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typos
2017-01-23
N
aam
a
Menda
typos
commit
|
commitdiff
|
tree
2017-01-23
Naam
a
Men
d
a
make sure
to fetch only plots associated with
p
henotyping
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
N
a
a
ma M
e
n
da
tw
e
ak pa
t
tern
match
i
ng for block and plot numbers
commit
|
commitdiff
|
tree
2016-12-23
nmenda
script for removing unlinked phenotyp
e
s from cas
s
avabase
commit
|
commitdiff
|
tree
2016-12-02
n
m
enda
switching to
u
s
e
t
he TrialCrea
t
e
and Phenotype
s
St
o
re
.
.
.
commit
|
commitdiff
|
tree
2016-11-03
n
m
e
nd
a
removed
de
p
reca
t
ed use of c
r
eat
e
_with,
r
e
p
laced
with
.
.
.
commit
|
commitdiff
|
tree
2016-11-02
nm
e
nda
ciat trial metadata f
o
r 2014
commit
|
commitdiff
|
tree
2016-11-02
n
men
d
a
adjus
t
c
i
at trials loadi
n
g sc
r
ipt for 2014 t
r
ial d
a
ta
commit
|
commitdiff
|
tree
2016-11-01
nmenda
f
ix sgn anno
t
at
i
o
n file
commit
|
commitdiff
|
tree
2016-10-31
nmen
d
a
Annotati
o
n file
f
r
o
m
A
nu for GD
S
_1670 array
commit
|
commitdiff
|
tree
2016-02-09
Naama Menda
Merge pull
r
equest #7 f
r
om solgeno
m
i
cs/topic/syst
e
m_cvterms
commit
|
commitdiff
|
tree
2016-01-28
nmend
a
u
se stoc
k
_
s
ynony
m
c
v
term instread of "synonym" when
.
.
.
commit
|
commitdiff
|
tree
2016-01-26
nmend
a
load synonyms under stock_pr
o
perty cv n
a
me
commit
|
commitdiff
|
tree
2016-01-26
nmenda
update cv names to un
i
f
o
r
m
values with
o
u
t
spaces
commit
|
commitdiff
|
tree
2015-12-01
nme
n
da
phenotype loader
for ya
m
base da
t
a
fro
m
IITA
commit
|
commitdiff
|
tree
2015-11-24
n
m
enda
fix metadata file ext
e
n
t
i
o
n
commit
|
commitdiff
|
tree
2015-11-19
nme
n
da
loading files f
o
r sweet potato
ph
e
notyping
da
t
a
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
typo in POD
commit
|
commitdiff
|
tree
2014-07-15
N
aama
M
enda
typo
commit
|
commitdiff
|
tree
2014-07-15
Na
a
ma Mend
a
load
e
r for the pepper genome g
e
n
e models V1
.
55
commit
|
commitdiff
|
tree
2014-06-13
Naama Menda
r
emove ve
r
sion number from l
o
cus id for creating
li
n
ks
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Na
a
ma Menda
correct
d
ocumentat
i
on for s
t
o
ring terms w
i
th a
month
s
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
Na
a
m
a
M
enda
fix documentation for loading s
n
p files
commit
|
commitdiff
|
tree
2013-06-25
Naama Menda
roo
t
term for
pl
a
nt_an
a
tomy ha
s
changed si
n
ce we last
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
N
a
a
ma Menda
not a good idea to
a
utomatically update obsolete terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Menda
updated code f
o
r fla
g
ging
obsolete annotations, sin
c
e
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naama Mend
a
print
debu
g
ging info wh
e
n
parents are
stor
e
d
commit
|
commitdiff
|
tree
2013-06-16
Naama Mend
a
c
leaning cl
o
ne names in the loading script
commit
|
commitdiff
|
tree
2013-06-14
n
m
e
nda
fix for stoc
k
s wit
h
a backslash in
their
n
ame
commit
|
commitdiff
|
tree
2013-06-14
nmenda
chang
e
male/female
paren
t
s
t
o
b
e t
h
e
subjects ,
to
.
.
.
commit
|
commitdiff
|
tree
2013-06-09
Na
a
ma Me
n
d
a
remove leading and trail
i
ng
s
paces from al
l
l
o
cus
s
earhc
.
.
