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made SQLTableClustered use standard iterator methods, orderBy. Added tests.
2009-09-10
Christop
h
er L
e
e
made SQLTab
l
eClustered us
e
standard iterator methods
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
Christop
h
er Lee
changed BlockGener
a
tor to sele
c
t mult
i
ple co
l
umns at
.
.
.
commit
|
commitdiff
|
tree
2009-09-10
C
h
ristopher Le
e
a
dded su
p
port
for new iteration approach
to SQLTableMultiNoCac
h
e
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
topher Lee
Merge
c
ommit 'remotes/c
t
b/tutoria
l
' i
n
to tryme
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
topher Lee
Merg
e
c
o
mmit
'remotes/
c
tb/xml
r
pc_patches' int
o
tryme
commit
|
commitdiff
|
tree
2009-09-10
C
h
ri
s
t
ophe
r
Lee
add
e
d o
r
der-by picklin
g
test
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
added
S
QLTable p
i
ckle test
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
topher
Lee
a
d
de
d
t
e
sts w/o
s
erve
r
S
ideCursors
or bl
o
ckI
t
e
rators
commit
|
commitdiff
|
tree
2009-09-10
C
hristopher
L
ee
added serve
r
SideCursors and blockIterators options
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
t
o
pher
Lee
expanded random value order by test
commit
|
commitdiff
|
tree
2009-09-09
C
h
ris
t
opher Lee
M
e
r
g
e co
m
m
i
t 'r
e
mot
e
s/mks
z
u
ba/sqltable_orderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Christopher Le
e
a
d
ded SQLTable_Test
.
te
s
t_or
d
erBy()
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Lee
up
d
a
t
ed B
l
ock
G
e
n
erator to
work w
i
th generalized orderBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher L
e
e
ge
n
eralize BlockGenera
t
or to
w
ork w
i
th str
i
ng
keys
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
fixed sm
a
ll synt
a
x erro
r
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher Lee
added CursorCloser() mec
h
a
n
ism
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher
L
ee
Bl
o
ckGenerator now working
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
top
h
e
r
Lee
fixes to prevent un
n
e
c
ess
a
r
y
invocation
o
f
c
m
p()
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r Le
e
fixes t
o
prevent
u
nnecessary invocatio
n
of iter()
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
more tests for unwanted i
t
e
r
ation
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
b
asic
c
all for block generator ba
s
ed iter
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
added test
for
u
nwanted iteration
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher Lee
f
irst implemen
t
a
tion of BlockGenerator iteration
mechan
i
s
m
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher Lee
make itervalu
e
s / iterite
m
s use sam
e
orderBy rules
commit
|
commitdiff
|
tree
2009-09-09
Christop
h
er Lee
g
e
neralized iter_ke
y
s(), added orderBy supp
o
rt
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
created MySQLServerInfo
c
la
s
s that uses SSCur
s
or
f
or
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
C
hri
s
t
o
pher Le
e
add
e
d
u
seStrea
m
ing o
p
tion to my
s
ql_connec
t
()
commit
|
commitdiff
|
tree
2009-09-08
Chr
i
s
topher L
e
e
f
i
x
e
d
new_cur
s
or()
t
o
propagate ar
r
a
ysize
setting prope
r
ly
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher
L
ee
a
dded te
s
t for
b
ug 84
commit
|
commitdiff
|
tree
2009-09-05
Christophe
r
Lee
f
i
xe
d
bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
added test for GraphView key
s
/ len o
n
ly
reflecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher L
e
e
added inv
e
r
se
s
upport
fo
r
GraphVi
e
w
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
adde
d
test for GraphView inverse
a
nd improved
Ma
p
View
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristoph
e
r Lee
m
a
ke G
r
aphVie
w
r
a
ise KeyErr
o
r if
k
ey has no
rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
topher Lee
add
e
d test
s
fo
r
MapView i
t
erato
r
s and le
n
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
a
v
oid
p
ossibl
e
iter
/ keys inf
i
nite loop
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
h
e
r Le
e
a
d
ded lots o
f
test
s
for gra
p
h
s
wi
t
h nodes instead of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
h
ris
t
o
p
he
r
Lee
correct
e
d the
SQLGraph i
t
erator methods and i
m
prov
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
s
topher Le
e
tes
t
util
nee
d
e
d
new
name of get_name_cu
r
sor()
commit
|
commitdiff
|
tree
2009-09-05
C
hri
s
topher Lee
m
a
de get_name_c
u
rsor() us
e
DB
S
erverInfo
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added it
e
rat
i
on test to graph_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
use new iter_keys(
)
method
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Lee
a
d
d
ed better iter met
h
od
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
stopher
Lee
Me
r
ge commit 'r
e
motes/ctb/xmlrpc_p
a
tches'
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
ophe
r
Lee
Merge commit 'remotes/mkszub
a
/fink'
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
s
t
opher L
e
e
removed tests/oldt
e
sts/nlmsa_dm2_mega
t
e
st
.
