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Merge commit 'remotes/ctb/tutorial' into tryme
2009-09-10
Christo
p
he
r
Lee
Merge com
m
it
'remotes/ctb/tut
o
rial'
i
nto try
m
e
commit
|
commitdiff
|
tree
2009-09-10
Christophe
r
Lee
M
erge
com
m
i
t
'remotes/ctb/xm
l
rpc_patches
'
into tryme
commit
|
commitdiff
|
tree
2009-09-10
Christopher
L
e
e
added order-by
pic
k
ling tes
t
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
added SQLTab
l
e
pickle tes
t
commit
|
commitdiff
|
tree
2009-09-10
Christ
o
pher Le
e
ad
d
ed test
s
w/o se
r
verSideC
u
rsors or bl
o
ck
I
terators
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
add
e
d serve
r
Sid
e
Cur
s
ors and blockIterators option
s
commit
|
commitdiff
|
tree
2009-09-10
Christopher Lee
e
xp
a
nded
r
andom value o
r
der b
y
t
e
st
commit
|
commitdiff
|
tree
2009-09-09
Christophe
r
Lee
Mer
g
e commit 'r
e
mo
t
es/mkszub
a
/s
q
lt
a
ble_orderby' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
Chris
t
opher
Lee
added SQLTable_Test
.
test_ord
e
rBy()
commit
|
commitdiff
|
tree
2009-09-09
Christopher L
e
e
updated
B
l
ockGe
n
erato
r
to work with g
e
neralize
d
o
r
d
erBy
.
.
.
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher Le
e
g
e
neralize B
l
ockGenera
t
or
to work with string key
s
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
fixed
s
mall
s
y
n
tax
e
r
r
or
commit
|
commitdiff
|
tree
2009-09-09
C
h
ristopher Lee
a
d
ded
CursorCl
o
ser
(
) mechanism
commit
|
commitdiff
|
tree
2009-09-09
Christoph
e
r
Lee
BlockGenera
t
or now working
commit
|
commitdiff
|
tree
2009-09-09
Christ
o
pher
Lee
fixe
s
to preve
n
t
u
nnecessar
y
invocat
i
on o
f
cmp()
commit
|
commitdiff
|
tree
2009-09-09
Ch
r
istophe
r
Lee
fixe
s
to
p
revent unnecess
a
ry
i
nvocati
o
n of iter()
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
more tests
f
or
u
nwanted it
e
rat
i
on
commit
|
commitdiff
|
tree
2009-09-09
Christopher L
e
e
basic
call for block generato
r
b
ase
d
iter
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
added test for unwante
d
ite
r
ation
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
f
i
r
s
t implementation of BlockGene
r
ato
r
iter
a
t
ion
m
echanism
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
make itervalues
/ iteritems use same or
d
e
rBy rules
commit
|
commitdiff
|
tree
2009-09-09
Christopher Lee
generalized iter_keys(), added orderBy
s
u
pp
o
rt
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
create
d
M
y
SQLS
e
rverInfo class that u
s
es SSCurs
o
r for
.
.
.
commit
|
commitdiff
|
tree
2009-09-08
Chri
s
toph
e
r Lee
ad
d
ed useSt
r
eaming option to mysql_
c
onnect()
commit
|
commitdiff
|
tree
2009-09-08
Christopher Lee
fixed new_
c
ur
s
or
(
) to propagate
a
rra
y
s
i
ze settin
g
p
r
operly
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
istopher Lee
a
d
de
d
test f
o
r bug 84
commit
|
commitdiff
|
tree
2009-09-05
C
h
rist
o
pher Lee
fixed bug 84
commit
|
commitdiff
|
tree
2009-09-05
Chri
s
t
o
pher
Lee
added
test for Gra
p
hView keys /
le
n
on
l
y re
f
lecting
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christ
o
phe
r
Lee
ad
d
ed inverse support for GraphView
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r
L
e
e
added test
for Graph
V
ie
w
inver
s
e and improved M
a
pView
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
m
a
k
e
GraphView
r
ai
s
e KeyError if key has no rows in
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
C
hristopher L
e
e
added
t
ests fo
r
MapView iterators and len
commit
|
commitdiff
|
tree
2009-09-05
C
hris
t
opher Le
e
avoid possible iter / keys infinite loop
commit
|
commitdiff
|
tree
2009-09-05
Christopher Le
e
added
l
ots of
t
est
s
for
gra
p
hs with nodes in
s
te
a
d of
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christophe
r
Lee
corrected
the SQLGr
a
ph it
e
ra
t
or methods and
impro
v
e
d
.
