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script for reloading the solcap snp positions as designated in the V2.10 file
2012-01-06
Naama Mend
a
script for rel
o
adi
n
g the so
l
cap snp positi
o
ns a
s
designated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Naama Menda
l
o
a
der for
s
o
l
cap Infinium array snp genoty
p
es
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
f
i
x
e
d typ
o
s
commit
|
commitdiff
|
tree
2011-12-18
N
a
ama Me
n
da
loa
d
er for th
e
cassava p
h
enotypes
commit
|
commitdiff
|
tree
2011-12-17
Naa
m
a Menda
s
illy t
y
po
commit
|
commitdiff
|
tree
2011-12-16
Naama Menda
poli
s
hing script
for in
s
erting/updating pot
a
to loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Men
d
a
loader for the potato genome loci
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
printing to a large sequence file
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
fixed fetc
h
in
g
of
Solyc
mrna sequences
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
adding ita
g
mr
n
a sequence
s
to loc
i
blast db
commit
|
commitdiff
|
tree
2011-11-23
Naama M
e
nda
f
i
xed
c
vterm name for plot and member stock relationship
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
capit
a
liz
i
n
g Quali
t
y term
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
r
e
fining add_unigene m
e
tho
d
commit
|
commitdiff
|
tree
2011-11-16
Naama Mend
a
Merge branch 'master' into to
p
ic/loc
u
s_contro
l
ler
commit
|
commitdiff
|
tree
2011-11-16
N
a
ama Menda
missing bi
n
d value
commit
|
commitdiff
|
tree
2011-11-15
N
a
ama Me
n
da
a
d
ded loc
u
s
field to the sear
c
h
commit
|
commitdiff
|
tree
2011-11-15
Naama M
e
n
da
a
d
ding disconnect for d
b
h wit
h
o
u
t auto
c
ommit
commit
|
commitdiff
|
tree
2011-11-08
Naama Menda
updat
e
D
B
I
x::Class phenome
s
chema classe
s
commit
|
commitdiff
|
tree
2011-11-07
N
aama Me
n
da
Merge branch 'master' i
n
to topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-07
Na
a
ma M
e
nda
re
s
olved con
f
lict
commit
|
commitdiff
|
tree
2011-11-07
Naama M
e
nda
added accessor
s
for geno
m
e_locus name
f
ie
l
d
commit
|
commitdiff
|
tree
2011-11-09
Naama Men
d
a
disabling autocommit
commit
|
commitdiff
|
tree
2011-11-07
Naama M
e
nda
patch for a
d
ding a
locus field to the locus
t
able
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama
M
enda
adding phenotype p
r
ops
to
solcap phe
n
otyp
e
s
commit
|
commitdiff
|
tree
2011-10-30
Na
a
ma Menda
using dbc->dbh instead of C
X
GM::DB::C
o
nnection
commit
|
commitdiff
|
tree
2011-10-15
Naama M
e
nda
o
bsoleting loc
u
s alias if the ITAG id
i
s
just the alias
commit
|
commitdiff
|
tree
2011-10-15
Naama
M
enda
script
f
o
r
obsoleting ITAG loci
fro
m
phenome
.
