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added SQLTable_Test.test_orderBy()
2009-09-09
Christopher Le
e
a
d
ded SQLTable_Test
.
test_orderBy()
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
updated
B
lock
G
enerator to wor
k
with ge
n
eralized orderB
y
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
stopher Lee
generalize
Bl
o
ckGenerator to w
o
rk with str
i
ng keys
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
pher Lee
fixed small
syntax error
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
pher Le
e
a
d
d
ed CursorClo
s
er(
)
mech
a
nis
m
commit
|
commitdiff
|
tree
2009-09-09
Christopher
Lee
BlockGenerator now w
o
rk
i
ng
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r
L
e
e
fi
x
es to prevent unnecessary
i
n
vocation of c
m
p()
commit
|
commitdiff
|
tree
2009-09-09
C
hr
i
st
o
phe
r
Lee
fixes to prevent unnecessary inv
o
cation of iter()
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
er Lee
m
ore t
e
s
t
s for un
w
a
nt
e
d
i
teration
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
er Lee
basic
c
all fo
r
bl
o
ck ge
n
era
t
o
r
based iter
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
added test fo
r
unwante
d
iteration
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher L
e
e
f
irst
impleme
n
tat
i
on of
B
l
ockGene
r
ator
it
e
rati
o
n
mec
h
anism
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
e
e
make itervalues / iteritems
use same
o
r
derBy
r
ules
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
g
e
nera
l
iz
e
d ite
r
_keys(), added o
r
der
B
y support
commit
|
commitdiff
|
tree
2009-09-08
Christ
o
pher Lee
created MySQLServerInfo class tha
t
uses SSCur
s
or f
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Ch
r
istopher Lee
added useStreaming option to m
y
sql_connect
(
)
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
fixed new_c
u
rsor() to p
r
op
a
g
ate arraysiz
e
setting
properly
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Lee
add
e
d test
f
or bug 84
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher Lee
fi
x
ed
bug 84
commit
|
commitdiff
|
tree
2009-09-05
C
h
r
i
stopher Lee
added t
e
st for GraphView
key
s
/ len
o
nly refl
e
cting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added inverse support for GraphView
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added test for
G
raphView inv
e
rse and imp
r
oved MapView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
h
ris
t
opher Lee
make GraphView rai
s
e KeyError if key has no ro
w
s in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
s
t
oph
e
r Lee
added test
s
for MapView iterators an
d
len
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
toph
e
r Lee
avoid possible
iter / key
s
infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Christopher
L
ee
adde
d
lot
s
of t
e
sts fo
r
graphs with no
d
es
instea
d
of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
corre
c
ted
t
he SQLGra
p
h iterator meth
o
ds and imp
r
oved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r
L
ee
testutil needed
new
name o
f
get_name
_
cursor()
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher Lee
made get_n
a
me
_
cursor()
us
e
DBServer
I
n
f
o
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added iterat
i
o
n
test t
o
graph_tes
t
.
py
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher
Le
e
use new iter_keys(
)
method
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
toph
e
r Lee
added bett
e
r
i
ter met
h
od
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
op
h
er Lee
M
erge
c
ommit 'remo
t
es/ctb/
x
m
lrp
c
_pat
c
hes'
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Le
e
M
e
rge commit
're
m
o
tes
/
mkszuba/fi
n
k'
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
is
t
op
h
er
L
ee
removed tests/old
t
ests/nl
m
sa_dm2_megates
t
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge commit 'remotes
/
mkszu
b
a/docfixes'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
Merge commit 'r
e
mot
e
s/mkszuba/cleanup
'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merg
e
commit 'r
e
mote
s
/
mkszuba/b
s
ddb_b
s
dd
b
3'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
topher
Le
e
c
o
rr
e
cted
Class
i
cUnpic
k
ler re
f
erence
t
o p
o
int to classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
removed un
u
sed shelve imp
o
r
t
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
removed un
u
sed import
item
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
Mer
g
e
b
ranch 'tuto
r
ial'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
added argum
e
nt
t
o m
a
k
e MapView invers
e
ab
l
e to reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
o
pher
Lee
adde
d
test
of len() m
e
thod fo
r
SQLTable
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Lee
add
e
d db
t
uto
r
ial (
m
apping
)
back
t
o guideli
s
t table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
oph
e
r
Lee
mapping tutorial
j
ust covers ma
p
pi
n
gs, so re
m
oved reference
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
opher Lee
added M
a
pView inverse e
x
ample to tutori
a
l
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher Lee
a
dded MapView do
c
s
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
add
e
d
test for trap
p
ing non-invertib
l
e
M
apVi
e
w
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher
L
e
e
add
e
d test for __inv
e
r
t__ method
t
o MapView
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
add
e
d
__inver
t
__ met
h
od to MapVie
w
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
dded material
o
n SQL
M
a
p
View
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
ad
d
ed sect
i
ons
o
n
ma
p
pin
g
to
d
i
sk / w
o
rldbase
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
changed title
o
f
xmlrpc tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
mino
r
f
ix
e
s to gene tu
t
orial
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher L
e
e
moved
material out o
f
worldba
s
e
.
