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silly typo
2011-12-17
Naama
M
enda
silly typo
commit
|
commitdiff
|
tree
2011-12-16
Na
a
ma Menda
p
o
l
ishing script for
i
nserting/updating potat
o
l
oci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Men
d
a
loader for t
h
e
pot
a
to genome l
o
ci
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
print
i
ng to a larg
e
seq
u
ence file
commit
|
commitdiff
|
tree
2011-12-14
N
aama Menda
fixed fetc
h
ing of Sol
y
c
mrna
s
equences
commit
|
commitdiff
|
tree
2011-12-14
N
a
a
ma Menda
adding it
a
g mrna
s
e
quence
s
t
o
lo
c
i
blast
db
commit
|
commitdiff
|
tree
2011-11-23
Naama Menda
fi
x
ed
cvt
e
rm name for plot and m
e
mbe
r
stock rela
t
ions
h
i
p
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
N
a
ama
M
enda
c
apitalizing
Q
ual
i
ty ter
m
commit
|
commitdiff
|
tree
2011-11-22
N
a
a
ma Menda
refining
a
dd_unige
n
e
method
commit
|
commitdiff
|
tree
2011-11-16
N
a
am
a
Menda
Merge branch 'master' into topic/locus_c
o
nt
r
oller
commit
|
commitdiff
|
tree
2011-11-16
Naama M
e
nda
missing bind value
commit
|
commitdiff
|
tree
2011-11-15
Naama
Menda
a
d
d
e
d
locus
f
iel
d
t
o the sear
c
h
commit
|
commitdiff
|
tree
2011-11-15
N
aama Menda
adding disconne
c
t fo
r
d
bh wi
t
hout autocommit
commit
|
commitdiff
|
tree
2011-11-08
Naama M
e
nda
update
DBI
x
::Clas
s
phenome schema
classes
commit
|
commitdiff
|
tree
2011-11-07
Naama M
e
nda
M
e
r
ge b
r
an
c
h 'master'
i
nto t
o
pic/locus_c
o
ntroller
commit
|
commitdiff
|
tree
2011-11-07
N
aama
M
enda
resolve
d
confl
i
c
t
commit
|
commitdiff
|
tree
2011-11-07
Naam
a
Menda
added
a
ccessors for g
e
nom
e
_
locus name field
commit
|
commitdiff
|
tree
2011-11-09
Naama Menda
d
is
a
bl
i
ng autocommit
commit
|
commitdiff
|
tree
2011-11-07
Naama
Menda
pat
c
h for adding a locus field to the locus table
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Menda
adding
p
h
enotype props to solcap phenotypes
commit
|
commitdiff
|
tree
2011-10-30
N
aama
M
enda
using dbc->dbh instead of CXGM
:
:DB::Conne
c
tion
commit
|
commitdiff
|
tree
2011-10-15
N
aama Menda
obsoleting
locus alias if
t
he ITAG id is just the alias
commit
|
commitdiff
|
tree
2011-10-15
Naama Me
n
da
script for obsoleting ITA
G
loci fr
o
m phenome
.