.
commit
|
commitdiff
|
tree
2013-05-13
nmend
a
add plot
n
ame to
s
tock uniquen
a
me
commit
|
commitdiff
|
tree
2013-05-07
n
menda
t
ypo
commit
|
commitdiff
|
tree
2013-05-07
nmenda
fixed update query for stock_re
l
a
tionship
w
hen
me
r
ging
.
.
.
commit
|
commitdiff
|
tree
2013-04-25
nmen
d
a
add year pro
j
e
c
t
p
r
o
p for multilocation fil
e
s
commit
|
commitdiff
|
tree
2013-04-13
N
aama Menda
debug info about load
i
ng of plot s
t
ocks
commit
|
commitdiff
|
tree
2013-04-13
Naama Me
n
da
a
dd project name and year options
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
snp loader creates now new st
o
cks if not found in db
commit
|
commitdiff
|
tree
2013-04-12
Na
a
ma Menda
add code f
r
o
m
m
erg
e
commit
|
commitdiff
|
tree
2013-04-12
Naama Mend
a
r
e
s
o
lved conflict
commit
|
commitdiff
|
tree
2013-04-19
nmenda
add more props
to phenotype data
commit
|
commitdiff
|
tree
2013-04-18
n
m
en
d
a
f
ix search
query
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
suppor
t
for multilocation files
commit
|
commitdiff
|
tree
2013-04-07
Naama Menda
refining clone name se
a
rch
commit
|
commitdiff
|
tree
2013-04-07
Naa
m
a Me
n
d
a
skipping non-numeric v
a
lues
commit
|
commitdiff
|
tree
2013-04-07
Naama
Menda
change surviving plants
column head
e
r
commit
|
commitdiff
|
tree
2013-04-17
nmenda
fixed errors
commit
|
commitdiff
|
tree
2013-04-06
Naama Mend
a
l
oader based on
N
RCRI data
.
Should work with othe
r
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Naa
m
a
M
enda
typo
commit
|
commitdiff
|
tree
2013-04-06
Naama Men
d
a
merged
c
ha
n
ges
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
loader for
ca
s
sav
a
projects and
t
h
ei
r
metadata
commit
|
commitdiff
|
tree
2013-04-08
n
m
enda
cassava cl
o
ne loader
f
i
n
is
h
e
d
commit
|
commitdiff
|
tree
2013-04-08
n
menda
fo
r
ce using provided marker name with
o
u
t
c
l
e
a
n
ing
commit
|
commitdiff
|
tree
2013-03-30
Naama Menda
l
o
ader for cassava clones
and syn
o
nyms
commit
|
commitdiff
|
tree
2013-03-28
N
aama Menda
refined op
t
ions f
o
r
loading
s
o
lcap
d
ata
commit
|
commitdiff
|
tree
2012-11-29
Na
a
ma Menda
print shor
t
er mini-ref
commit
|
commitdiff
|
tree
2012-11-29
Naama Mend
a
reference_
i
d in loc
u
sgroup_
m
ember is a dbxref
commit
|
commitdiff
|
tree
2012-11-28
N
aama M
e
nda
c
xg
n
mem
b
ers r
e
tu
r
ns a data
s
tructure
with the loc
u
s
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama
M
enda
function for
returning
t
he second lev
e
l object
o
f locusg
r
oup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
N
aama Menda
option for
p
assing locusgroup_name as an
a
r
g for checking
.
.
.
commit
|
commitdiff
|
tree
2012-11-08
nmenda
fix
c
a
p
italization
commit
|
commitdiff
|
tree
2012-11-05
Naama Menda
t
g
rc wild accessions
commit
|
commitdiff
|
tree
2012-11-05
Naama Mend
a
loader for
tgrc wil
d
accessi
o
ns
commit
|
commitdiff
|
tree
2012-11-06
nmenda
corr
e
ct nu
m
eric chrom
o
some
number
commit
|
commitdiff
|
tree
2012-11-06
n
menda
loader f
o
r updating unige
n
es
linked
t
o loci ba
s
ed on
.
.
