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Merge commit 'remotes/ctb/tutorial' into tryme
2009-09-10
Christopher
Lee
Merg
e
commit 'remotes/ctb/
t
u
torial' into trym
e
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
tophe
r
Lee
Merg
e
commit 're
m
otes/ctb/xmlrpc_patches'
i
nto tryme
commit
|
commitdiff
|
tree
2009-09-10
Chris
t
opher Lee
added order-by pi
c
kling test
commit
|
commitdiff
|
tree
2009-09-10
C
hristopher
Lee
added SQLTab
l
e pickle test
commit
|
commitdiff
|
tree
2009-09-10
Chri
s
topher Le
e
a
d
ded t
e
sts w/o ser
v
erSi
d
e
C
ursors or blockItera
t
ors
commit
|
commitdiff
|
tree
2009-09-10
Christ
o
pher L
e
e
a
dded serverSide
C
ursors and blockIterat
o
rs optio
n
s
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
expa
n
d
e
d
random value
order by test
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
Mer
g
e com
m
i
t
'remo
t
es/mkszuba/sqltable_orderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chri
s
topher Lee
added SQLTable_
T
e
st
.
test_orderBy()
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
updated Bloc
k
Generator to
work with generaliz
e
d
ord
e
rBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istopher Lee
g
eneralize
B
lo
c
kG
e
nerator to work w
i
th string keys
commit
|
commitdiff
|
tree
2009-09-09
Christopher
L
ee
fixed sm
a
l
l
s
y
nta
x
error
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r
Lee
a
dde
d
CursorCloser()
m
echa
n
i
s
m
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
B
lockGener
a
tor
now workin
g
commit
|
commitdiff
|
tree
2009-09-09
C
h
ri
s
to
p
her L
e
e
fixes to
prevent unnece
s
sary invo
c
ation of cmp
(
)
commit
|
commitdiff
|
tree
2009-09-09
Christopher Le
e
fixes to pr
e
vent unneces
s
a
ry invocation of it
e
r
(
)
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
mor
e
tests for
unwanted iteratio
n
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
ba
s
ic ca
l
l
for block ge
n
e
r
ator based iter
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r
L
ee
added t
e
s
t
for unwanted iterati
o
n
commit
|
commitdiff
|
tree
2009-09-09
C
h
ris
t
opher Lee
first
implem
e
nta
t
ion of
B
l
ockGene
r
ator ite
r
ation
mechani
s
m
commit
|
commitdiff
|
tree
2009-09-09
C
hr
i
stoph
e
r Lee
m
ake ite
r
values /
i
teritems use same orderBy
r
ule
s
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
g
e
neralized it
e
r_k
e
ys()
,
added o
r
derBy support
commit
|
commitdiff
|
tree
2009-09-08
Christopher
Lee
created
M
ySQLServerIn
f
o class tha
t
uses SSCursor f
o
r
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
a
dded useStre
a
ming o
p
t
i
o
n t
o
mysql_co
n
nect()
commit
|
commitdiff
|
tree
2009-09-08
Chri
s
topher
L
ee
fixed new
_
cursor() to prop
a
gate arr
a
ysize setting properly
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
sto
p
her Lee
added
t
est
f
or bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher
Lee
fix
e
d bug 84
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
added test for GraphView keys / len
o
nly reflecti
n
g
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christop
h
er Lee
added inver
s
e support for Gr
a
phView
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
added test
for GraphView i
n
verse and improve
d
MapV
i
ew
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
make Gra
p
hView raise Ke
y
Error
i
f key has no
r
ows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
pher Lee
added tests
for
M
apVi
e
w iterators a
n
d
l
en
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
st
o
ph
e
r
Lee
avoi
d
possible iter / keys infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
ist
o
pher Lee
added lots of tests for graphs wi
t
h nodes instead of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
top
h
er Lee
corrected th
e
SQLGraph
i
terator
methods and
improved
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
t
estutil
n
eeded ne
w
n
a
me
o
f
get_na
m
e_cursor
(
)
commit
|
commitdiff
|
tree
2009-09-05
Christophe
r
Lee
made ge
t
_name_curs
o
r() use DBServer
I
nfo
commit
|
commitdiff
|
tree
2009-09-05
Chris
t
opher Lee
a
dded i
t
eration test to graph_test
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
her Lee
use
n
ew iter_keys() method
commit
|
commitdiff
|
tree
2009-09-05
Christopher
L
ee
a
dded
better
i
ter met
h
od
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merg
e
commit
'remo
t
es/ctb/xmlr
p
c_patche
s
'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
M
erge co
m
mit 'remote
s
/mkszub
a
/fink'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
e
r Lee
remov
e
d tests/oldt
e
sts/nlmsa_dm2_mega
t
est
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
L
ee
Me
r
ge
c
o
mmit 'remotes/mksz
u
b
a/docfixe
s
'
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
istopher Lee
Merge commit 'remotes
/
m
k
szub
a
/
c
l
eanup'
commit
|
commitdiff
|
tree
2009-09-04
C
hr
i
stopher Lee
Merg
e
com
m
it 'remotes/
m
ks
z
uba
/
bsddb
_
bs
d
db3'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ris
t
opher Lee
corrected ClassicUn
p
i
ckler referenc
e
to po
i
n
t
to clas
s
u
t
i
l
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
removed un
u
sed shelve im
p
ort
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
r
emoved unused
i
mport
i
tem
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
Merge b
r
anch 'tutorial'
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
i
s
topher
Lee
added ar
g
u
m
ent to make M
a
p
Vie
w
inverse able t
o
rec
o
nst
i
tute
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher
L
ee
added test of len() me
t
hod for SQLTable
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
ad
d
ed db tut
o
r
i
al (mapping) back to guidelis
t
table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
m
apping
t
utorial just covers m
a
p
pings,
s
o remo
v
e
d refere
n
ce
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christ
o
pher Lee
a
d
ded MapView
inver
s
e
example to
t
u
t
orial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
added MapView do
c
s
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her
L
e
e
ad
d
ed
te
s
t
for
t
rapping non
-
i
n
vertible MapView
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher
Lee
a
dded test for __invert_
_
method to MapView
commit
|
commitdiff
|
tree
2009-09-04
Christophe
r
Le
e
added _
_
in
v
ert__ me
t
h
o
d to MapView
commit
|
commitdiff
|
tree
2009-09-04
C
h
ris
t
oph
e
r
Lee
ad
d
ed mat
e
r
i
al on S
Q
L MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
added s
e
ct
i
ons on
m
a
ppin
g
to disk / worldbase
commit
|
commitdiff
|
tree
2009-09-04
Christopher L
e
e
c
h
anged title of x
m
lrpc tut
o
rial
commit
|
commitdiff
|
tree
2009-09-04
C
h
ri
s
topher L
e
e
mino
r
fixes to gene t
u
torial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
moved material out
o
f wo
r
l
dbase
.
