repo.or.cz
/
pygr.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
make itervalues / iteritems use same orderBy rules
2009-09-09
Christopher
L
ee
make iterv
a
l
u
es / iteritems use same orderBy r
u
les
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
er Lee
generalized iter_key
s
(),
a
dd
e
d orde
r
By support
commit
|
commitdiff
|
tree
2009-09-08
Chr
i
s
topher Lee
c
re
a
ted MySQLServe
r
Info class tha
t
uses SS
C
ur
s
or f
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
C
h
ristopher L
e
e
a
d
ded useStre
a
ming option to mysql_connect()
commit
|
commitdiff
|
tree
2009-09-08
C
h
r
istopher Lee
f
ixed new_cursor() t
o
propagate ar
r
aysize setting properly
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher
L
ee
adde
d
t
e
st for
bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher
L
ee
f
ixed bug
84
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Le
e
a
dded test for GraphView keys /
l
en
only reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added in
v
e
r
se
s
upport
for G
r
aphView
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
o
phe
r
Lee
added t
e
st for GraphView
inverse
a
nd
i
mpr
o
ved MapView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
ist
o
pher Lee
ma
k
e GraphView ra
i
se KeyErr
o
r if key h
a
s
no rows i
n
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher
Lee
added tests fo
r
MapView it
e
rator
s
a
n
d len
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
a
v
o
id po
s
sible iter / keys infini
t
e loop
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added lots
of t
e
sts f
o
r graphs
w
i
t
h
n
odes
instead of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
correc
t
ed the SQLGraph i
t
erator method
s
and impr
o
ved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
to
p
her Lee
testut
i
l
needed new name of get_
n
ame_cursor()
commit
|
commitdiff
|
tree
2009-09-05
C
h
rist
o
pher Lee
mad
e
get_
n
ame_cursor() use DBServerInfo
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added
iteratio
n
test to graph_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
use
n
ew it
e
r_keys() method
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
adde
d
better iter met
h
o
d
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Me
r
ge commit
'
r
emotes/ctb/xmlrpc_patches'
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher L
e
e
M
e
rge commit 'remotes/m
k
szuba/fi
n
k'
commit
|
commitdiff
|
tree
2009-09-04
C
hri
s
to
p
her
L
ee
re
m
o
v
e
d tes
t
s/oldtests/nl
m
sa_dm2
_
mega
t
est
.
py
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
Merge com
m
i
t 'remotes/m
k
s
z
uba
/
docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
Merge commi
t
'
rem
o
t
e
s/mkszuba/cl
e
anup'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
Merge commi
t
'remotes/mk
s
z
u
b
a/bs
d
db_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
cor
r
ect
e
d ClassicUnpic
k
ler reference to
p
oint to class
u
til
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stoph
e
r Lee
removed un
u
sed shel
v
e import
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristophe
r
Lee
r
e
moved unus
e
d impor
t
item
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge
b
r
anch 'tut
o
rial
'
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
ist
o
pher Lee
added a
r
gument to make MapView in
v
ers
e
a
b
l
e t
o
reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stoph
e
r Lee
added test o
f
len() met
h
od for
SQLTable
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
ist
o
pher Lee
added db tutorial (mapping)
bac
k
to guideli
s
t tabl
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
mappin
g
tutori
a
l just covers mappings, s
o
removed reference
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
dded Ma
p
Vi
e
w inverse exa
m
ple to tuto
r
i
a
l
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
st
o
phe
r
Lee
added MapV
i
ew docs
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
p
he
r
Lee
added tes
t
f
o
r trapping non-invertible MapVie
w
commit
|
commitdiff
|
tree
2009-09-04
C
hristo
p
her L
e
e
added test for __inver
t
_
_
method
t
o
MapV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
ed __inv
e
rt__ method to Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added material on SQL
M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristoph
e
r Lee
added secti
o
n
s
on
m
appin
g
to disk
/ wo
r
ldb
a
se
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
stopher Le
e
chang
e
d
title
o
f xmlr
p
c tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
m
i
nor fixes
to
gene tutori
a
l
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
e
r
Lee
mov
e
d ma
t
erial ou
t
o
f
wor
l
dba
s
e
.
rst to worldba
s
e2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
s
topher Lee
separa
t
e tu
t
orial
o
n sa
v
ing
d
ata to wor
l
dbase
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
moved
sc
h
ema mater
i
al to worldba
s
e2
.
r
s
t tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
adde
d
worldbase security war
n
ing
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
is
t
opher Lee
more revisions
a
b
out downloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
to
p
her Lee
r
e
visions
t
o download=True sectio
n
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
ad
d
ed dependency sec
t
i
on in w
o
rl
d
base
.
rs
t
tut
o
r
ia
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worldb
a
s
e
.
dir() tu
t
orial
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Lee
added i
n
t
r
o sec
t
ion to world
b
a
se
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
added
P
urpose to alignment
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
more
l
ittle changes to
anno
t
ation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher
L
e
e
added
P
ur
p
ose an
d
intro to
a
nnotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
move
d
new
b
asic tutorials
to t
o
p of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
he
r
Lee
min
o
r fix t
o
db_basic
.
rs
t
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
updat
e
s to
ref
e
rence/sqlgraph
.
rs
t
docs
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added SQL savi
n
g sec
t
io
n
to db tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher Le
e
basic databa
s
e tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
add
e
d back __len
_
_() to S
Q
LTableB
a
se
.