.
.
commit
|
commitdiff
|
tree
2009-09-05
Christopher Lee
testutil n
e
eded new na
m
e
of get_name_
c
ursor()
commit
|
commitdiff
|
tree
2009-09-05
Chr
i
stopher Le
e
ma
d
e get_n
a
me_cursor() use
DB
S
erverI
n
fo
commit
|
commitdiff
|
tree
2009-09-05
Ch
r
i
s
topher Lee
added iteration tes
t
t
o graph_te
s
t
.
py
commit
|
commitdiff
|
tree
2009-09-05
Christo
p
her Lee
use n
e
w iter_k
e
ys() method
commit
|
commitdiff
|
tree
2009-09-05
Christoph
e
r Lee
add
e
d b
e
tter ite
r
method
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
Merge commit 'remotes/
c
tb/xmlrpc_patches'
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher
Lee
Merge co
m
mit 'remotes/mks
z
uba/fi
n
k'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
remov
e
d
t
es
t
s/oldte
s
ts/nlmsa_dm
2
_
m
egatest
.
py
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge commit 'remotes/mk
s
zuba/docfixes'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
Merge co
m
m
i
t
'remotes/mks
z
uba/
c
lea
n
up'
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
her Lee
Merge commit 're
m
o
tes/mkszuba/bsddb_bsddb
3
'
commit
|
commitdiff
|
tree
2009-09-04
Christopher Le
e
corre
c
ted ClassicUnpickl
e
r
reference to p
o
i
nt
t
o cla
s
sutil
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
removed unused shelve im
p
ort
commit
|
commitdiff
|
tree
2009-09-04
C
h
risto
p
her Lee
r
e
moved
unused impo
r
t item
commit
|
commitdiff
|
tree
2009-09-04
C
h
ristopher Lee
M
e
rge
b
ranch 'tutorial'
commit
|
commitdiff
|
tree
2009-09-04
Christopher
L
ee
added argument to make MapV
i
e
w in
v
erse ab
l
e to
reconstitu
t
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
st
o
pher Lee
added t
e
st of
len() method for
SQLTable
commit
|
commitdiff
|
tree
2009-09-04
Christopher
Lee
a
d
ded db tutorial
(
mappin
g
) bac
k
to
gui
d
e
lis
t
table
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher Lee
ma
p
p
in
g
tuto
r
ial j
u
st cover
s
mappings, so r
e
m
o
v
ed ref
e
rence
.
.
.
commit
|
commitdiff
|
tree
2009-09-04
C
hristopher
Lee
added Ma
p
View in
v
e
r
se example to
tut
o
ria
l
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
ad
d
e
d
M
apView docs
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
opher L
e
e
add
e
d test for trapp
i
ng non-i
n
ver
t
ible
M
a
pView
commit
|
commitdiff
|
tree
2009-09-04
Chr
i
stopher Lee
add
e
d test
f
or
__invert__ method
to Ma
p
View
commit
|
commitdiff
|
tree
2009-09-04
Christop
h
er Lee
added _
_
inv
e
r
t
__ meth
o
d to MapView
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
a
d
ded material
on SQL
Ma
p
View
commit
|
commitdiff
|
tree
2009-09-04
Christoph
e
r
Le
e
a
d
d
e
d se
c
t
i
ons on mapping
to
d
is
k
/
wo
r
ldbase
commit
|
commitdiff
|
tree
2009-09-04
Christo
p
h
er Lee
changed title of xmlrpc tutorial
commit
|
commitdiff
|
tree
2009-09-04
Christopher Lee
minor
f
ix
e
s
t
o gene
tutori
a
l
commit
|
commitdiff
|
tree
2009-09-04
C
hristo
p
her Lee
moved material out o
f
world
b
ase
.
rst to worldba
s
e
2
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-04
Chris
t
o
pher Lee
separate tutor
i
al on saving
d
ata to worldbase
commit
|
commitdiff
|
tree
2009-09-04
C
h
r
istopher Lee
moved
schem
a
material to world
b
a
s
e2
.
