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made SQLTableClustered use standard iterator methods, orderBy. Added tests.
2009-09-10
C
h
ri
s
topher Lee
made SQL
T
able
C
lustered
use
standard iterat
o
r
methods
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
c
h
anged BlockGenerator to select multiple colu
m
n
s at
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Chris
t
opher Lee
a
dde
d
su
p
port f
o
r
n
e
w iterat
i
on approach to
S
QLTableMu
l
tiN
o
Cache
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
Merge commit 're
m
ote
s
/ctb/t
u
t
o
rial'
i
nto tryme
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
Merge commit 'r
e
motes/ct
b
/xml
r
pc_patc
h
es' in
t
o tryme
commit
|
commitdiff
|
tree
2009-09-10
C
h
ristopher
L
ee
ad
d
ed order-by pickli
n
g test
commit
|
commitdiff
|
tree
2009-09-10
Christopher
Lee
add
e
d SQLTable
pickle
t
e
st
commit
|
commitdiff
|
tree
2009-09-10
Ch
r
is
t
op
h
er Lee
added tests
w/o serverSide
C
ursors o
r
blockIterato
r
s
commit
|
commitdiff
|
tree
2009-09-10
Christopher Le
e
added server
S
ideCu
r
so
r
s and b
l
ockIterators options
commit
|
commitdiff
|
tree
2009-09-10
Christop
h
er Lee
e
xpanded random v
a
lue order by test
commit
|
commitdiff
|
tree
2009-09-09
Christopher
Lee
Merge comm
i
t
'rem
o
t
es/mkszu
b
a/sqlta
b
le_orderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
C
hristopher Lee
added
S
QLTable_Test
.
test
_
orderBy()
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
s
topher L
e
e
updated BlockGenerator to work with generalized
orderBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Christo
p
her
Lee
ge
n
erali
z
e Bloc
k
Ge
n
erator to
wo
r
k
with
s
tring k
e
ys
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
fixed
smal
l
s
yntax error
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
toph
e
r Lee
added
C
ursorCloser() mecha
n
ism
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
B
lockGenerator now
w
o
r
king
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher Lee
fi
x
es to
p
r
even
t
u
n
nec
e
s
s
a
ry invocation of cm
p
(
)
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
to
p
her Lee
fi
x
es
to prevent unneces
s
ary invocatio
n
of iter()
commit
|
commitdiff
|
tree
2009-09-09
C
hri
s
topher L
e
e
m
ore tests for unwanted iteration
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
topher Lee
basic cal
l
fo
r
block generator based iter
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
added
t
est fo
r
unw
a
nted iteration
commit
|
commitdiff
|
tree
2009-09-09
Chr
i
stopher Lee
first im
p
l
ementation of BlockGenera
t
or iteratio
n
m
echanis
m
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
m
a
k
e iterva
l
ues / iterit
e
ms use s
a
me orderBy rul
e
s
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
e
r
L
e
e
g
enerali
z
ed ite
r
_key
s
(),
a
d
d
ed orderBy support
commit
|
commitdiff
|
tree
2009-09-08
Chr
i
stoph
e
r Lee
c
reate
d
MySQLServerInfo c
l
ass that uses
SS
C
ursor for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
added useS
t
rea
m
i
ng
option to m
y
sql_connect()
commit
|
commitdiff
|
tree
2009-09-08
Chr
i
stopher Lee
fixe
d
new_cursor() to propag
a
t
e
arraysize s
e
ttin
g
properly
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added test for bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
fixed bug
84
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
top
h
er L
e
e
added
t
e
st for GraphView keys
/
len
only
reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
added
inverse support for Gra
p
hVie
w
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added t
e
st for Gra
p
hVi
e
w inve
r
s
e
and i
m
proved
M
apVi
e
w
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher L
e
e
make Graph
V
ie
w
raise
KeyError if key has
n
o
r
ows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Lee
a
d
ded t
e
sts for MapVi
e
w i
t
era
t
ors and
l
en
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istop
h
er Lee
av
o
id possible
i
ter / keys infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher
Lee
added lot
s
o
f te
s
ts for grap
h
s with nodes
i
n
s
tead of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
corrected t
h
e
SQLGraph
iterator methods a
n
d imp
r
oved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher Lee
t
estutil needed new
n
ame of get_name_cur
s
or()
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher
L
ee
ma
d
e get_name_cu
r
sor() us
e
DBServerI
n
fo
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er Lee
a
dded iterati
o
n
test to gra
p
h_tes
t
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
us
e
n
ew iter_
k
e
y
s() method
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Le
e
ad
d
ed
better iter
method
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
p
h
e
r Lee
Merge commit 'remotes/ctb/xml
r
pc
_
p
at
c
hes'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher
L
e
e
Me
r
ge commit '
r
emotes/mkszuba/fink'
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
removed tests/oldte
s
ts/
n
lmsa_dm2_
m
egatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
M
erge
comm
i
t 'remotes/
m
kszuba
/
docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
e
r
Lee
Me
r
ge commit
'remotes/mks
z
uba/clea
n
up'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
Merge commit 'remotes/mk
s
zuba/bsddb_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
t
o
pher L
e
e
cor
r
e
