repo.or.cz
/
phenome.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
modified loader for CIAT trial data, trial types, geolocations
2015-02-12
Naama
Menda
modified loader for CIAT
t
r
ial data, trial types,
g
e
olo
c
ations
commit
|
commitdiff
|
tree
2014-07-15
Naa
m
a M
e
n
d
a
typo
i
n PO
D
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
typo
commit
|
commitdiff
|
tree
2014-07-15
Naama
M
e
n
da
l
o
ader for the
pepper g
e
n
o
me gene
m
odels V1
.
55
commit
|
commitdiff
|
tree
2014-06-13
Naama Mend
a
remove version num
b
er from locus id
for creati
n
g
l
i
nks
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Naama Menda
corr
e
c
t
documen
t
ation for storing terms with a
m
o
nth
s
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
Naama Menda
fi
x
documentation for loa
d
ing snp files
commit
|
commitdiff
|
tree
2013-06-25
Naama
M
enda
root term for
plan
t
_anatomy has changed since
w
e las
t
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Na
a
ma Mend
a
n
o
t
a good idea to automatically u
p
date obsolete terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naam
a
Me
n
da
updated code for
flagging obsolete
a
n
n
o
t
at
i
ons, since
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naa
m
a
M
enda
print debu
g
ging info when parents are s
t
ored
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
c
leaning
c
lone
names in the
l
oading
script
commit
|
commitdiff
|
tree
2013-06-09
N
aama
M
enda
re
m
ove
l
e
a
ding and t
r
ail
i
ng sp
a
c
e
s from all locus searh
c
.
.
.
commit
|
commitdiff
|
tree
2013-04-13
Naama Mend
a
de
b
ug info about l
o
ading
o
f
p
l
ot stock
s
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
add
p
roject nam
e
and year options
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
snp loader
c
rea
t
es now new stocks if not foun
d
in db
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
a
d
d
c
od
e
from
merge
commit
|
commitdiff
|
tree
2013-04-12
N
a
a
m
a
M
enda
resolved conflict
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
supp
o
rt for multilocat
i
on
f
iles
commit
|
commitdiff
|
tree
2013-04-07
Naama Menda
refi
n
ing cl
o
ne
name se
a
r
c
h
commit
|
commitdiff
|
tree
2013-04-07
Naama
M
e
nda
ski
p
ping non-numer
i
c
values
commit
|
commitdiff
|
tree
2013-04-07
N
aa
m
a
Menda
c
ha
n
ge s
u
rviving plant
s
column he
a
der
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
loader
b
ased on NRCRI dat
a
.
Should
work w
i
th
other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
typo
commit
|
commitdiff
|
tree
2013-04-06
Naa
m
a
Menda
merged
changes
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
lo
a
der for c
a
ss
a
va pro
j
ects and t
h
e
ir metad
a
ta
commit
|
commitdiff
|
tree
2013-03-30
Naa
m
a
M
en
d
a
l
oader for
c
assava clones and sy
n
o
n
yms
commit
|
commitdiff
|
tree
2013-03-28
Naama Menda
refi
n
ed
option
s
fo
r
loading solcap data
commit
|
commitdiff
|
tree
2012-11-29
Naa
m
a Mend
a
print sho
r
ter mi
n
i-ref
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
refe
r
ence_id in locusg
r
oup_member is a dbxref
commit
|
commitdiff
|
tree
2012-11-28
Naama Mend
a
cxgn membe
r
s returns a da
t
a structure
w
i
th the locus
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
f
u
nction for returning the s
e
con
d
le
v
el objec
t
of locusgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naam
a
Mend
a
op
t
ion for pas
s
i
n
g locusgroup
_
n
ame as
an a
r
g for ch
e
ckin
g
.
.