rst tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christoph
e
r Lee
added wo
r
ld
b
ase security warning
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
more
revisions about downloading tutor
i
a
l
commit
|
commitdiff
|
tree
2009-09-03
C
h
ristopher Lee
revisi
o
n
s
to download=True sect
i
on
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
o
p
h
er Lee
added
d
e
pen
d
ency sec
t
ion in worldbase
.
rst tu
t
o
r
i
a
l
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
L
e
e
added world
b
ase
.
dir() tutorial
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
p
h
e
r
Lee
added in
t
ro section to worldba
s
e
.
rst
tutorial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher L
e
e
added Purp
o
se to ali
g
nme
n
t
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christophe
r
Lee
more little ch
a
nges to annotatio
n
2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
Christ
o
pher Lee
added Purpose
and
i
ntr
o
to annot
a
tions2
.
rst
commit
|
commitdiff
|
tree
2009-09-03
C
hri
s
topher Le
e
moved new basic tutorials to top of gu
i
de list
commit
|
commitdiff
|
tree
2009-09-03
Christop
h
er Lee
minor fix
t
o
db_basic
.
r
s
t
commit
|
commitdiff
|
tree
2009-09-03
C
hr
i
stop
h
er Lee
u
pdates
to reference/sqlgraph
.
r
st docs
commit
|
commitdiff
|
tree
2009-09-03
Chris
t
opher Lee
added S
Q
L saving sect
i
on
to db
t
utorial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
ist
o
pher Lee
b
a
sic database tutorial
commit
|
commitdiff
|
tree
2009-09-03
Ch
r
istopher Lee
adde
d
back __len__
(
) to
S
QLTableBase
.
H
o
w
in heck
.
.
.
commit
|
commitdiff
|
tree
2009-09-03
Christopher Lee
added sectio
n
on PrefixUnio
n
Dict
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
added section on plugging in your
o
wn sequence parser
commit
|
commitdiff
|
tree
2009-09-02
Chr
i
stop
h
e
r
Lee
moved old mat
e
ri
a
l ou
t
to compgenomi
c
s
.
rst
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
some min
o
r s
e
quence tutoria
l
revis
i
ons
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
istophe
r
Lee
added
t
utorial section
o
n access
i
ng seque
n
ce
data
b
as
e
.
.
.
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
pher Lee
spl
i
t up bullet
points
t
o integrate into the
c
ode
e
x
ample
commit
|
commitdiff
|
tree
2009-09-02
Christ
o
ph
e
r Lee
rev
i
s
ed sequence tuto
r
ial intro (first part)
commit
|
commitdiff
|
tree
2009-09-02
Christopher Lee
Merge commit 'remotes/
c
t
b/xmlrpc_tutorial
'
into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Christoph
e
r Lee
Mer
g
e commit 'remotes/ctb/
d
oc_alignm
e
nt
'
into tutorial
commit
|
commitdiff
|
tree
2009-09-02
Chris
t
o
p
her L
e
e
revised gff3 code
commit
|
commitdiff
|
tree
2009-09-02
C
h
r
i
stophe
r
L
e
e
added GFF3
e
x
ample
o
f gen
e
bui
l
di
n
g
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge
commit 'remotes/m
k
szuba/xmlrpc_
t
u
t
o
rial' into
.
.
.
commit
|
commitdiff
|
tree
2009-09-01
Christopher Lee
Merge commit 'remotes/ct
b
/
d
o
c_annotations'
into tutorial
commit
|
commitdiff
|
tree
2009-09-01
C
hristopher Lee
extracted m
a
t
erial for separate
d
atabas
e
tutoria
l
commit
|
commitdiff
|
tree
2009-08-29
Ch
r
i
s
top
h
er Lee
r
e
mov
e
d
u
nnecessary
s
tat and shutil import from
setup
.
py
commit
|
commitdiff
|
tree
2009-08-14
Christopher Le
e
f
ixed ea
s
y_install bug by prot
e
cting
c
oordinator
.
Resour
c
eFil
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
istopher Lee
fixed blast_test:
r
e
n
amed test_seq
_
without_db() to
.
.
.
commit
|
commitdiff
|
tree
2009-08-04
Ch
r
istopher Lee
Mer
g
e
c
om
m
it 'r
e
mote
s
/ctb/minor_fixes' into
m
inor_fixes
commit
|
commitdiff
|
tree
2009-08-04
Christopher Lee
fix por
t
pass
i
ng in t
e
stutil
.
TestXMLRPCServe
r
commit
|
commitdiff
|
tree
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