
tree
2009-07-29
Christopher Lee
r
etry
r
eadin
g
por
t
_file in Test
X
ML
R
P
C
Server
s
ev
e
ral
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Chr
i
stopher Le
e
added commen
t
s to pr
o
cess_bl
a
st()
commit
|
commitdiff
|
tree
2009-07-29
Christop
h
er Lee
f
i
x prob
l
e
m introduced
in pro
c
ess_blast() by
c
om
m
it
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christop
h
e
r
L
e
e
handle
missing WI
N
DIR ca
s
e on Win
d
ows
commit
|
commitdiff
|
tree
2009-07-28
Ch
r
istop
h
er
L
e
e
added Se
q
Translator
.
__
r
epr_
_
()
commit
|
commitdiff
|
tree
2009-07-28
Chri
s
tophe
r
Lee
Merge comm
i
t 'remotes/ctb
/
s
impleframe
_
formatdb_cleanup
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christoph
e
r Lee
Merge
b
ranch 'master
'
int
o
simpleframe
commit
|
commitdiff
|
tree
2009-07-28
Christopher Lee
added SeqTranslator
.
i
t
er_frames() method, used
i
n
BlastxMapp
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Chr
i
s
top
h
er
L
ee
M
erge commit 'remotes/ctb/simpleframe_do
c
_al
i
gn
'
into
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Ch
r
istopher Lee
protect 2 more t
e
sts
us
i
ng blast_ena
b
l
ed()
c
heck
commit
|
commitdiff
|
tree
2009-07-27
Christ
o
pher Lee
fixed sy
n
t
a
x error
commit
|
commitdiff
|
tree
2009-07-27
Ch
r
istopher Lee
added pyt
h
on 2
.
3
c
ode for Fi
l
ePopen to detect bad
e
xit
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christopher L
e
e
Merge branch 'no_edge_db'
commit
|
commitdiff
|
tree
2009-07-27
Christopher
L
ee
Merge branch 'silencio'
commit
|
commitdiff
|
tree
2009-07-27
Christopher Lee
added
sh
o
wFormatdbM
e
ssages option to BlastM
a
ppin
g
commit
|
commitdiff
|
tree
2009-07-25
Christop
h
er Le
e
a
d
d
ed support for no-edgeDB case
i
n m
a
pping
.
Gr
a
ph:
.
.
.
commit
|
commitdiff
|
tree
2009-07-23
Christopher Le
e
a
d
d
e
d op
t
ion for
latex
output of the reference man
u
al
commit
|
commitdiff
|
tree
2009-07-16
Chris
t
opher Lee
Merge
c
o
mmit 'remotes/ctb/b
l
a
s
t_test_rc' into sim
p
leframe
commit
|
commitdiff
|
tree
2009-07-16
Christ
o
pher Lee
a
dde
d
more do
c
st
r
ings f
o
r blast
.
py
commit
|
commitdiff
|
tree
2009-07-16
C
hristopher Lee
re
m
oved old
BlastxMapp
i
ng
c
od
e
commit
|
commitdiff
|
tree
2009-07-16
Christopher Lee
n
ew, greatly
s
implified
B
lastxM
a
pping
commit
|
commitdiff
|
tree
2009-07-16
Christopher L
e
e
s
w
itch
e
d
test
_
blast
x
_
server to
u
se n
e
w TranslationDB
.
.
.
commit
|
commitdiff
|
tree
2009-07-16
Christoph
e
r Lee
added
r
e
a
d_b
l
ast_al
i
g
n
me
n
t() tra
n
sla
t
eD
e
st opti
o
n
commit
|
commitdiff
|
tree
2009-07-16
C
hristopher Lee
added NLMSA
.
edges() method
commit
|
commitdiff
|
tree
next