.
commit
|
commitdiff
|
tree
2012-11-05
Naama Menda
tgrc wild access
i
ons
commit
|
commitdiff
|
tree
2012-11-05
Naama Menda
loade
r
for tgrc
wild a
c
c
essio
n
s
commit
|
commitdiff
|
tree
2012-11-04
Naa
m
a
Menda
cassava and barley loaders
commit
|
commitdiff
|
tree
2012-11-03
N
a
a
m
a Mend
a
Merge branch 'master' of gith
u
b
.
com:solge
n
o
m
ic
s
/Phenome
commit
|
commitdiff
|
tree
2012-11-03
N
a
ama Me
n
da
c
o
rrect tab-deli
m
ite
d
format
commit
|
commitdiff
|
tree
2012-10-31
Naama Menda
p
o
pulati
o
n should
b
e
for mu
t
a
t
n
s
commit
|
commitdiff
|
tree
2012-10-31
Naama Menda
l
o
a
der for the Tsukub
a
m
utants
commit
|
commitdiff
|
tree
2012-10-04
N
a
ama Menda
tweak scale cvtermpro
p
loading script
commit
|
commitdiff
|
tree
2012-05-02
Naama M
e
nda
add updati
n
g of genome locus identifier,
d
escription
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Naama Me
n
da
add a user
name o
p
t
i
o
n
commit
|
commitdiff
|
tree
2012-04-18
N
aa
m
a Menda
t
ypo
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
added a che
c
k fo
r
s
t
o
c
k
_ow
n
er
row
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corrected loader
f
o
r cassava phenotyping projects
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corr
e
cted load
e
r
for cassava phenotyping
p
r
oj
e
cts
commit
|
commitdiff
|
tree
2012-03-15
Naama
M
enda
error in fetching dbxref
a
c
c
e
ssion for a pub object
commit
|
commitdiff
|
tree
2012-03-15
Naama M
e
nda
m
o
dified o
n
tology associatio
n
script to work with stock
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
N
a
ama Menda
updated dump script
.
Make this a cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
Naa
m
a Me
n
da
removin
g
vers
i
on numbe
r
s from Solyc gene ids
commit
|
commitdiff
|
tree
2012-01-09
Naama Men
d
a
moved the genotype json to genotyepp
r
op
commit
|
commitdiff
|
tree
2012-01-06
Naama
M
en
d
a
script for reloading t
h
e
solcap s
n
p pos
i
tions as designated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
N
aama Menda
loader for solcap
Infinium array
snp genoty
p
es
commit
|
commitdiff
|
tree
2011-12-20
Naam
a
Menda
f
ix
e
d typos
commit
|
commitdiff
|
tree
2011-12-18
Naama Menda
loade
r
for
t
h
e c
a
ssava phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama M
e
n
d
a
silly typo
commit
|
commitdiff
|
tree
2011-12-16
Na
a
ma Menda
polishin
g
scri
p
t for insert
i
ng/updati
n
g
potato
l
o
c
i
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
N
a
ama Men
d
a
lo
a
der for the potato genome
l
o
ci
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
printing to a large
s
eque
n
ce file
commit
|
commitdiff
|
tree
2011-12-14
Naama
Menda
fix
e
d fetch
i
ng of Soly
c
mrna sequences
commit
|
commitdiff
|
tree
2011-12-14
Naama Mend
a
a
d
ding ita
g
mr
n
a sequences to l
o
ci blast db
commit
|
commitdiff
|
tree
2011-11-23
N
a
ama Menda
fixed cvterm name f
o
r plot and
member stock relation
s
hip
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naa
m
a Men
d
a
capitalizing Quality te
r
m
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
refining a
d
d_unige
n
e
m
e
t
hod
commit
|
commitdiff
|
tree
2011-11-16
Naama
M
e
n
da
Merge bra
n