How i
n
heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
op
h
e
r Lee
added
sectio
n
on PrefixUnio
n
D
i
c
t
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
her Lee
added se
c
tion
on plugg
i
ng in your own s
e
quen
c
e parser
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
h
e
r L
e
e
moved old mat
e
ri
a
l out to c
o
mpgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
phe
r
Lee
s
ome minor s
e
quence tutoria
l
revisions
commit
|
commitdiff
|
tree
2009-09-02
Christop
h
er Lee
added t
u
torial section on accessing
sequence databa
s
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
split up bull
e
t
p
o
i
nts to integrate into the
c
ode example
commit
|
commitdiff
|
tree
2009-09-02
Christophe
r
Lee
revised sequence tutorial in
t
ro (first part
)
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
Merge comm
i
t 'r
e
mote
s
/ctb
/
xmlrpc
_
t
uto
r
ial' in
t
o tutorial
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher Lee
Merge comm
i
t 're
m
otes
/
ctb/doc_alignm
e
nt' into
t
u
t
o
rial
commit
|
commitdiff
|
tree
2009-09-02
Christopher
Lee
r
e
v
ised gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
a
dded GFF3 examp
l
e of gene buildi
n
g
commit
|
commitdiff
|
tree
2009-09-01
Christopher
L
ee
Merge commit 'r
e
mo
t
e
s
/mkszuba/x
m
lrpc_tutor
i
al'
in
t
o
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
C
h
r
i
stopher Lee
Merge commit 're
m
otes/c
t
b/
d
oc_a
n
no
t
ations' into tutorial
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
ex
t
racted
m
a
t
e
r
ial for
s
e
par
a
te datab
a
s
e tutorial
commit
|
commitdiff
|
tree
2009-08-29
Christop
h
e
r
L
e
e
rem
o
ved unnecessary sta
t
and
shutil
import from setu
p
.
p
y
commit
|
commitdiff
|
tree
2009-08-14
C
h
ri
s
topher Lee
f
ixed easy_in
s
tall bug by protecting coordinator
.
ResourceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
toph
e
r
L
ee
fixe
d
blast_test: re
n
amed test_se
q
_with
o
ut_db
(
)
to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher Le
e
Merge commit 'remo
t
es/c
t
b/minor_fixes' into minor_fixes
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
fi
x
por
t
pas
s
in
g
in testutil
.
TestX
M
LRPCServer
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
use pair_identity_tuple() for blast_test formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
o
p
h
er Le
e
added Blas
t
Base
.
tearDo
w
n() to clos
e
seqdbs as the
y
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
oph
e
r
Lee
Merge
c
ommit 'r
e
motes/mksz
u
ba/do
c
_make
'
commit
|
commitdiff
|
tree
2009-08-04
C
h
ri
s
topher Lee
Merge commit 'r
e
mote
s
/mkszuba/rpm'
commit
|
commitdiff
|
tree
2009-07-29
Christop
h
er Lee
got rid of
BlastMapping
.
wa
r
n_about_self_ma
t
ches()
commit
|
commitdiff
|
tree
2009-07-29
Chri
s
t
o
pher Lee
changed NLMSA pairwiseMode to al
l
o
w
repo
r
ting of se
l
f
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Christopher
Lee
Merge
commit 'remotes/mkszuba
/
debian'
commit
|
commitdiff
|
tree
2009-07-29
C
hri
s
t
o
p
her Lee
retry read
i
ng port_file
i
n
TestXMLRPCServer se
v
eral
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Ch
r
istopher
L
ee
ad
d
ed
c
o
m
ments to
process_
b
last()
commit
|
commitdiff
|
tree
2009-07-29
Christo
p
he
r
Lee
fix pro
b
lem introduced in
p
rocess
_
blast() by commit
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christopher Lee
handle missin
g
WINDIR
case
on Windows
commit
|
commitdiff
|
tree
2009-07-28
C
h
ristopher
Lee
added Se
q
Translator
.
_
_
r
epr__()
commit
|
commitdiff
|
tree
2009-07-28
Christ
o
ph
e
r Lee
Merge com
m
i
t 'remote
s
/
ctb/simp
l
eframe_
f
o
r
matdb_cleanu
p
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
C
h
ristopher Lee
Merge branch 'maste
r
'
in
t
o simpleframe
commit
|
commitdiff
|
tree
2009-07-28
Christop
h
er
L
e
e
adde
d
SeqTran
s
lator
.
ite
r
_
frames(
)
method, used in BlastxMap
p
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
C
hristopher L
e
e
Merge commit
're
m
otes/ctb/simplefra
m
e_doc_align
'
into
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christopher L
e
e
protect 2 more tests using
b
last_enabled() chec
k
commit
|
commitdiff
|
tree
2009-07-27
Christop
h
e
r L
e
e
fixed syntax error
commit
|
commitdiff
|
tree
2009-07-27
C
hristopher Lee
a
dded python 2
.
3 code for FilePo
p
e
n to det
e
ct
b
a
d
e
x
it
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
Christop
h
er Lee
M
erge branch
'
no_ed
g
e_db'
commit
|
commitdiff
|
tree
next