rst to worldbase2
.
rst
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
sepa
r
ate t
u
torial on
s
aving data
to worldbase
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
istopher Lee
m
oved s
c
hema material to worldbase2
.
rst tut
o
rial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
added worldbase
security
w
arning
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Le
e
more re
v
isions about d
o
wnloading tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
revis
i
ons
to download=True section
commit
|
commitdiff
|
tree
2009-09-03
Christo
p
her Lee
added dependen
c
y section i
n
worldbase
.
rst tuto
r
ial
commit
|
commitdiff
|
tree
2009-09-03
C
hristophe
r
L
e
e
add
e
d
wor
l
dbase
.
dir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher Lee
added in
t
ro section to worldbase
.
rst t
u
to
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
ad
d
ed Purpose to ali
g
nment
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
more lit
t
le changes to annotation
2
.
r
st
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristoph
e
r Lee
added Purp
o
se and intro to anno
t
ation
s
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
moved new basic
t
u
t
oria
l
s to
t
op of guide list
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
min
o
r
fix
to db_basic
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
updates to reference/sqlgr
a
ph
.
rst
d
ocs
commit
|
commitdiff
|
tree
2009-09-03
Christopher
Lee
adde
d
SQL saving sec
t
ion t
o
db tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Le
e
basic database tu
t
o
r
ial
commit
|
commitdiff
|
tree
2009-09-03
Christopher
L
e
e
added bac
k
__len__() to SQLTa
b
leBase
.
How
i
n heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
C
hristopher Lee
added
section on Pr
e
f
i
x
U
nion
D
ict
commit
|
commitdiff
|
tree
2009-09-02
Christop
h
er Le
e
added secti
o
n on p
l
ugg
i
ng in your own
s
equen
c
e parser
commit
|
commitdiff
|
tree
2009-09-02
Christopher Le
e
moved old mat
e
rial out to
c
o
mpgenomics
.
rst
commit
|
commitdiff
|
tree
2009-09-02
C
hri
s
top
h
er Le
e
some minor sequence t
u
tor
i
al
revisions
commit
|
commitdiff
|
tree
2009-09-02
C
hrist
o
p
h
e
r
L
e
e
added tu
t
orial
s
ection on accessing
s
equence databa
s
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christopher
Lee
s
p
lit up bullet poi
n
t
s
t
o i
n
tegrate into the code example
commit
|
commitdiff
|
tree
2009-09-02
C
hr
i
stopher
L
ee
revi
s
ed
sequen
c
e
tutorial intro (first part)
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristopher Le
e
Merge commit 'remotes/ctb/x
m
lrpc_tu
t
orial' into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
oph
e
r
Lee
M
e
rge
c
ommi
t
'rem
o
t
e
s
/
c
tb/doc_ali
g
nme
n
t'
i
nto tut
o
r
ial
commit
|
commitdiff
|
tree
2009-09-02
Christo
p
her Lee
revised g
f
f3 code
commit
|
commitdiff
|
tree
2009-09-02
C
h
ristop
h
er
L
ee
add
e
d GFF3 exa
m
ple
o
f gene
b
uild
i
n
g
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge comm
i
t
'
r
e
motes/mkszu
b
a/xmlrpc_tutorial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
C
hr
i
stopher Lee
Merge com
m
it 'r
e
motes/ctb/
d
oc_annotatio
n
s' into tutorial
commit
|
commitdiff
|
tree
2009-09-01
C
h
ristopher Lee
extracted ma
t
erial for separate da
t
abas
e
tuto
r
i
a
l
commit
|
commitdiff
|
tree
2009-08-29
Christoph
e
r L
e
e
removed unne
c
essary stat an
d
s
h
util
i
mport fro
m
s
et
u
p
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christophe
r
Le
e
fi
x
ed easy_inst
a
ll bug by
protecting co
o
rdinator
.
Re
s
ourceFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Chr
i
stopher Lee
f
ixed blast
_
test: renam
e
d test_seq_without_db() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Christopher
L
ee
Merge commit
'remotes
/
ctb/minor_fixes'
into minor_fixes
commit
|
commitdiff
|
tree
2009-08-04
Christopher
L
e
e
f
ix port passing in testutil
.
Test
X
MLRPCServ
e
r
commit
|
commitdiff
|
tree
next