l
ocus
commit
|
commitdiff
|
tree
2011-10-15
Naama
Men
d
a
removing trailing spaces f
r
om unit name
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
removing tr
a
iling spa
c
esfromun
i
t
name
commit
|
commitdiff
|
tree
2011-10-14
N
a
ama Menda
f
ixin
g
b
u
g in merge_loc
u
s fun
c
tion wh
e
n
merged lo
c
us
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
m
aking sure pla
n
t hait terms are
fou
n
d
commit
|
commitdiff
|
tree
2011-10-12
Naama
Menda
l
o
o
king at d
i
rec
t
child terms for
qualitati
v
e terms
commit
|
commitdiff
|
tree
2011-10-11
N
a
ama Menda
loading qualitative terms
correctly
commit
|
commitdiff
|
tree
2011-10-11
N
a
ama Menda
adding unit
o
n
tology cvterms to the
p
henotyeps
commit
|
commitdiff
|
tree
2011-10-03
Naama M
e
nda
jus
t
warning if parent stock is n
o
t found
commit
|
commitdiff
|
tree
2011-10-03
Naama
Me
n
d
a
t
y
po
commit
|
commitdiff
|
tree
2011-10-03
Naam
a
Me
n
da
parsing more options for solca
p
i
m
age files
commit
|
commitdiff
|
tree
2011-10-02
N
a
ama Menda
f
i
n
d the yea
r
of the proect from the me
t
a
d
a
t
a file
commit
|
commitdiff
|
tree
2011-10-02
Naama
M
enda
yea
r
s
hou
l
d be a property of the
project
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
searcg is b
e
tt
e
r than
f
ind here
commit
|
commitdiff
|
tree
2011-09-27
Naama
M
e
n
da
typo
commit
|
commitdiff
|
tree
2011-09-27
Na
a
ma Men
d
a
skipping
f
or non-e
x
ist
i
ng plots
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama
M
enda
c
hecking correctly if an image i
s
loaded and if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
Naam
a
Menda
better pr
i
nting of er
r
or messag
e
s
commit
|
commitdiff
|
tree
2011-09-27
Naama Men
d
a
added a check for ex
i
sting stock-ima
g
e l
i
nks
commit
|
commitdiff
|
tree
2011-09-23
Naama M
e
n
d
a
last typo?
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-23
Naa
m
a Menda
typo
commit
|
commitdiff
|
tree
2011-09-23
Naama Me
n
da
added excepti
o
n fo
r
planting date
p
roperty
commit
|
commitdiff
|
tree
2011-09-23
N
a
ama Men
d
a
ad
d
ed year option for finding
u
nique plot na
m
es
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
setti
n
g
the transaction pr
o
perly
commit
|
commitdiff
|
tree
2011-09-18
Naama Me
n
da
checking if a
s
ynonym value was already loaded
commit
|
commitdiff
|
tree
2011-09-17
Naama Menda
loader for
s
o
lcap images
commit
|
commitdiff
|
tree
2011-09-17
Naama Mend
a
using tx
n
_do
f
or
the transa
c
t
ion
commit
|
commitdiff
|
tree
2011-09-16
Naama
M
enda
modifi
e
d
o
ptions
fo
r
loading solca
p
TA
data
commit
|
commitdiff
|
tree
2011-09-16
Naama Mend
a
a
dded parsing of qualitati
v
e tra
i
ts into the tom
a
to
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama
M
enda
f
i
xed loading st
o
c
k
owne
r
into the
r
ight place
commit
|
commitdiff
|
tree
2011-09-14
Na
a
ma
Menda
no need
to clone th
e
dbh
commit
|
commitdiff
|
tree
2011-09-14
Naama
M
enda
added miss
i
ng phen
o
me
DBIC classes
commit
|
commitdiff
|
tree
2011-09-14
Na
a
ma Menda
using CXGN
:
:
P
henome::S
c
hema for checking/inserting
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
removed ou
t
date
d
l
oading
s
c
r
ipt
commit
|
commitdiff
|
tree
2011-09-14
N
a
ama Menda
u
p
dated script for
l
o
a
ding solca
p
accessio
n
s
commit
|
commitdiff
|
tree
2011-09-14
Naama Men
d
a
updated CXGN::Phenome
:
:S
c
h
ema classes
commit
|
commitdiff
|
tree
2011-09-13
Naama Men
d
a
typo
commit
|
commitdiff
|
tree
2011-09-04
Na
a
ma Menda
loading script for SolCAP po
t
ato
images
commit
|
commitdiff
|
tree
2011-09-02
Naama Menda
l
o
der for i
m
ages from Sandy Knap
p
commit
|
commitdiff
|
tree
2011-08-31
N
a
ama
M
enda
ad
d
i
n
g date
p
r
op to ex
p
er
i
m
e
n
ts
commit
|
commitdiff
|
tree
2011-08-28
Naama Menda
load
i
ng
sc
r
i
p
t for potato solcap data
.
