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added SQLTable_Test.test_orderBy()
2009-09-09
Chr
i
stop
h
er Lee
added SQLTabl
e
_
T
est
.
test_
o
r
d
e
rBy()
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
stophe
r
Lee
updated BlockG
e
n
erator to
w
ork
w
ith generalized orderBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
generalize
B
lockGenerato
r
to wo
r
k with str
i
ng
key
s
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
f
ixed small syntax err
o
r
commit
|
commitdiff
|
tree
2009-09-09
C
h
rist
o
pher
Lee
added CursorC
l
o
s
er() mechanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
B
lockGenerator now working
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
fixes
to prevent unneces
s
ary invocatio
n
o
f
c
mp()
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
her Lee
f
ixes to preve
n
t unnecessar
y
inv
o
cation of iter(
)
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
st
o
pher Lee
more te
s
t
s
f
or unwanted it
e
ration
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristoph
e
r Lee
basic cal
l
for
bl
o
ck
g
en
e
rator based
i
ter
commit
|
commitdiff
|
tree
2009-09-09
C
hris
t
oph
e
r L
e
e
added tes
t
for unwan
t
ed it
e
ration
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
first imple
m
en
t
ation of
Bl
o
ckGene
r
a
to
r
iteratio
n
mechanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher L
e
e
m
a
k
e itervalues
/ iterit
e
m
s use sa
m
e orderBy
rules
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
ge
n
e
r
alized iter_keys(), a
d
ded
orderBy supp
o
rt
commit
|
commitdiff
|
tree
2009-09-08
Ch
r
is
t
opher Le
e
created MySQLServ
e
rInfo c
l
ass that uses S
S
Cu
r
sor
for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
C
h
r
isto
p
he
r
Le
e
added useStreaming option
to mysql
_
connect()
commit
|
commitdiff
|
tree
2009-09-08
Chris
t
o
pher Lee
f
i
xed new_cursor() to propagat
e
arraysi
z
e s
e
tting
p
r
op
e
rly
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
add
e
d t
e
s
t for bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
f
ixed bug 8
4
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added test
f
or GraphView keys / len only refle
c
ting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stoph
e
r Lee
added inverse support fo
r
GraphView
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
a
d
ded
t
est for GraphView in
v
e
r
se and i
m
pro
v
ed MapView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
ma
k
e Grap
h
View raise KeyError if key
h
as no rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Lee
add
e
d test
s
for MapView iterators and len
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher
Lee
avoid po
s
s
i
bl
e
it
e
r / ke
y
s
infinite loop
commit
|
commitdiff
|
tree
2009-09-05
C
hristophe
r
Lee
added lots of tests
f
or
g
raphs wi
t
h nodes instead o
f
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Le
e
corrected the SQLG
r
aph iter
a
tor me
t
ho
d
s and impro
v
ed
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
testuti
l
nee
d
e
d
new name
of g
e
t
_
name_cu
r
sor()
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
made get_na
m
e_cur
s
or() u
s
e
DBServerInfo
commit
|
commitdiff
|
tree
2009-09-05
C
h
ris
t
opher Lee
ad
d
ed iteratio
n
test to gr
a
ph_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
use new iter_keys() method
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
a
d
ded better iter method
commit
|
commitdiff
|
tree
2009-09-04
C
hris
t
o
p
her Lee
Mer
g
e commit 'remotes/ctb/x
m
lrpc
_
patche
s
'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
Merge
commit 'remotes/mkszub
a
/fink'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
remo
v
ed
t
ests/old
t
ests/nlmsa_
d
m2_m
e
ga
t
est
.
py
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher
Lee
M
erge c
o
mmit 'remotes/m
k
szub
a
/
d
ocf
i
x
e
s'
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
i
stopher Lee
M
e
r
g
e
commit 'remote
s
/mkszuba/cleanup'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
Merge
commit 're
m
otes/mksz
u
ba/bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stophe
r
L
ee
corrected
C
lassicUnp
i
ckler
r
eference to poi
n
t to classutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
top
h
er Lee
removed u
n
used
shelve import
commit
|
commitdiff
|
tree
2009-09-04
C
hri
s
topher
Lee
rem
o
v
e
d unused import ite
m
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge bran
c
h
'tutori
a
l'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added
a
rgument
t
o make MapView i
n
verse
able to reconstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
ed test of len() method for SQLTa
b
le
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
ad
d
ed db tuto
r
i
a
l (
m
apping) ba
c
k to guide
l
ist tab
l
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
map
p
ing tutor
i
al just covers mappin
g
s, so
r
e
move
d
reference
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
op
h
er Lee
added MapView inverse example t
o
tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
p
h
e
r
Lee
added MapV
i
e
w
d
oc
s
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
added test for t
r
ap
p
ing non-inve
r
tib
l
e MapView
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
p
h
e
r
L
ee
added test for __
i
nvert__
method to
MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added __
i
nvert__ method to M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
a
d
de
d
material o
n
SQL MapView
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
added sections
on mappi
n
g to disk / worldbase
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
changed titl
e
of xml
r
pc tutorial
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
minor fixes
t
o g
e
n
e t
u
tori
a
l
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
mov
e
d m
a
terial out of worldbase
.