rst to worldbase2
.
r
st
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
sepa
r
ate tutorial on savi
n
g d
a
ta to wo
r
l
d
base
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
mov
e
d sc
h
ema
m
a
ter
i
a
l to worl
d
base2
.
rs
t
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stop
h
er L
e
e
added
w
orldbase s
e
c
u
ri
t
y
w
a
r
ning
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
more rev
i
sions about do
w
nloading tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
e
e
r
evisions to download=True sec
t
ion
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
topher Lee
adde
d
dependenc
y
s
e
c
t
ion i
n
wo
r
ldbas
e
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
hristo
p
her Lee
added worldbase
.
dir() tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added intro se
c
tion to w
o
r
l
dbase
.
r
s
t
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added Purpose to alignment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
mor
e
littl
e
cha
n
ges to a
n
notation2
.
r
st
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
a
d
d
e
d Purpose and int
r
o to anno
t
ations2
.
rs
t
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristoph
e
r Lee
moved new
b
asic
t
utorials to to
p
of
g
uide list
commit
|
commitdiff
|
tree
2009-09-03
C
h
ri
s
top
h
er L
e
e
m
i
nor
fix to db_ba
s
ic
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
upd
a
tes to
reference/sqlgrap
h
.
rs
t
docs
commit
|
commitdiff
|
tree
2009-09-03
Chri
s
to
p
he
r
Lee
added SQL
s
aving
s
ection to db t
u
torial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
is
t
opher Lee
basic
d
atab
a
s
e
tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
C
hrist
o
ph
e
r
Lee
added
back
__len
_
_() to SQLT
a
b
leB
a
se
.
How
i
n
heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher L
e
e
added
secti
o
n
on PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
C
h
ri
s
t
oph
e
r
Lee
added secti
o
n on pluggin
g
in your own sequence parser
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
moved
old mat
e
rial out to com
p
g
enomics
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-02
C
hristo
p
her L
e
e
s
o
me minor sequence tutorial
r
e
visions
commit
|
commitdiff
|
tree
2009-09-02
Christop
h
er Lee
added tutorial section
o
n accessing
s
eque
n
ce
d
atabase
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
split up b
u
llet points t
o
i
n
tegrate in
t
o the
code example
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher Lee
revised
s
equ
e
nce t
u
torial intro (firs
t
part)
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
istopher Lee
Mer
g
e c
o
mm
i
t
'r
e
motes/ctb/xmlrpc_tutorial' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher L
e
e
Me
r
ge c
o
mmit 'r
e
mote
s
/ctb/do
c
_al
i
gnmen
t
' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
C
hri
s
toph
e
r
L
e
e
revised gf
f
3 cod
e
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher Le
e
added GFF3 example
o
f gene b
u
ilding
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge commit 'remotes
/
mkszuba/xmlrpc_
t
utorial'
i
nto
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge c
o
m
mit
'remotes/
c
tb/doc_annotations' into tutori
a
l
commit
|
commitdiff
|
tree
2009-09-01
Christo
p
her
Lee
extracted
m
aterial for
separate database tutor
i
al
commit
|
commitdiff
|
tree
2009-08-29
Chris
t
opher Le
e
removed unnece
s
sary stat and shutil import from set
u
p
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christoph
e
r Lee
fixed
e
asy_ins
t
all
b
u
g
b
y protecting coo
r
d
inator
.
ResourceF
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher
Lee
fix
e
d
blast_test: renamed
t
est_
s
eq_
w
ithout_db() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merge commi
t
'rem
o
t
e
s/ctb/mino
r
_fixe
s
'
into minor_fix
e
s
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
fix port
p
assing in test
u
til
.
TestXMLRPC
S
erver
commit
|
commitdiff
|
tree
2009-08-04
Chris
t
opher L
e
e
use p
a
ir_identity_tuple() for blast_test formatting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christop
h
er Lee
added BlastBase
.
tearDown() to close seqdbs as
t
h
ey
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
istopher
L
ee
Me
r
ge commit
'
remote
s
/mkszuba/doc_m
a
ke'
commit
|
commitdiff
|
tree
2009-08-04
Christophe
r
Lee
Merge commit 'remot
e
s/mkszuba/rp
m
'
commit
|
commitdiff
|
tree
2009-07-29
Christ
o
pher Lee
got ri
d
o
f
BlastMapping
.
w
a
r
n_abo
u
t_sel
f
_mat
c
hes()
commit
|
commitdiff
|
tree
2009-07-29
Christopher Le
e
change
d
NLMSA pairwise
M
ode to
a
llow reporting
of self
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
Ch
r
isto
p
her Lee
Merge commi
t
'remotes/mkszuba
/
debian'
commit
|
commitdiff
|
tree
2009-07-29
Christoph
e
r Lee
retr
y
reading port_file in TestXMLRPCServe
r
several
.
.
.
commit
|
commitdiff
|
tree
next