repo.or.cz
/
phenome.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
typos
2017-01-23
N
a
ama Menda
typos
commit
|
commitdiff
|
tree
2017-01-23
Naam
a
M
e
nda
make sure to fetc
h
only pl
o
ts a
s
sociated with phenot
y
ping
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
Naa
m
a Menda
tweak
p
attern matching for bloc
k
and
p
lot numbers
commit
|
commitdiff
|
tree
2016-02-09
Naama Menda
Merge pull req
u
est #7 from solg
e
nomics/topic/s
y
stem_cvte
r
ms
commit
|
commitdiff
|
tree
2015-03-16
Naama Me
n
da
adjust CIAT trials
l
oader to updat
e
s sent
f
rom Hernan
commit
|
commitdiff
|
tree
2015-02-27
Naama Menda
m
anually load bulk locus curator annotations
commit
|
commitdiff
|
tree
2015-02-17
N
a
ama Menda
loade
r
f
o
r ciat cassava ph
e
notyping d
a
ta
commit
|
commitdiff
|
tree
2015-02-16
Naam
a
Menda
ad
d
new ciat proj
e
ct types
commit
|
commitdiff
|
tree
2015-02-13
Naam
a
Menda
mak
e
sure pr
o
jects are
not d
u
plic
a
ted
commit
|
commitdiff
|
tree
2015-02-12
Naama
Menda
load/fin
d
breeding program
,
add nd_geol
o
cation_i
d
.
.
.
commit
|
commitdiff
|
tree
2015-02-12
Naama Me
n
da
modified lo
a
der f
o
r CIAT trial data, t
r
i
a
l
t
y
p
es, geolocation
s
commit
|
commitdiff
|
tree
2014-07-15
N
aam
a
Me
n
d
a
ty
p
o in POD
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
typo
commit
|
commitdiff
|
tree
2014-07-15
N
a
ama Men
d
a
loader
fo
r
t
h
e pepper genome g
e
n
e
model
s
V
1
.
55
commit
|
commitdiff
|
tree
2014-06-13
Naama
M
enda
remove version number from l
o
cus
i
d for creating l
i
nks
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Naama Mend
a
c
orrect do
c
u
ment
a
tion fo
r
stori
n
g terms
w
ith a
m
onths
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
Naama Menda
fix document
a
tion for loadi
n
g snp
f
iles
commit
|
commitdiff
|
tree
2013-06-25
Naama Me
n
da
ro
o
t
term for plan
t
_a
n
atomy
has
c
h
anged sinc
e
we last
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Men
d
a
not a
good idea t
o
automatically updat
e
obsolete terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
N
aama M
e
nda
u
p
dated code for flagging obsolete
annotations, since
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naama M
e
nda
print debug
g
ing info when par
e
nts
a
re store
d
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
cleani
n
g cl
o
ne names i
n
the loadi
n
g
s
cr
i
pt
commit
|
commitdiff
|
tree
2013-06-09
Naama
Men
d
a
rem
o
ve leading and trail
i
ng sp
a
ces
f
rom al
l
locus se
a
rhc
.
.
.
commit
|
commitdiff
|
tree
2013-04-13
N
a
a
m
a Menda
debug info about loa
d
ing
o
f plot s
t
ocks
commit
|
commitdiff
|
tree
2013-04-13
N
a
a
ma
M
enda
a
d
d
project name
and yea
r
opt
i
ons
commit
|
commitdiff
|
tree
2013-04-13
Naama Me
n
da
snp
l
oad
e
r
create
s
now n
e
w
st
o
cks if not found in db
commit
|
commitdiff
|
tree
2013-04-12
Naa
m
a Menda
add code from merge
commit
|
commitdiff
|
tree
2013-04-12
N
a
ama Menda
res
o
lved co
n
f
lict
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
supp
o
r
t for multilocation files
commit
|
commitdiff
|
tree
2013-04-07
Na
a
ma
M
enda
refini
n
g clone n
a
me sear
c
h
commit
|
commitdiff
|
tree
2013-04-07
Naama Me
n
da
s
kipp
i
ng non-
n
u
m
eri
c
val
u
es
commit
|
commitdiff
|
tree
2013-04-07
Naama
Mend
a
change su
r
viving
plants
column
h
eader
commit
|
commitdiff
|
tree
2013-04-06
Naama M
e
nda
loader based on NRCRI data
.