H
opef
u
lly
ne
x
t
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama Menda
l
o
ad
e
r
for T
A
I
R
loci
commit
|
commitdiff
|
tree
2011-06-19
Naama
Menda
updated s
o
lcap stuff for re
l
oadi
n
g the potato 2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
N
a
ama
M
e
nda
patch for
changes in Chado ND sche
m
a
commit
|
commitdiff
|
tree
2011-04-22
Naama
Menda
d
b
patch for g
r
a
n
ting
delete on
m
etadata
t
o web_usr
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
N
aama Me
n
da
updated D
B
I
x c
l
a
s
ses
,
n
o more phenome
.
p
h
enotype table
commit
|
commitdiff
|
tree
2011-04-18
Naama Me
n
da
skipping m
e
tadata
ins
e
r
t
if
o
n
e of
t
h
e
FK
s
i
s
null
commit
|
commitdiff
|
tree
2011-04-17
Naama Menda
adding web_usr permiss
i
ons to metadata
table
commit
|
commitdiff
|
tree
2011-04-17
Naa
m
a Menda
t
y
po i
n
query
commit
|
commitdiff
|
tree
2011-04-17
Naama M
e
nda
forg
o
t to ad
d
web_us
r
permission
s
commit
|
commitdiff
|
tree
2011-04-17
N
a
a
ma Men
d
a
using stock_allele a
n
d stock_image instead of stock
p
rop
commit
|
commitdiff
|
tree
2011-04-16
N
a
ama
M
e
n
d
a
db patch for migrating stock
image,
a
l
l
ele,
and
owner
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
re
f
actoring functions that use i
n
di
v
iduals
.
N
o
w
we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
N
a
ama Me
n
d
a
typos
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
enda
deleting first existi
n
g allel
e
lin
k
s
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
enda
db
p
atch
f
o
r correctly storing al
l
alleles linked
with
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
selecti
n
g
a
l
l al
l
eles, including de
f
aults
o
n
e
s
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
removed sea
r
ching loci by stock phenot
y
pes
.
To
do this
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naa
m
a
Menda
ad
d
e
d
a
n option to pas
s
t
h
e image
_
path
.
this let
s
r
u
n
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
N
aama Men
d
a
forgot to allow
duplicate
v
a
lues
.
Withou
t
th
i
s multiple
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Me
n
da
p
o
l
i
shed loading s
c
ript
for lycotil
l
images
commit
|
commitdiff
|
tree
2011-03-28
Naam
a
Menda
l
o
ading scri
p
t
for
lycotill acc
e
ssio
n
s
commit
|
commitdiff
|
tree
2011-03-23
N
aama Menda
dbpatch for fixing locus_
m
arker FK
commit
|
commitdiff
|
tree
2011-03-22
Naama Menda
adde
d
a
n in
t
erim function for getting
population object
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
N
a
ama Menda
db patch for m
o
ving
stock annotations
from
s
t
ock_dbxref
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Naama Mend
a
ad
d
ed missing dependency t
o
db pa
t
h
c
commit
|
commitdiff
|
tree
2011-03-09
Na
a
ma
M
enda
silly typo i
n
db
p
atch
commit
|
commitdiff
|
tree
2011-03-09
Naama Menda
db
p
atch for th
e
m
i
ssing link to
s
t
o
ck_id
f
rom the
.
.
.
commit
|
commitdiff
|
tree
2011-03-04
N
aama Menda
s
i
ll
y
typo
commit
|
commitdiff
|
tree
2011-03-03
Naama
Menda
fixed loading experime
n
t
ids for each
stock phenot
y
p
ed
commit
|
commitdiff
|
tree
2011-02-07
Naama Me
n
da
db path for adding undef optio
n
t
o allele m
o
de_of_inheritanc
.
.
.
commit
|
commitdiff
|
tree
2010-12-08
Naama Mend
a
filte
r
ing obsolete loci and non
-
cu
r
r
ent uni
g
e
n
es
commit
|
commitdiff
|
tree
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