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Merge pull request #15 from solgenomics/topic/add_stock_file
2023-05-26
N
aama
M
enda
Me
r
ge pull req
u
e
s
t #1
4
from solgenom
i
c
s
/to
p
ic/update_annot
commit
|
commitdiff
|
tree
2022-07-11
N
a
ama Menda
fix fil
e
ex
t
e
n
tion cle
a
n
ing
commit
|
commitdiff
|
tree
2022-07-08
Naama M
e
n
d
a
add position to TomDel db
x
refs
commit
|
commitdiff
|
tree
2022-06-23
N
a
ama Menda
g
e
t file bas
e
name
commit
|
commitdiff
|
tree
2022-06-23
Naama
M
end
a
loader
for SGN
TomDel d
b
xrefs
commit
|
commitdiff
|
tree
2021-04-28
Naama M
e
nda
Merge branc
h
'm
a
ster
'
of https://
g
ithub
.
com
/
s
o
lgen
o
mics
.
.
.
commit
|
commitdiff
|
tree
2021-04-28
Naa
m
a Menda
clean phyloge
n
es
l
oader
error log
commit
|
commitdiff
|
tree
2020-01-22
Naama Menda
lo
a
d valencia p
h
otos
commit
|
commitdiff
|
tree
2018-09-21
Naama
M
e
n
d
a
Merge pull req
u
est #10
fr
o
m
s
olgeno
m
ics/topic
/
vari
t
ome_images
commit
|
commitdiff
|
tree
2018-09-19
Naama Menda
fi
x
alr
e
a
d
y upload
e
d
image lookup
commit
|
commitdiff
|
tree
2018-09-19
Naama M
e
nda
g
e
t th
e
correct tag
name
commit
|
commitdiff
|
tree
2018-09-19
Naa
m
a Menda
get
the correct stoc
k
nam
e
commit
|
commitdiff
|
tree
2018-09-19
Naama
Men
d
a
c
a
ll correct tag exists function
commit
|
commitdiff
|
tree
2018-09-19
N
a
ama Menda
u
pload the imag
e
when not in
te
s
t
mod
e
commit
|
commitdiff
|
tree
2017-04-14
Naam
a
Men
d
a
remove variable overloading
commit
|
commitdiff
|
tree
2017-03-03
Naam
a
Menda
parse plots corr
e
ctly
commit
|
commitdiff
|
tree
2017-02-02
Naama Men
d
a
i
n
cr
e
me
n
ting plot
n
umb
e
rs
by trial name
commit
|
commitdiff
|
tree
2017-01-30
Naama Menda
adjust pattern ma
t
ch for
repl
i
c
ate,
b
lock
,
pl
o
t num
b
ers
commit
|
commitdiff
|
tree
2017-01-25
N
a
a
ma Menda
p
a
rse
A
lp
h
a design tria
l
s
commit
|
commitdiff
|
tree
2017-01-23
Naa
m
a M
e
nda
fix
indent
for better readability
commit
|
commitdiff
|
tree
2017-01-23
Naama Menda
typ
o
s
commit
|
commitdiff
|
tree
2017-01-23
Naama Menda
make sure to fetch
o
n
l
y plots associ
a
ted with ph
e
notyping
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
Naama Men
d
a
tweak patt
e
r
n matc
h
ing
f
or b
l
ock and plot nu
m
bers
commit
|
commitdiff
|
tree
2016-02-09
Naama
M
enda
Merge p
u
ll request #7 from so
l
genomi
c
s/topic/sy
s
tem_
c
vter
m
s
commit
|
commitdiff
|
tree
2015-03-16
N
aam
a
Me
n
da
a
d
just C
I
A
T trials loa
d
er to upd
a
t
e
s
sent from Hernan
commit
|
commitdiff
|
tree
2015-02-27
Naama Menda
manually
load bulk locus curator
a
n
n
otations
commit
|
commitdiff
|
tree
2015-02-17
Naam
a
M
e
nd
a
loader for c
i
at cassava ph
e
notyping d
a
ta
commit
|
commitdiff
|
tree
2015-02-16
Na
a
m
a
M
e
nda
add new
c
iat pr
o
ject ty
p
es
commit
|
commitdiff
|
tree
2015-02-13
Naama Mend
a
make
sure p
r
oj
e
cts are n
o
t duplicated
commit
|
commitdiff
|
tree
2015-02-12
N
a
a
m
a Menda
load/find br
e
eding program , add nd_geolo
c
ation_id
.