Should wo
r
k with other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
typo
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
m
e
rge
d
changes
commit
|
commitdiff
|
tree
2013-04-06
N
aama Menda
loader for cassav
a
projects
a
nd their metadata
commit
|
commitdiff
|
tree
2013-03-30
Na
a
ma
Menda
lo
a
der for cassava clones a
n
d syno
n
y
ms
commit
|
commitdiff
|
tree
2013-03-28
Naama Menda
r
e
f
i
ned o
p
tions
f
or loading solcap data
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
print
sho
r
ter mini-r
e
f
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
reference_id in locusgroup_member is
a
dbxref
commit
|
commitdiff
|
tree
2012-11-28
Naa
m
a
M
enda
cxgn members ret
u
rns a data structure with the locu
s
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naa
m
a
M
e
nda
func
t
i
on for
returning the second l
e
vel obje
c
t of locusgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Me
n
da
option fo
r
passing locusgroup_name as
a
n arg for ch
e
c
k
ing
.
.
.
commit
|
commitdiff
|
tree
2012-11-05
Naama Menda
tgrc wi
l
d
a
ccessions
commit
|
commitdiff
|
tree
2012-11-05
Naa
m
a Menda
loader f
o
r tgrc wild ac
c
essi
o
n
s
commit
|
commitdiff
|
tree
2012-11-04
Naama
M
en
d
a
c
a
ssava
a
n
d barl
e
y loaders
commit
|
commitdiff
|
tree
2012-11-03
Naama
M
enda
Merge bra
n
ch 'm
a
ste
r
' of github
.
com:sol
g
enomic
s
/
P
h
enome
commit
|
commitdiff
|
tree
2012-11-03
Naama
M
enda
correct tab-delimited format
commit
|
commitdiff
|
tree
2012-10-31
N
a
ama Me
n
da
popula
t
ion
s
houl
d
be for
m
utatns
commit
|
commitdiff
|
tree
2012-10-31
Naama Menda
l
oa
d
e
r
f
or th
e
T
s
ukub
a
mutants
commit
|
commitdiff
|
tree
2012-10-04
N
a
ama
M
e
n
d
a
twea
k
scale cv
t
e
r
mprop
l
o
a
d
ing script
commit
|
commitdiff
|
tree
2012-05-02
Naama Menda
add updating
of genome locus id
e
ntifier, description
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Na
a
m
a
M
enda
add a u
s
er
n
ame option
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
ty
p
o
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
a
dded a che
c
k for stock_
o
w
n
e
r
row
commit
|
commitdiff
|
tree
2012-04-17
Naama
M
enda
corre
c
ted loader fo
r
cas
s
ava phenotyp
i
ng pro
j
ects
commit
|
commitdiff
|
tree
2012-04-17
Naama Me
n
da
corrected
loader for
c
a
ssava phenotyping pro
j
ects
commit
|
commitdiff
|
tree
2012-03-15
Naama Men
d
a
error
i
n
f
etch
i
n
g
dbx
r
ef a
c
cession for a
p
u
b
object
commit
|
commitdiff
|
tree
2012-03-15
N
aama
Menda
modified on
t
ology ass
o
ciatio
n
s
cr
i
p
t
to w
o
rk with
s
tock
s
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Na
a
ma M
e
nda
upd
a
ted dump
s
c
ript
.
