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added a check for stock_owner row
2012-04-18
N
a
ama Menda
a
dded a check for stock_owner row
commit
|
commitdiff
|
tree
2012-04-17
Naama
M
e
nda
corrected loader for c
a
ssava
p
henotyp
i
n
g
p
r
o
jec
t
s
commit
|
commitdiff
|
tree
2012-04-17
N
aama
M
enda
c
orrected loader
f
or cassava phenotyping pro
j
ec
t
s
commit
|
commitdiff
|
tree
2012-03-15
Naam
a
Me
n
da
error
in
fetching dbx
r
ef accessio
n
for a
pub o
b
ject
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
modified ontology
as
s
ociation s
c
ript to work w
i
th
stocks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Na
a
ma Menda
update
d
dump
s
c
r
ipt
.
Make this a cron
jo
b
.
.
commit
|
commitdiff
|
tree
2012-01-11
Na
a
ma Menda
removing version n
u
m
ber
s
from Solyc gene ids
commit
|
commitdiff
|
tree
2012-01-09
Naama Me
n
da
moved the genotype json t
o
genot
y
eppr
o
p
commit
|
commitdiff
|
tree
2012-01-06
Naama Menda
scri
p
t for reloading
the solcap snp positions as de
s
i
g
n
ated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
N
aama
Menda
loader for solcap
Infinium
a
r
r
ay snp
g
en
o
types
commit
|
commitdiff
|
tree
2011-12-20
Naama Me
n
d
a
fi
x
e
d
typos
commit
|
commitdiff
|
tree
2011-12-18
Naama Menda
loa
d
er for the cassava phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
silly
typo
commit
|
commitdiff
|
tree
2011-12-16
N
aama
Menda
polishing scrip
t
for inserting/updating potato
l
o
c
i
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama
M
e
nda
loader for the pota
t
o genom
e
loc
i
commit
|
commitdiff
|
tree
2011-12-15
Naa
m
a Menda
printing to a large sequence f
i
le
commit
|
commitdiff
|
tree
2011-12-14
Naama Men
d
a
f
ixed fetchi
n
g of Solyc mrna sequ
e
n
c
e
s
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
adding itag mrn
a
sequences to loci blast db
commit
|
commitdiff
|
tree
2011-11-23
Naama Menda
fixed cvter
m
nam
e
for plot and member stock rela
t
io
n
ship
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama Mend
a
capitalizing Quality term
commit
|
commitdiff
|
tree
2011-11-22
Na
a
m
a Menda
r
efining ad
d
_unigene meth
o
d
commit
|
commitdiff
|
tree
2011-11-16
Naama Me
n
da
Merge branch 'master' into
topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-16
Naama
Menda
m
i
ssing bi
n
d value
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
add
e
d locus fi
e
ld to the search
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
adding disco
n
n
e
ct
for
dbh wi
t
hout autocommit
commit
|
commitdiff
|
tree
2011-11-08
Naa
m
a
M
enda
update DBIx::Cla
s
s
phenome
schema cla
s
ses
commit
|
commitdiff
|
tree
2011-11-07
Naama Men
d
a
Me
r
ge branch 'master' i
n
to topi
c
/lo
c
us_controller
commit
|
commitdiff
|
tree
2011-11-07
Na
a
m
a
Menda
re
s
ol
v
ed conflict
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
adde
d
accesso
r
s
for genome_loc
u
s
name
f
i
e
ld
commit
|
commitdiff
|
tree
2011-11-09
Naama Mend
a
disabling
a
utocommit
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
patc
h
for adding a l
o
cus field t
o
the locus table
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Menda
adding phenotype
p
rops
to s
o
l
c
ap phen
o
types
commit
|
commitdiff
|
tree
2011-10-30
Naam
a
Mend
a
using d
b
c->dbh i
n
stead of CXG
M
::DB::Connection
commit
|
commitdiff
|
tree
2011-10-15
Na
a
ma Menda
obsoleting
l
o
cus alias i
f
the ITAG i
d
is
j
ust the alias
commit
|
commitdiff
|
tree
2011-10-15
N
aa
m
a Menda
script for
obs
o
letin
g
ITAG loci from p
h
e
n
ome
.
