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make itervalues / iteritems use same orderBy rules
2009-09-09
Christo
p
her Lee
m
a
ke itervalues
/ iteritems use same
orderBy ru
l
e
s
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher
L
e
e
ge
n
era
l
iz
e
d
i
ter_
k
eys(), added
o
rderBy support
commit
|
commitdiff
|
tree
2009-09-08
C
h
r
istopher Lee
created MySQLServerInfo class that uses SSCursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Chri
s
t
opher L
e
e
a
dd
e
d us
e
Streaming opti
o
n to mysql_connec
t
()
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
fixed new_cur
s
or
(
)
to prop
a
gate
arra
y
size setting
p
ro
p
e
r
ly
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
a
dde
d
test for bu
g
84
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher L
e
e
fi
x
ed bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Lee
added tes
t
for G
r
a
p
hView keys / len only reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
adde
d
inverse suppor
t
f
or GraphView
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added
t
est
f
or Graph
V
iew
in
v
erse an
d
i
mproved MapV
i
ew
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christophe
r
Lee
make Gra
p
hView rais
e
KeyEr
r
or
i
f ke
y
has n
o
ro
w
s in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher
Lee
added t
e
sts for M
a
pView
i
terators
and
len
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristopher Lee
avoi
d
p
ossible
ite
r
/
k
e
y
s
i
n
fi
n
ite
l
o
op
commit
|
commitdiff
|
tree
2009-09-05
C
h
ristop
h
e
r Le
e
a
d
ded lo
t
s of tests for
graphs with no
d
es instead
o
f
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stop
h
er
Lee
corrected the SQLGraph it
e
rator m
e
thods a
n
d
i
mprove
d
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
top
h
er Lee
testutil ne
e
ded new name of get_name_
c
ursor()
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher Lee
made get_name_curso
r
() use DBS
e
rverInf
o
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added iteration test
t
o g
r
a
p
h_test
.
p
y
commit
|
commitdiff
|
tree
2009-09-05
C
hristop
h
er Le
e
u
se
n
ew it
e
r
_keys() met
h
od
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
ad
d
ed bet
t
er it
e
r method
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
Merge commit 'remotes/ctb/xmlrpc_patches'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge co
m
mit
'remotes
/
mkszuba/fink'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
r
e
m
o
v
ed tests
/
oldt
e
s
ts/nlmsa_dm2_mega
t
e
st
.
py
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
topher L
e
e
Merge
commit 'remote
s
/mkszuba/docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
M
e
rg
e
co
m
m
it 'remotes/mksz
u
ba/cleanup'
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
Me
r
ge commit 'remotes
/
m
k
szuba/bsd
d
b_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
Lee
correcte
d
ClassicUnpickler refe
r
enc
e
to point to clas
s
ut
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher
Lee
removed unused
shelve import
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
remove
d
unused
i
mport item
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
M
e
rge branch 'tutorial'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added argu
m
ent to
make
Map
V
i
e
w
inverse able to reco
n
s
tit
u
te
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
added test of len() method for
S
Q
L
T
ab
l
e
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
is
t
opher
L
ee
add
e
d d
b
tutorial (mappin
g
) back t
o
guid
e
lis
t
t
able
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
mapp
i
n
g
t
u
t
o
rial just covers
m
appings, so rem
o
ved refere
n
ce
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
added MapView
inverse e
x
ample t
o
tu
t
orial
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
sto
p
her Lee
a
dded Map
V
iew docs
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
ad
d
ed test for trappi
n
g no
n
-
i
n
v
ertible MapV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
stopher Lee
adde
d
test for __inv
e
rt__
me
t
hod to MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added __invert__ method to
MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added materia
l
on SQL MapView
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
toph
e
r Lee
added sectio
n
s o
n
mapping to disk / wor
l
dbase
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
c
hanged
tit
l
e of
x
mlr
p
c
t
u
t
orial
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
ph
e
r
Lee
minor
fixes to g
e
ne
t
utoria
l
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
moved m
a
te
r
ial
out
of
w
o
rldbase
.
rst t
o
worldbase2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
sepa
r
ate tutor
i
al
o
n saving data
t
o
w
orldbase
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
to
p
her Lee
moved
s
chema
m
aterial to worldbase2
.
rst tutoria
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added
w
orldbase sec
u
rity wa
r
ni
n
g
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
i
stophe
r
Lee
more re
v
isions abou
t
d
o
wnloading
t
ut
o
r
i
al
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
s
to
p
he
r
Lee
revisions to download
=
T
rue
s
ect
i
on
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
p
her L
e
e
added d
e
p
e
ndency sec
t
ion in worldbase
.
rst
tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ri
s
t
opher
L
ee
adde
d
w
orldbase
.
d
i
r() t
u
torial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
p
her L
e
e
added intro secti
o
n
t
o worldbase
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Le
e
added Purpo
s
e to al
i
gnment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Lee
mo
r
e
l
ittl
e
changes to a
n
notation
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Lee
added Purpos
e
and intro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
moved new ba
s
i
c
tutorials to t
o
p of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
pher L
e
e
mino
r
fix to db_
b
asic
.
r
st
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Lee
u
p
date
s
to reference
/
sqlg
r
aph
.
r
s
t docs
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
top
h
er L
e
e
added SQL saving section to db tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ri
s
tophe
r
L
e
e
basic database tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher
L
e
e
ad
d
ed back __
l
en
_
_() to SQ
L
TableBa
s
e
.