locu
s
commit
|
commitdiff
|
tree
2011-10-15
Naama Mend
a
remov
i
ng trailing spaces from unit name
commit
|
commitdiff
|
tree
2011-10-15
N
aama Menda
removing tra
i
ling spacesfromunit name
commit
|
commitdiff
|
tree
2011-10-14
Naama Menda
fixi
n
g bug in
m
erge_locus fu
n
c
t
ion
when me
r
ged locus
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama
M
e
n
da
mak
i
ng sure plan
t
hait terms
a
r
e found
commit
|
commitdiff
|
tree
2011-10-12
N
a
ama M
e
nda
looking at d
i
rect
c
hild te
r
ms for
quali
t
a
t
i
v
e
te
r
ms
commit
|
commitdiff
|
tree
2011-10-11
Naama
M
e
nda
load
i
ng q
u
a
litativ
e
terms correctly
commit
|
commitdiff
|
tree
2011-10-11
N
a
ama Men
d
a
adding uni
t
o
ntology cvter
m
s to th
e
phe
n
ot
y
e
ps
commit
|
commitdiff
|
tree
2011-10-03
Naam
a
M
en
d
a
j
u
st wa
r
ning i
f
pare
n
t
s
tock is not found
commit
|
commitdiff
|
tree
2011-10-03
Naama M
e
nd
a
typo
commit
|
commitdiff
|
tree
2011-10-03
Naama Men
d
a
parsing more options fo
r
solcap image files
commit
|
commitdiff
|
tree
2011-10-02
Naama
Menda
find the year of the p
r
oect fro
m
the metadata fi
l
e
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
year should be a
prop
e
rt
y
of the pr
o
ject
commit
|
commitdiff
|
tree
2011-10-02
Naam
a
Menda
searcg i
s
bett
e
r than find here
commit
|
commitdiff
|
tree
2011-09-27
Naam
a
Menda
t
y
p
o
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
skipping for
non-
e
xisting
plots
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
c
h
ecking
correctly if an
i
m
age is loaded an
d
if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama
M
enda
b
e
t
t
er
p
rinting of
e
rror
m
essages
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama Menda
ad
d
e
d
a check for exi
s
t
ing s
t
o
c
k-image links
commit
|
commitdiff
|
tree
2011-09-23
Naama M
e
nda
l
a
s
t
typo?
commit
|
commitdiff
|
tree
2011-09-23
Naam
a
Menda
t
ypo
commit
|
commitdiff
|
tree
2011-09-23
N
aam
a
Menda
typ
o
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
added exceptio
n
f
o
r pla
n
ting dat
e
prop
e
rty
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
added
y
ea
r
o
p
tion for findi
n
g un
i
q
u
e plot
names
commit
|
commitdiff
|
tree
2011-09-18
Naama M
e
nda
setting the transaction proper
l
y
commit
|
commitdiff
|
tree
2011-09-18
N
a
ama Menda
checking if a synon
y
m va
l
ue was already load
e
d
commit
|
commitdiff
|
tree
2011-09-17
N
aama Menda
loade
r
for
solcap images
commit
|
commitdiff
|
tree
2011-09-17
Naama M
e
nd
a
using txn_do fo
r
the transaction
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
modified
o
ptions for loading solcap
TA
d
ata
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
added parsi
n
g of q
u
alitative tr
a
its into the tomat
o
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
N
aa
m
a Menda
fi
x
ed l
o
ad
i
ng sto
c
k owner into the right place
commit
|
commitdiff
|
tree
2011-09-14
Naama Men
d
a
n
o need to c
l
one the dbh
commit
|
commitdiff
|
tree
2011-09-14
Naam
a
Menda
added missi
n
g
phen
o
me
DBI
C
c
l
asses
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
using CXGN::Phenome::Sche
m
a for
c
hec
k
ing
/
insert
i
n
g
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Na
a
m
a
Me
n
d
a
r
e
moved o
u
tdated load
i
ng scri
p
t
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
updat
e
d script for
loading solc
a
p accessions
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
up
d
ated
CXG
N
::Phe
n
ome::Schema classes
commit
|
commitdiff
|
tree
2011-09-13
Na
a
ma Menda
typo
commit
|
commitdiff
|
tree
2011-09-04
Naama Menda
loading script for SolCA
P
potato images
commit
|
commitdiff
|
tree
2011-09-02
Naama Men
d
a
loder for images fr
o
m Sandy
K
napp
commit
|
commitdiff
|
tree
2011-08-31
Naama Menda
addi
n
g date
prop to e
x
p
eriments
commit
|
commitdiff
|
tree
2011-08-28
N
a
a
ma Menda
loading script for potato
solcap data
.