py
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristop
h
er Lee
Merge c
o
mmit 'remot
e
s/mkszuba/
d
ocfixes'
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
Merge
commit 'remo
t
es/mkszuba/cleanup
'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
Merge commit 'remotes/mks
z
u
b
a/bsdd
b
_bsddb3'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
corrected ClassicU
n
pickl
e
r reference
t
o poin
t
to class
u
til
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
e
r
Lee
re
m
oved unused shelve import
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
removed unus
e
d
i
mport item
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
Merge bran
c
h 'tuto
r
ia
l
'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
added ar
g
ument to make
M
apView inverse able to
r
econstitute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
op
h
e
r
L
e
e
add
e
d test of len() m
e
thod f
o
r SQLTabl
e
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
d
ded db tutorial (
m
a
p
ping) back to g
u
idelist
t
able
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
mapping tutor
i
a
l just covers mappings,
so remo
v
ed reference
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
phe
r
Lee
added MapView in
v
er
s
e examp
l
e to tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added MapView docs
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added test for trappin
g
non-inve
r
tible MapView
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r Lee
ad
d
e
d
t
e
st for __invert__
m
ethod to MapView
commit
|
commitdiff
|
tree
2009-09-04
Ch
r
istopher Lee
added __invert__ method to MapView
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
e
r
Lee
added
material o
n
SQL Map
V
iew
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
added sections on mapping to
disk / world
b
ase
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
ch
a
nged
t
itle of xmlrpc tutoria
l
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
minor f
i
xe
s
t
o gene tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Lee
moved material out
o
f worldbas
e
.
rst to world
b
ase2
.
rs
t
commit
|
commitdiff
|
tree
2009-09-04
Chri
s
topher
Lee
s
e
pa
r
ate tuto
r
ial
o
n savi
n
g
d
ata to w
o
rldbase
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
moved sch
e
ma mate
r
ial to w
o
r
ldb
a
se2
.
rst tutoria
l
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added worldbase security warning
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Le
e
more revi
s
ions about d
o
wnloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
hristophe
r
Lee
revisions
t
o do
w
nload=True section
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
add
e
d
d
ependency se
c
tion
i
n worl
d
b
ase
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
r
istopher Lee
added worldbase
.
dir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
adde
d
intro sec
t
ion to w
o
r
ld
b
ase
.
rst tutoria
l
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
added Purpose t
o
alignment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er L
e
e
m
o
r
e
l
i
ttle changes to annotation2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
added Purpose and intro t
o
annotations2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
moved new ba
s
ic tutorials to top of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
minor fi
x
to db_basi
c
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristophe
r
Lee
updates to referen
c
e/sqlg
r
a
ph
.
rst d
o
c
s
commit
|
commitdiff
|
tree
2009-09-03
Chr
i
stopher Lee
add
e
d SQL saving section
t
o db tutor
i
al
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
basic
d
a
tabase tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
ee
added b
a
ck __len__() to
SQLTableBase
.
H
o
w in
heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
adde
d
sectio
n
on PrefixUnionDict
commit
|
commitdiff
|
tree
2009-09-02
Chri
s
topher Lee
adde
d
se
c
t
i
on on
p
lugging in
your
o
wn seq
u
e
nce parser
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
her Lee
moved old mat
e
ria
l
out to c
o
mpg
e
n
o
mics
.
rs
t
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stopher
Lee
some minor sequence tutorial rev
i
sions
commit
|
commitdiff
|
tree
2009-09-02
Christopher
L
ee
a
dded tutoria
l
sect
i
on on accessing sequence database
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
isto
p
her Lee
sp
l
it up
bu
l
let
p
oint
s
to
i
ntegrate into
the code
e
xampl
e
commit
|
commitdiff
|
tree
2009-09-02
Christop
h
er Lee
revised
se
q
uenc
e
tutorial intro (fir
s
t part)
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
opher L
e
e
Merge c
o
m
mit 'r
e
motes/c
t
b/
x
mlr
p
c_tutorial' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
C
h
ris
t
opher Lee
Merge com
m
it 'remotes/ctb/doc_
a
lignment' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
revised
g
ff3 code
commit
|
commitdiff
|
tree
2009-09-02
Christopher
Lee
added GFF3 example of gene building
commit
|
commitdiff
|
tree
2009-09-01
Chr
i
stopher
Lee
Merge commit 'remotes/mkszuba/xmlrpc
_
t
ut
o
rial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge c
o
mmit 'remotes
/
ctb/doc_annota
t
ion
s
' i
n
to tutor
i
al
commit
|
commitdiff
|
tree
2009-09-01
Chr
i
stop
h
er L
e
e
extracted material f
o
r sepa
r
a
t
e d
a
tabase tu
t
or
i
al
commit
|
commitdiff
|
tree
2009-08-29
Christopher Lee
removed unnecessary stat and shutil import from setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Chr
i
stopher Lee
fixed easy_i
n
stall
b
ug by
p
rot
e
cting coord
i
nator
.
Re
s
ourceFil
.
.
.
commit
|
commitdiff
|
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