Make
this a cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
N
a
ama
M
enda
removing version numbe
r
s from
Solyc gene ids
commit
|
commitdiff
|
tree
2012-01-09
Naama Me
n
d
a
m
oved
t
he genotype
jso
n
to genotyepprop
commit
|
commitdiff
|
tree
2012-01-06
Naama Me
n
d
a
scri
p
t fo
r
reloadin
g
the solcap snp posit
i
ons
a
s
d
esignated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Naa
m
a Menda
loader
f
or solc
a
p Infinium a
r
ray snp g
e
n
o
types
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
fixed typos
commit
|
commitdiff
|
tree
2011-12-18
Naa
m
a Menda
l
o
ader for the cassava
p
h
e
notypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
silly
t
ypo
commit
|
commitdiff
|
tree
2011-12-16
N
a
a
m
a Men
d
a
p
olishing
s
c
r
ipt for ins
e
rting/updati
n
g potato loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Men
d
a
loader fo
r
the
p
otato gen
o
me
l
o
c
i
commit
|
commitdiff
|
tree
2011-12-15
N
a
a
ma Menda
pr
i
nting to a
l
arge sequenc
e
file
commit
|
commitdiff
|
tree
2011-12-14
Naama
Menda
fixed fetching
of Solyc mrna seq
u
ences
commit
|
commitdiff
|
tree
2011-12-14
Na
a
ma Menda
a
dding itag mrna sequences to loci b
l
a
st d
b
commit
|
commitdiff
|
tree
2011-11-23
Naama
M
end
a
fixed cvterm n
a
m
e for plot and mem
b
er stock r
e
lati
o
ns
h
ip
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama M
e
nda
capitalizing Quality term
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
ref
i
ning add_unigene method
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
Merge br
a
nc
h
'
m
ast
e
r' into
t
opic/locu
s
_
c
ontroller
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
missing bind value
commit
|
commitdiff
|
tree
2011-11-15
Naama Me
n
da
added loc
u
s fiel
d
to
the
s
e
a
r
ch
commit
|
commitdiff
|
tree
2011-11-15
N
aama Me
n
d
a
add
i
ng di
s
connect for db
h
wi
t
hout
autocommit
commit
|
commitdiff
|
tree
2011-11-08
Naama Menda
up
d
ate DBIx::C
l
ass ph
e
nome schema
c
lasses
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
Merge
branch 'master' into topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-07
Naama Me
n
da
re
s
olved con
f
lict
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
added
a
cces
s
ors f
o
r ge
n
ome_
l
ocus name
field
commit
|
commitdiff
|
tree
2011-11-09
N
a
a
ma Me
n
da
disabling a
u
tocomm
i
t
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
pa
t
ch for adding a loc
u
s
f
ield
t
o t
h
e
locus
t
a
ble
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Na
a
ma Men
d
a
adding p
h
enotype props
to sol
c
ap phenotypes
commit
|
commitdiff
|
tree
2011-10-30
Na
a
m
a Men
d
a
using db
c
-
>dbh
i
n
s
tead of CXGM:
:
D
B
::Connection
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
obsole
t
ing
l
oc
u
s al
i
as if
t
he
I
T
A
G id
i
s just
t
he al
i
as
commit
|
commitdiff
|
tree
2011-10-15
Naama Men
d
a
script for obsole
t
ing ITAG lo
c
i f
r
om phe
n
ome
.
locus
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
removing trailing s
p
a
c
es from
u
nit name
commit
|
commitdiff
|
tree
2011-10-15
Naam
a
M
enda
removing trailing spa
c
esfromunit nam
e
commit
|
commitdiff
|
tree
2011-10-14
Naama Menda
fixing
b
u
g i
n
m
erge_locu
s
function when
m
e
rged
loc
u
s
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
m
ak
i
n
g
sure plant ha
i
t t
e
rm
s
ar
e
found
commit
|
commitdiff
|
tree
2011-10-12
Naam
a
Menda
looking at direct
c
hild te
r
ms for qualitative terms
commit
|
commitdiff
|
tree
2011-10-11
Naam
a
Mend
a
l
o
ading q
u
a
litative terms
correc
t
ly
commit
|
commitdiff
|
tree
2011-10-11
Naama
Menda
adding
unit on
t
ology cv
t
e
r
ms
t
o
the p
h
en
o
tye
p
s
commit
|
commitdiff
|
tree
2011-10-03
Naa
m
a Men
d
a
just warning if
p
aren
t
stock
is not found
commit
|
commitdiff
|
tree
2011-10-03
Naa
m
a
Mend
a
typo
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
parsing m
o
re
options for solc
a
p
i
mage file
s
commit
|
commitdiff
|
tree
2011-10-02
Naama
Mend
a
find
t
he year of
the proect
from the
metad
a
ta f
i
le
commit
|
commitdiff
|
tree
next