Hope
f
ully next
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama Menda
loader for TAI
R
loci
commit
|
commitdiff
|
tree
2011-06-19
Naa
m
a Menda
updated solcap
s
tuff for
reloading the p
o
t
a
t
o 2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
Naa
m
a Menda
pa
t
ch for change
s
in
C
hado ND sc
h
em
a
commit
|
commitdiff
|
tree
2011-04-22
Naa
m
a M
e
n
da
db patch for
g
ranting delete on m
e
tadata to web_usr
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Naama Me
n
d
a
updated DBIx cl
a
sses ,
n
o m
o
r
e
ph
e
nome
.
p
henotype table
commit
|
commitdiff
|
tree
2011-04-18
N
aama Menda
ski
p
ping metadata insert if one of the
F
K
s
is n
u
ll
commit
|
commitdiff
|
tree
2011-04-17
Naa
m
a Menda
addin
g
web_u
s
r p
e
rmissions
t
o metadata t
a
bl
e
commit
|
commitdiff
|
tree
2011-04-17
Naama
Menda
typo in query
commit
|
commitdiff
|
tree
2011-04-17
Naama Mend
a
f
o
rgot to ad
d
we
b
_
u
s
r p
e
r
mi
s
sions
commit
|
commitdiff
|
tree
2011-04-17
Naama M
e
nda
using stock_alle
l
e an
d
st
o
c
k_image
instead o
f
st
o
ckprop
commit
|
commitdiff
|
tree
2011-04-16
Naama M
e
nd
a
d
b
patch for migrating stock image, allele,
a
nd owner
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
r
efa
c
toring functions that use individua
l
s
.
Now we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
N
a
a
m
a
M
e
n
da
typos
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
deleting first
existing all
e
le links
commit
|
commitdiff
|
tree
2011-04-01
Naama M
e
n
d
a
db patch for correct
l
y storing all allele
s
linked wi
t
h
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Men
d
a
selecting all alleles
,
including
d
efaults
o
n
e
s
commit
|
commitdiff
|
tree
2011-04-01
Naama
Menda
removed
se
a
rchin
g
loci
by stock phenotypes
.
To do this
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
a
d
d
e
d an optio
n
t
o pa
s
s the image_pat
h
.
this l
e
ts r
u
n
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
Naama M
e
nda
forgot to a
l
l
ow
d
uplicat
e
values
.
Wi
t
h
o
ut
th
i
s mult
i
p
le
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
N
a
a
m
a Menda
polished
l
oading script for lycotill
i
mages
commit
|
commitdiff
|
tree
2011-03-28
Naama Men
d
a
loading script
f
o
r
l
y
cotill access
i
o
n
s
commit
|
commitdiff
|
tree
2011-03-23
Naa
m
a
Menda
dbpatch for
f
ixing
locus_mar
k
er
FK
commit
|
commitdiff
|
tree
2011-03-22
Naama Menda
adde
d
an interim
funct
i
o
n for ge
t
ting population object
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
Naama Men
d
a
db patch for moving
s
t
o
c
k
annot
a
tions from stock_dbxref
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Naama Menda
added missi
n
g depen
d
e
n
cy t
o
d
b pathc
commit
|
commitdiff
|
tree
2011-03-09
Naama Menda
s
i
lly t
y
po in dbpatch
commit
|
commitdiff
|
tree
2011-03-09
Naama Menda
db patch for the mis
s
ing lin
k
to
s
tock_id from the
.
.
.
commit
|
commitdiff
|
tree
2011-03-04
Naama Menda
sil
l
y typo
commit
|
commitdiff
|
tree
2011-03-03
N
aama Menda
fixed loading experime
n
t ids
for e
a
ch sto
c
k
p
h
enotype
d
commit
|
commitdiff
|
tree
2011-02-07
Na
a
ma
Menda
db path for addin
g
undef optio
n
to allele mode_of_inherita
n
c
.
.
.
commit
|
commitdiff
|
tree
2010-12-08
Naama Menda
filtering
o
bsolete
l
o
c
i
and non-cur
r
ent unige
n
es
commit
|
commitdiff
|
tree
2010-12-01
Naama Menda
patch f
o
r
u
pd
a
ting the
u
n
ique cons
t
r
aint on nd_
e
x
p
eriment_ph
.
.
.
commit
|
commitdiff
|
tree
2010-11-24
Naa
m
a
Menda
updating
chr
o
mosome
n
umber
f
or loci
w
it
h
itag m
a
tches
commit
|
commitdiff
|
tree
2010-11-24
N
a
ama Menda
fixed typo
s
in db patch
commit
|
commitdiff
|
tree
2010-11-24
Naa
m
a
Menda
setting itag synonym preferr
e
d
=f
commit
|
commitdiff
|
tree
next