cted ClassicUnpick
l
er reference to point
t
o cl
a
s
sut
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
re
m
oved u
n
used
s
helve
i
mport
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
p
her Lee
rem
o
ved unuse
d
import item
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
Merge
bra
n
ch 'tuto
r
ial'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
sto
p
her Lee
add
e
d argument to make M
a
p
View i
n
verse able to r
e
constitut
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
added
t
est of len() met
h
o
d
f
or SQLTa
b
le
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
added db tutori
a
l (map
p
ing) back to guideli
s
t
t
able
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
mappi
n
g tut
o
ria
l
just cov
e
rs m
a
p
p
ings, so
r
emoved refe
r
e
n
ce
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
add
e
d MapVi
e
w
inverse ex
a
mple to tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er L
e
e
added MapView doc
s
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
added te
s
t for trapping non-invertible Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
p
her Lee
added t
e
st for _
_
invert
_
_
met
h
od to MapView
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
added __inver
t
__ method to MapView
commit
|
commitdiff
|
tree
2009-09-04
C
hri
s
t
op
h
er Lee
added m
a
teria
l
o
n
SQL MapV
i
ew
commit
|
commitdiff
|
tree
2009-09-04
C
h
risto
p
h
er Lee
added se
c
tio
n
s
o
n mapping to di
s
k /
w
orl
d
base
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristophe
r
L
e
e
c
h
anged title of xmlrpc
tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
minor fixes to gene tutorial
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
moved
m
aterial out
o
f worldbase
.
rst to w
o
rldb
a
s
e
2
.
rs
t
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
st
o
pher Lee
separate tutor
i
al on
saving data t
o
worldbase
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher Lee
moved sc
h
ema mat
e
rial
to worldbase2
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r
L
ee
added worldbase
secur
i
t
y warning
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istop
h
er Le
e
more re
v
is
i
o
ns a
b
out download
i
ng tuto
r
i
al
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher Lee
r
e
visions to
download=Tru
e
se
c
ti
o
n
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Lee
added depen
d
ency section
in worl
d
base
.
rst t
u
torial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worl
d
base
.
dir
(
) tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added int
r
o section to worldba
s
e
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
hristoph
e
r Lee
added Purpose to al
i
gnment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istop
h
er Lee
m
ore
l
i
ttle
changes t
o
anno
t
a
tion2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
i
stopher
L
ee
adde
d
Purp
o
se an
d
intr
o
to anno
t
ati
o
ns2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
moved new basic
t
utorials to top of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
minor fix to db_basic
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
h
er Lee
updat
e
s to reference/sqlgraph
.
rst d
o
cs
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added S
Q
L saving se
c
tion to db tutorial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istop
h
er Le
e
basic database tut
o
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
i
stopher Lee
add
e
d bac
k
__len_
_
(
)
to SQLTableBase
.
How in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
added section on PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
ophe
r
L
e
e
added sect
i
o
n
on plugg
i
ng in
y
our own se
q
uence parser
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
i
st
o
pher
L
ee
mov
e
d
o
l
d
material out to compgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
ee
some min
o
r sequenc
e
tutoria
l
rev
i
s
i
ons
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
a
d
d
ed
tutori
a
l section on accessin
g
seq
u
ence
d
ata
b
ase
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
sp
l
i
t
up
bullet
points to in
t
egrate into the code
e
xample
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
revise
d
s
e
quence tutorial
i
ntro (f
i
rst
p
art)
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristopher L
e
e
Merge com
m
it 'rem
o
te
s
/
ctb/
x
m
l
rpc_tutorial' into tut
o
r
ial
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
Merge
c
ommit 'remotes/ctb/doc_alignmen
t
'
into tutor
i
al
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
istopher Lee
revised gff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
added GFF3
e
xample of gene bui
l
d
in
g
commit
|
commitdiff
|
tree
2009-09-01
Ch
r
istop
h
er Lee
Merg
e
commit 'rem
o
tes
/
mkszu
b
a/xmlrpc_tutorial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
C
h
ristopher Lee
Merge commit 'r
e
motes/ctb/do
c
_
a
nnotations'
i
nt
o
tu
t
orial
commit
|
commitdiff
|
tree
2009-09-01
Christop
h
er Lee
extr
a
cted material fo
r
separate
d
atabas
e
t
u
torial
commit
|
commitdiff
|
tree
2009-08-29
Christopher Lee
removed unnecessary stat and
sh
u
til import fr
o
m
s
etup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Chr
i
sto
p
he
r
L
e
e
fixed e
a
sy_install bug by
pr
o
tecti
n
g
coo
r
dinato
r
.
ResourceFil
.
.
.
commit
|
commitdiff
|
tree
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