locus
commit
|
commitdiff
|
tree
2011-10-15
Naama
Menda
r
emo
v
ing t
r
aili
n
g
sp
a
ces
f
rom uni
t
n
a
me
commit
|
commitdiff
|
tree
2011-10-15
Naama M
e
nda
removing t
r
ai
l
ing sp
a
c
esfromunit name
commit
|
commitdiff
|
tree
2011-10-14
N
a
ama Menda
fix
i
ng bug in me
r
g
e_locus func
t
ion when mer
g
ed locus
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama
Menda
making sure plant hait
t
er
m
s
a
re found
commit
|
commitdiff
|
tree
2011-10-12
Naam
a
Menda
looking at direct ch
i
l
d
t
erms
f
or
q
ualitati
v
e terms
commit
|
commitdiff
|
tree
2011-10-11
Naama Men
d
a
loading qualitative term
s
co
r
r
ectly
commit
|
commitdiff
|
tree
2011-10-11
Naama Menda
a
d
d
ing
u
n
it ont
o
logy cvterms to
the
p
henotyeps
commit
|
commitdiff
|
tree
2011-10-03
Naam
a
Me
n
da
j
u
st wa
r
ning if
paren
t
stock is not
foun
d
commit
|
commitdiff
|
tree
2011-10-03
N
aa
m
a Menda
t
y
po
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
parsing more
opti
o
ns for s
o
lcap ima
g
e files
commit
|
commitdiff
|
tree
2011-10-02
N
aama Menda
find
t
he
y
ear
o
f
the proect from
t
he metadata file
commit
|
commitdiff
|
tree
2011-10-02
Na
a
ma Menda
year shou
l
d be a pr
o
pert
y
of
the project
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
searcg is
b
etter th
a
n
find he
r
e
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
skipping for non-
e
xisting plots
commit
|
commitdiff
|
tree
2011-09-27
N
aama Menda
checking correctly i
f
an imag
e
is loaded and
i
f was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
N
aama Menda
t
ypo
commit
|
commitdiff
|
tree
2011-09-27
Na
a
ma Me
n
da
better print
i
ng of error me
s
s
a
ges
commit
|
commitdiff
|
tree
2011-09-27
Naa
m
a Me
n
da
a
d
ded
a
check f
o
r
existing stock-ima
g
e link
s
commit
|
commitdiff
|
tree
2011-09-23
N
a
ama Menda
last typ
o
?
commit
|
commitdiff
|
tree
2011-09-23
Naama Me
n
da
typo
commit
|
commitdiff
|
tree
2011-09-23
Naama
Menda
t
ypo
commit
|
commitdiff
|
tree
2011-09-23
N
aama M
e
nda
added e
x
c
eption for planting date
property
commit
|
commitdiff
|
tree
2011-09-23
N
aama
M
enda
added year o
p
tion for finding unique plot
n
ames
commit
|
commitdiff
|
tree
2011-09-18
Na
a
ma Men
d
a
setti
n
g the transaction properly
commit
|
commitdiff
|
tree
2011-09-18
Na
a
m
a
Men
d
a
checking if
a synon
y
m value was already
l
oa
d
ed
commit
|
commitdiff
|
tree
2011-09-17
Naama
Menda
loader for solcap images
commit
|
commitdiff
|
tree
2011-09-17
Naam
a
Menda
u
s
ing txn_do
for the
transacti
o
n
commit
|
commitdiff
|
tree
2011-09-16
Naama Mend
a
modified options for loading solcap TA
d
ata
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
a
d
d
ed parsing
o
f qu
a
l
ita
t
i
v
e traits into the toma
t
o
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
N
a
ama Menda
fi
x
ed loading stock owner
i
nto the right
p
lace
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
no need to c
l
one the dbh
commit
|
commitdiff
|
tree
2011-09-14
Na
a
m
a
Menda
added missing pheno
m
e DBIC classe
s
commit
|
commitdiff
|
tree
2011-09-14
Na
a
ma Men
d
a
u
sing CXGN:
:
Phenome::Schem
a
for checking/insert
i
ng
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama
Menda
removed out
d
ated loading script
commit
|
commitdiff
|
tree
2011-09-14
Naa
m
a Men
d
a
upda
t
e
d script
for loa
d
i
n
g solcap accessions
commit
|
commitdiff
|
tree
2011-09-14
N
a
a
m
a Men
d
a
updated
CXGN::P
h
e
nome::Schema classes
commit
|
commitdiff
|
tree
2011-09-13
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-04
Naama Menda
loading
s
cript for SolCAP po
t
ato images
commit
|
commitdiff
|
tree
2011-09-02
N
a
a
ma M
e
nda
loder for images from Sandy Knapp
commit
|
commitdiff
|
tree
2011-08-31
Naa
m
a Mend
a
adding date prop to exp
e
riment
s
commit
|
commitdiff
|
tree
2011-08-28
N
aama Men
d
a
loa
d
ing script for potato
s
ol
c
ap data
.