ch 'master' into topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
missin
g
bind value
commit
|
commitdiff
|
tree
2011-11-15
Na
a
m
a Menda
added locus field
to
t
he search
commit
|
commitdiff
|
tree
2011-11-15
N
a
ama Menda
adding dis
c
onnect fo
r
dbh without au
t
ocommit
commit
|
commitdiff
|
tree
2011-11-08
Naam
a
Menda
update DBIx::Cla
s
s phen
o
me sch
e
ma
c
l
asses
commit
|
commitdiff
|
tree
2011-11-07
Na
a
ma M
e
nda
M
erge
br
a
nch 'maste
r
' int
o
t
o
pic/locus_con
t
roller
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
resolved co
n
fl
i
ct
commit
|
commitdiff
|
tree
2011-11-07
Naam
a
Menda
a
dded
a
c
c
es
s
o
r
s for
g
enome_locus name field
commit
|
commitdiff
|
tree
2011-11-09
Naam
a
M
enda
disa
b
ling
a
uto
c
om
m
i
t
commit
|
commitdiff
|
tree
2011-11-07
Naama Men
d
a
patch fo
r
addi
n
g
a l
o
cus fiel
d
to the locus table
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama
Menda
a
d
ding phenotyp
e
props to solcap ph
e
n
o
types
commit
|
commitdiff
|
tree
2011-10-30
N
a
ama
M
enda
using dbc->dbh instead of CXGM::
D
B::Connecti
o
n
commit
|
commitdiff
|
tree
2011-10-15
N
aama Menda
ob
s
oleti
n
g
locus
a
lia
s
i
f
the ITAG id is ju
s
t the
a
lias
commit
|
commitdiff
|
tree
2011-10-15
Naama
M
e
n
d
a
script for obsoleting ITAG loci from phenom
e
.
loc
u
s
commit
|
commitdiff
|
tree
2011-10-15
N
a
ama Menda
remo
v
in
g
trail
i
ng
spa
c
es
f
rom unit
n
ame
commit
|
commitdiff
|
tree
2011-10-15
Naa
m
a
Menda
removing tra
i
ling spaces
f
romunit name
commit
|
commitdiff
|
tree
2011-10-14
Naam
a
Menda
f
ix
i
n
g
bug
i
n merge_locus functi
o
n when merged locus
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
makin
g
sure pla
n
t hait term
s
are f
o
und
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
looking
at
d
i
rect
ch
i
ld terms
f
or qualitative terms
commit
|
commitdiff
|
tree
2011-10-11
Naama Mend
a
load
i
ng qualitative terms correct
l
y
commit
|
commitdiff
|
tree
2011-10-11
Naama Menda
adding unit o
n
tology cvterms to the p
h
enotye
p
s
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
jus
t
war
n
in
g
if
parent stock is not
f
ound
commit
|
commitdiff
|
tree
2011-10-03
Naama Mend
a
typ
o
commit
|
commitdiff
|
tree
2011-10-03
Na
a
ma Menda
p
arsing more opt
i
ons f
o
r solcap ima
g
e files
commit
|
commitdiff
|
tree
2011-10-02
N
a
a
m
a M
e
nda
find th
e
year of the
p
roect fr
o
m the metadata file
commit
|
commitdiff
|
tree
2011-10-02
Naama
Menda
ye
a
r
should be a
property of the project
commit
|
commitdiff
|
tree
2011-10-02
Naam
a
M
e
n
d
a
searcg is better than find here
commit
|
commitdiff
|
tree
2011-09-27
Naama
Men
d
a
typo
commit
|
commitdiff
|
tree
2011-09-27
Naam
a
M
e
nda
skipping
f
o
r
non-existing plots
commit
|
commitdiff
|
tree
2011-09-27
Naama M
e
n
da
c
h
e
c
king correctly
if
a
n image is l
o
aded and if w
a
s
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
N
aama Menda
better pr
i
n
ting of error messages
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
added a
check fo
r
existing stock
-
i
mage
l
ink
s
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
l
a
s
t typo
?
commit
|
commitdiff
|
tree
2011-09-23
Naama
Menda
t
y
p
o
commit
|
commitdiff
|
tree
next