.
commit
|
commitdiff
|
tree
2012-11-06
nmenda
option to
r
ead
file names from spread
s
heet
commit
|
commitdiff
|
tree
2012-11-06
nmenda
f
ilter obsolete
loci w
h
e
n
fetching
b
y genome_
l
o
c
us
i
d
commit
|
commitdiff
|
tree
2012-11-04
Naama Me
n
da
ca
s
sava and barley
l
o
a
d
ers
commit
|
commitdiff
|
tree
2012-11-03
Naama Me
n
da
Merge br
a
nch 'ma
s
t
e
r' of github
.
com
:
sol
g
enomi
c
s/Ph
e
nome
commit
|
commitdiff
|
tree
2012-11-03
Naa
m
a Menda
correct tab-delimited
f
ormat
commit
|
commitdiff
|
tree
2012-11-01
nm
e
n
da
correct username for Tomatoma db
commit
|
commitdiff
|
tree
2012-10-31
N
a
ama Mend
a
pop
u
lation should be for mutatns
commit
|
commitdiff
|
tree
2012-10-31
Naama Me
n
da
loader for the Tsuku
b
a
mutants
commit
|
commitdiff
|
tree
2012-10-04
Naama Menda
tweak scale cvtermprop
l
oading s
c
r
i
pt
commit
|
commitdiff
|
tree
2012-07-19
nmenda
ty
p
o
commit
|
commitdiff
|
tree
2012-07-19
nmenda
l
oa
d
er
f
o
r
cassava SNP data
commit
|
commitdiff
|
tree
2012-05-02
Naama Menda
add updating of
genome locus identifier,
desc
r
i
p
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Naama
M
enda
add a user
n
ame option
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
typo
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
a
dded a check fo
r
stock_owner row
commit
|
commitdiff
|
tree
2012-04-17
Naa
m
a Menda
corrected loader for
c
assava
p
henotypi
n
g projects
commit
|
commitdiff
|
tree
2012-04-17
N
aama Menda
correct
e
d loader f
o
r cassava
phenotypin
g
project
s
commit
|
commitdiff
|
tree
2012-03-15
Naa
m
a
M
enda
error
in fet
c
h
ing dbxref
a
ccession for a pub object
commit
|
commitdiff
|
tree
2012-03-15
N
aama Menda
mod
i
f
i
ed o
n
tology association
sc
r
ipt to wor
k
with stocks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naam
a
Me
n
da
updated dump scri
p
t
.
Ma
k
e this a
cron
j
ob
.
.
commit
|
commitdiff
|
tree
2012-01-11
Naama M
e
nda
removing
version numbers fro
m
Sol
y
c gene ids
commit
|
commitdiff
|
tree
2012-01-09
Naama Menda
m
o
ve
d
th
e
ge
n
otype json t
o
g
enotye
p
p
rop
commit
|
commitdiff
|
tree
2012-01-06
Naam
a
Men
d
a
s
c
ript for re
l
oading the
solcap snp p
o
sitions
as designated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Naama Menda
loader f
o
r
solcap Infinium array snp genotypes
commit
|
commitdiff
|
tree
2011-12-20
N
a
ama Menda
fix
e
d
t
ypos
commit
|
commitdiff
|
tree
2011-12-18
Naama Me
n
da
loader
for the c
a
ssava phenoty
p
es
commit
|
commitdiff
|
tree
2011-12-17
N
aama Menda
silly
typo
commit
|
commitdiff
|
tree
2011-12-16
Naama Menda
pol
i
s
hing s
c
r
i
pt for insert
i
n
g/u
p
da
t
ing p
o
tato l
o
ci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naam
a
Menda
load
e
r for
t
he
p
otat
o
genome loci
commit
|
commitdiff
|
tree
2011-12-15
Naama Mend
a
printing
t
o
a
l
a
r
g
e
sequence file
commit
|
commitdiff
|
tree
2011-12-14
Naama
Menda
fixed fe
t
c
hing of Solyc mr
n
a
s
e
quences
commit
|
commitdiff
|
tree
2011-12-14
N
a
ama Men
d
a
adding i
t
ag mrn
a
sequences to
l
oci blast
d
b
commit
|
commitdiff
|
tree
2011-11-23
Naama Menda
fix
e
d cvterm
name
f
or plot
and membe
r
stock
r
elations
h
i
p
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
capital
i
zin
g
Quality term
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
refining add
_
un
i
g
ene method
commit
|
commitdiff
|
tree
next