Hope
f
ully next
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama Menda
loader
f
or TAIR loci
commit
|
commitdiff
|
tree
2011-06-19
Naama M
e
nda
updated sol
c
ap stuff for reloa
d
ing
the
potat
o
2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
Naa
m
a Menda
patch for
c
hanges in
C
ha
d
o ND schema
commit
|
commitdiff
|
tree
2011-04-22
Naam
a
Me
n
da
db
pa
t
ch for granting
d
elete on me
t
adata t
o
w
e
b_usr
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Naama M
e
nda
updated D
B
Ix
c
lasses , no
more phenom
e
.
phenoty
p
e tabl
e
commit
|
commitdiff
|
tree
2011-04-18
Naam
a
M
enda
sk
i
pping metadata in
s
ert
if
one of the FKs is null
commit
|
commitdiff
|
tree
2011-04-17
Naa
m
a Menda
a
dd
i
ng
w
eb_usr permiss
i
o
n
s to me
t
a
d
ata table
commit
|
commitdiff
|
tree
2011-04-17
Naa
m
a Men
d
a
typo i
n
qu
e
ry
commit
|
commitdiff
|
tree
2011-04-17
N
a
a
m
a
Menda
forg
o
t
t
o add
w
eb_u
s
r permissions
commit
|
commitdiff
|
tree
2011-04-17
Na
a
ma Menda
using s
t
ock_allele and stock_image inste
a
d of stock
p
r
op
commit
|
commitdiff
|
tree
2011-04-16
Naama M
e
nda
db patch for migrating
st
o
ck image, allele,
and ow
n
er
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
refactoring functions
t
h
a
t
use individu
a
ls
.
Now we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naam
a
M
end
a
typos
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
e
n
da
deleting first existing allele
links
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
db
p
a
t
ch for corre
c
t
ly storing
a
ll
alleles l
i
nked with
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
s
e
lecting all alleles
,
includin
g
defaults one
s
commit
|
commitdiff
|
tree
2011-04-01
Na
a
ma Menda
removed sea
r
c
h
ing
l
oci by stock phenotypes
.
To do this
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
N
a
ama Menda
add
e
d an option to p
a
ss t
h
e image_path
.
t
h
is lets run
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
Naam
a
Menda
f
o
rg
o
t to allow d
u
pli
c
ate values
.
Without this multiple
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Me
n
da
p
o
lished loading script for lycotill ima
g
es
commit
|
commitdiff
|
tree
2011-03-28
Naa
m
a
M
enda
loading script
for
lycotill acces
s
ions
commit
|
commitdiff
|
tree
2011-03-23
Naama Menda
dbpatch for fix
i
n
g
locus_marker FK
commit
|
commitdiff
|
tree
2011-03-22
N
aama
Menda
ad
d
ed an interim
f
u
nction for getting popul
a
ti
o
n
object
.
.
.
commit
|
commitdiff
|
tree
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