.
.
commit
|
commitdiff
|
tree
2015-02-12
N
a
ama Men
d
a
m
odified
l
o
ader
f
o
r
CIAT trial
d
at
a
, tria
l
types,
g
eolocat
i
ons
commit
|
commitdiff
|
tree
2014-11-18
Naama M
e
nda
function for finding the feature objec
t
based on
the
.
.
.
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
t
y
po in P
O
D
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
typo
commit
|
commitdiff
|
tree
2014-07-15
Naama
M
end
a
loader for the peppe
r
genome gene models
V1
.
5
5
commit
|
commitdiff
|
tree
2014-06-13
Naama
Menda
remove version number fro
m
lo
c
us id f
o
r cr
e
ating links
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Naama Menda
correct
d
ocu
m
entation fo
r
storin
g
term
s
with
a months
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
N
a
ama Menda
fix documentation for loading s
n
p files
commit
|
commitdiff
|
tree
2013-06-25
Na
a
ma M
e
n
d
a
r
o
o
t te
r
m
for plan
t
_anatomy ha
s
chan
g
ed sinc
e
w
e la
s
t
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
N
aama
Menda
n
o
t a
good ide
a
t
o automatically upda
t
e obsolete terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naam
a
Men
d
a
updated code for fl
a
gging obsol
e
te an
n
otations, s
i
nce
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
N
aama
M
enda
pr
i
nt debugging info w
h
en
p
arents ar
e
store
d
commit
|
commitdiff
|
tree
2013-06-16
Naama
Menda
clea
n
ing clon
e
names in the loadi
n
g script
commit
|
commitdiff
|
tree
2013-06-09
Naa
m
a Menda
remove
leading and trailing spaces from all locus searhc
.
.
.
commit
|
commitdiff
|
tree
2013-04-13
N
aama Me
n
da
debug info about l
o
ading of plot st
o
ck
s
commit
|
commitdiff
|
tree
2013-04-13
Naam
a
M
enda
ad
d
p
r
ojec
t
name and year optio
n
s
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
snp load
e
r c
r
eates n
o
w new
s
t
ocks if not found in db
commit
|
commitdiff
|
tree
2013-04-12
N
a
ama Menda
add code from
m
erg
e
commit
|
commitdiff
|
tree
2013-04-12
Naama M
e
n
d
a
reso
l
v
e
d co
n
flict
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
support for
multil
o
cation fil
e
s
commit
|
commitdiff
|
tree
2013-04-07
N
a
ama
Menda
r
efin
i
ng clon
e
n
ame
search
commit
|
commitdiff
|
tree
2013-04-07
N
aama Mend
a
sk
i
pping
n
on-numeric values
commit
|
commitdiff
|
tree
2013-04-07
Naama Menda
chan
g
e surviving plants column header
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
loader b
a
sed on NRCRI dat
a
.
Should
w
ork
with
other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
N
a
ama Me
n
da
t
y
p
o
commit
|
commitdiff
|
tree
2013-04-06
Naa
m
a Menda
merged
c
hanges
commit
|
commitdiff
|
tree
2013-04-06
N
a
ama Menda
lo
a
der
for cassava
pro
j
e
c
ts and
t
he
i
r
me
t
adata
commit
|
commitdiff
|
tree
2013-03-30
Naam
a
Menda
l
oa
d
er for
c
a
ssava clon
e
s
and synony
m
s
commit
|
commitdiff
|
tree
2013-03-28
Naama Menda
refined
opt
i
o
ns for load
i
ng solcap
data
commit
|
commitdiff
|
tree
2012-11-29
Naama Me
n
da
print
shorter mini-ref
commit
|
commitdiff
|
tree
2012-11-29
N
a
am
a
Mend
a
reference_id i
n
locusgroup_member
is
a
dbxref
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
cxgn members
returns a data
s
t
ru
c
ture
w
i
t
h the locus
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Na
a
ma Menda
fun
c
tion
fo
r
r
eturning the s
e
cond
leve
l
object of loc
u
sgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
op
t
ion for passing l
o
c
usgroup_n
a
me
a
s an arg for
chec
k
ing
.