How
in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
t
o
pher
L
e
e
ad
d
ed section on Prefix
U
nionDict
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
istopher
L
e
e
ad
d
ed section on p
l
ugging in
your own sequence pars
e
r
commit
|
commitdiff
|
tree
2009-09-02
Christopher
Lee
moved old material out t
o
compgen
o
m
i
cs
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
some
m
inor sequenc
e
tutoria
l
r
evisi
o
ns
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stoph
e
r
L
ee
added tutorial section o
n
accessing sequence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
spl
i
t up
bullet p
o
ints to
i
ntegrate in
t
o the code example
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r Lee
revised s
e
que
n
ce tutorial intro (fir
s
t p
a
rt)
commit
|
commitdiff
|
tree
2009-09-02
C
hris
t
o
p
her L
e
e
Merge commit 'remo
t
e
s
/ctb/xmlrpc_tutorial' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
Merge
c
omm
i
t
'
remotes/ctb/
d
oc_alignment'
i
nto tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
revi
s
ed gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
ad
d
e
d
G
FF3 example of gene building
commit
|
commitdiff
|
tree
2009-09-01
C
h
r
i
stopher Lee
M
e
rge commit 'remotes/m
k
s
z
u
b
a
/xmlrpc
_
tutorial
'
into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Chri
s
topher
L
ee
Mer
g
e
commit 'remotes/ctb
/
doc_ann
o
t
a
tions' in
t
o tu
t
ori
a
l
commit
|
commitdiff
|
tree
2009-09-01
Christophe
r
Lee
extrac
t
ed
material for separate database
t
ut
o
r
i
al
commit
|
commitdiff
|
tree
2009-08-29
Christopher
L
ee
removed unnecessar
y
s
t
at and
s
h
util impo
r
t
fr
o
m setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christopher Lee
fixed easy_instal
l
bug by protecting coordina
t
or
.
ResourceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christoph
e
r Lee
fixed
b
last
_
t
e
st
:
renamed test_seq_witho
u
t
_db(
)
t
o
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Le
e
M
e
rge co
m
mit 'remotes/
c
tb/minor_
f
i
x
es' into mi
n
o
r_fi
x
es
commit
|
commitdiff
|
tree
2009-08-04
Christopher
L
ee
fix port passing in te
s
t
util
.
T
e
s
tXMLRPCServ
e
r
commit
|
commitdiff
|
tree
2009-08-04
C
h
ris
t
opher Lee
use
p
air_identity_tuple() for blast_t
e
st formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher Lee
a
d
d
ed Bl
a
stBase
.
t
e
arDown() to close seqd
b
s as
t
hey
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
topher
L
ee
Me
r
ge comm
i
t 'remotes/mkszuba/doc_mak
e
'
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
istopher Le
e
Merg
e
commit 'remotes/mkszu
b
a
/
rp
m
'
commit
|
commitdiff
|
tree
2009-07-29
Ch
r
istophe
r
Lee
g
ot
r
id of BlastMapp
i
ng
.
warn_about_
s
elf_ma
t
ches()
commit
|
commitdiff
|
tree
2009-07-29
Chr
i
st
o
pher Lee
chan
g
e
d
NLMSA
pair
w
iseMode to allow
reporting of sel
f
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Ch
r
i
s
t
opher Lee
Merge
c
ommit
'remotes/mkszuba/debian'
commit
|
commitdiff
|
tree
2009-07-29
Christo
p
her Lee
retry reading port_file
i
n TestXML
R
PCServer seve
r
al
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Christ
o
pher Lee
added co
m
ments
t
o process
_
b
last(
)
commit
|
commitdiff
|
tree
2009-07-29
Christ
o
pher L
e
e
fix problem in
t
r
o
duced in process_blast()
by commit
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christopher Le
e
handle
mis
s
ing WINDIR
case on
Wi
n
dows
commit
|
commitdiff
|
tree
2009-07-28
Christo
p
h
e
r L
e
e
added SeqTranslator
.
__repr__()
commit
|
commitdiff
|
tree
2009-07-28
Chr
i
stopher
L
ee
Mer
g
e commit
'
r
e
mot
e
s
/
ctb/
s
i
mplef
r
ame_forma
t
db_
c
lea
n
up
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
C
h
ristopher Lee
Me
r
ge br
a
nch 'master' into simplefr
a
m
e
commit
|
commitdiff
|
tree
2009-07-28
C
h
ristoph
e
r L
e
e
add
e
d
SeqTranslator
.
iter_frames()
method, used in Bla
s
txMapp
.
.
.
commit
|
commitdiff
|
tree
2009-07-28
Christopher Le
e
M
erg
e
co
m
mit 'remotes/ctb
/
simpl
e
frame_d
o
c_align' into
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
C
h
ristopher Lee
p
rotect
2 m
o
re tests
u
sing bla
s
t_
e
nab
l
ed
(
) check
commit
|
commitdiff
|
tree
2009-07-27
C
hristopher Lee
f
ixe
d
syntax
e
rror
commit
|
commitdiff
|
tree
2009-07-27
Chri
s
t
o
pher
L
ee
added pyt
h
on 2
.
3 code f
o
r FileP
o
p
e
n to d
e
t
e
c
t bad exi
t
.
.
.
commit
|
commitdiff
|
tree
2009-07-27
C
hris
t
ophe
r
Lee
Merge branc
h
'no
_
e
dge
_
d
b'
commit
|
commitdiff
|
tree
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