r
s
t to wor
l
d
base2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
separate
t
utorial
on
s
aving
d
ata to worl
d
base
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
moved sche
m
a
material to w
o
rl
d
base2
.
rs
t
tutori
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added
w
orldbase securit
y
w
arn
i
n
g
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
more re
v
i
s
io
n
s about downloading tuto
r
i
al
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
rev
i
s
i
ons to download=
T
rue se
c
t
i
o
n
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
added depe
n
dency section in worldba
s
e
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added
worldbase
.
dir() tu
t
orial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
pher Lee
ad
d
ed intro sect
i
on to
worldb
a
se
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
ad
d
ed Pu
r
pose to
a
lignment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher
L
ee
m
ore litt
l
e
c
hanges t
o
a
nnotation
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
added Purp
o
se and intro to annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher Le
e
mo
v
e
d
n
ew
b
asic tutorials to top of
guide li
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
m
i
nor fix t
o
db_
b
asi
c
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
i
s
topher L
e
e
updates to
r
eference/sqlgraph
.
rst do
c
s
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
s
t
o
p
h
er Lee
added
S
Q
L saving section to d
b
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
ist
o
pher Lee
basic database
t
ut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added b
a
ck __len_
_
() to SQLTabl
e
Base
.
How
i
n
h
eck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
p
her Lee
added section on P
r
efixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
Christopher L
e
e
a
d
ded section on
p
lugging in your own sequence
parser
commit
|
commitdiff
|
tree
2009-09-02
C
h
rist
o
pher Lee
moved
o
l
d
material out to
c
ompgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
is
t
op
h
er Lee
some minor sequence tutori
a
l revisions
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher
L
ee
added
t
utorial section on acce
s
sing sequence
database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
split up bullet po
i
nts
to integrate i
n
to the code example
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
toph
e
r Lee
revi
s
ed sequence tutor
i
al int
r
o (first part)
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r Lee
M
e
rg
e
commit 'remotes/c
t
b/xm
l
rpc_tutorial' into tutor
i
al
commit
|
commitdiff
|
tree
2009-09-02
Ch
r
istoph
e
r Lee
Merge commit 'remotes/ct
b
/doc_a
l
i
g
nment
'
into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
t
oph
e
r
Lee
revised g
f
f3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
ee
a
dd
e
d GFF3
example of ge
n
e buildin
g
commit
|
commitdiff
|
tree
2009-09-01
Christop
h
er
L
ee
M
erge commit 'r
e
mo
t
es/mkszuba/xmlrpc_tutorial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christopher
L
e
e
Merge commit 'remotes/ct
b
/doc_annotations
'
into tutorial
commit
|
commitdiff
|
tree
2009-09-01
Christo
p
he
r
Lee
extracted material for s
e
par
a
te dat
a
base
t
utorial
commit
|
commitdiff
|
tree
2009-08-29
Chri
s
topher Lee
remov
e
d unne
c
ess
a
ry stat and s
h
util
i
mport
from setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christ
o
pher Lee
fixed easy_ins
t
a
ll bug by prot
e
ctin
g
co
o
rd
i
na
t
or
.
ResourceF
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christop
h
er Lee
fix
e
d blast_test: renam
e
d
test_seq_without_db(
)
to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Mer
g
e commit
'
remotes/ctb/minor_fixes' into minor_fixes
commit
|
commitdiff
|
tree
2009-08-04
C
h
risto
p
her Lee
fix port p
a
ssing
i
n
t
e
stuti
l
.
Tes
t
X
MLRPCServer
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
use pair_id
e
ntity_tuple() for blast_test fo
r
matting
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chri
s
top
h
er Lee
a
d
ded Bl
a
stBase
.
tear
D
own() to
close
s
e
qd
b
s
as they
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chr
i
stopher
L
ee
M
e
rge commi
t
'remotes/mkszuba/doc_make'
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
Merge comm
i
t '
r
em
o
tes/mkszuba/rpm
'
commit
|
commitdiff
|
tree
2009-07-29
Christopher
L
e
e
got rid of BlastM
a
p
ping
.
w
arn_about_
s
elf_
m
at
c
hes()
commit
|
commitdiff
|
tree
2009-07-29
C
hristopher
L
ee
changed NLMSA pairwiseMode to allo
w
reportin
g
of self
.
.
.
commit
|
commitdiff
|
tree
2009-07-29
C
h
ristopher L
e
e
M
erge
c
omm
i
t 're
m
otes/mkszuba/debian'
commit
|
commitdiff
|
tree
2009-07-29
Chris
t
opher Lee
retry reading port_file in TestXMLRPCSe
r
ver s
e
vera
l
.
.
.
commit
|
commitdiff
|
tree
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