.
.
commit
|
commitdiff
|
tree
2012-11-05
Naama Men
d
a
tgrc wild
accessions
commit
|
commitdiff
|
tree
2012-11-05
N
a
ama
M
end
a
loa
d
er
fo
r
t
g
rc
w
ild acc
e
ssions
commit
|
commitdiff
|
tree
2012-11-04
Naama Menda
cassava and barley
l
oaders
commit
|
commitdiff
|
tree
2012-11-03
Naama
M
enda
Merge branch 'master' o
f
gi
t
hu
b
.
co
m
:solgenomics
/
Phenome
commit
|
commitdiff
|
tree
2012-11-03
Naa
m
a Mend
a
correct tab-delimited format
commit
|
commitdiff
|
tree
2012-10-31
Naama Mend
a
p
opula
t
io
n
s
h
o
u
ld be for mut
a
t
n
s
commit
|
commitdiff
|
tree
2012-10-31
Naama Menda
loader for
t
he
T
sukuba
mut
a
nts
commit
|
commitdiff
|
tree
2012-10-04
Naama Menda
tweak sc
a
l
e cvtermprop loa
d
ing script
commit
|
commitdiff
|
tree
2012-05-02
N
aama M
e
n
d
a
add updating of geno
m
e
l
o
cus identifier, description
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Naama Menda
add a user name option
commit
|
commitdiff
|
tree
2012-04-18
Naama
M
enda
typo
commit
|
commitdiff
|
tree
2012-04-18
Naama M
e
nda
a
dded a check
f
o
r st
o
ck_owner
r
ow
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corrected loa
d
er for cassava phenotyping
projects
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corrected loade
r
for cassa
v
a
phenotyping project
s
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
e
r
ror in fet
c
hing dbxref acc
e
s
sio
n
for
a pub
o
b
ject
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
modified ontology association s
c
ript to w
o
rk with sto
c
ks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naama Menda
updated dump scrip
t
.
Make this a cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
Naama Mend
a
removing
v
e
r
sion nu
m
bers
f
r
om Solyc g
e
ne ids
commit
|
commitdiff
|
tree
2012-01-09
N
a
ama
M
enda
moved the genotype
j
s
o
n to ge
n
o
t
yepprop
commit
|
commitdiff
|
tree
2012-01-06
Naama Menda
s
c
ript for reloading the solcap s
n
p positions as d
e
signated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Naam
a
Men
d
a
lo
a
der
for solcap Infinium
a
rray
snp
g
enotypes
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
fixed typos
commit
|
commitdiff
|
tree
2011-12-18
Naama
M
e
n
da
loader
f
o
r
the cassava
phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
silly typo
commit
|
commitdiff
|
tree
2011-12-16
N
aama
Menda
polishi
n
g script for ins
e
rting/updat
i
ng potato l
o
ci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
loader for t
h
e p
o
t
ato genome l
o
ci
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
printing
t
o a large se
q
uence file
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
f
i
xed
f
e
tc
h
ing
o
f Solyc mrna sequences
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
adding itag mrna sequences to loci bl
a
st
d
b
commit
|
commitdiff
|
tree
2011-11-23
Naama
M
e
nda
f
i
x
ed cvterm name for plot and member st
o
ck re
l
ati
o
n
s
hip
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naa
m
a Menda
capitalizing Quality term
commit
|
commitdiff
|
tree
2011-11-22
N
a
ama
M
enda
r
efining a
d
d_unigen
e
method
commit
|
commitdiff
|
tree
2011-11-16
N
a
ama Menda
Merge branch 'master' into top
i
c/lo
c
us_contro
l
ler
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
missing bind val
u
e
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
added locus
fi
e
l
d
to the search
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
adding disconnect for dbh without autoc
o
mmit
commit
|
commitdiff
|
tree
next