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Merge branch 'master' into topic/locus_controller
2011-11-16
Naama
M
enda
Merge branc
h
'master' into
topic/lo
c
us_c
o
n
t
rol
l
er
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
m
i
ssing bind
v
alu
e
commit
|
commitdiff
|
tree
2011-11-15
Naa
m
a Mend
a
added locu
s
f
i
eld
t
o the search
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
ad
d
ing
disconnect
for d
b
h
without
a
ut
o
c
o
m
mit
commit
|
commitdiff
|
tree
2011-11-08
Naama Mend
a
u
pdate DBIx:
:
Class phenome sche
m
a classes
commit
|
commitdiff
|
tree
2011-11-07
N
a
a
ma
Me
n
da
Me
r
ge br
a
nch 'm
a
ster' into
t
opic/locus_contr
o
l
l
er
commit
|
commitdiff
|
tree
2011-11-07
N
aama Men
d
a
r
e
solved
conflict
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
adde
d
a
c
cessors for genome_lo
c
us
n
ame field
commit
|
commitdiff
|
tree
2011-11-09
Naa
m
a Menda
dis
a
bling
a
u
tocommit
commit
|
commitdiff
|
tree
2011-11-07
Naama Mend
a
patch for a
d
di
n
g a l
o
cus field t
o
t
h
e locus
t
ab
l
e
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama M
e
nda
adding phenotype props to so
l
cap ph
e
n
o
types
commit
|
commitdiff
|
tree
2011-10-30
Naama
M
en
d
a
usin
g
dbc->dbh i
n
stead of CXGM::DB:
:
Connection
commit
|
commitdiff
|
tree
2011-10-15
Naama Me
n
da
obsolet
i
ng locus alia
s
if
the ITAG id is ju
s
t the
ali
a
s
commit
|
commitdiff
|
tree
2011-10-15
Na
a
ma Menda
script for obsol
e
ting ITAG loci from phenome
.
locus
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
removi
n
g t
r
ailing spa
c
es from
uni
t
name
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
removing tra
i
l
i
ng spacesfr
o
munit name
commit
|
commitdiff
|
tree
2011-10-14
Naama M
e
nda
fixing b
u
g
in me
r
ge_locus funct
i
on when merged locus
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naa
m
a Menda
making sure plant hait ter
m
s are found
commit
|
commitdiff
|
tree
2011-10-12
Naama
Me
n
da
looking a
t
direct child terms for qualitati
v
e
te
r
ms
commit
|
commitdiff
|
tree
2011-10-11
Naama Menda
l
oading quali
t
ative terms correctly
commit
|
commitdiff
|
tree
2011-10-11
Naam
a
Menda
adding
unit ontolo
g
y cvt
e
rm
s
t
o
the phenotyeps
commit
|
commitdiff
|
tree
2011-10-03
Naama Me
n
d
a
just w
a
rn
i
n
g
i
f parent stock is not
found
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-10-03
Naa
m
a Menda
parsing more options for
solcap i
m
age file
s
commit
|
commitdiff
|
tree
2011-10-02
N
a
ama M
e
nd
a
find th
e
year
o
f
the proect f
r
o
m
th
e
metadata fi
l
e
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
y
ear sh
o
u
ld be a prope
r
ty
o
f
the
p
roject
commit
|
commitdiff
|
tree
2011-10-02
Naama Men
d
a
sear
c
g is better than
f
ind her
e
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
t
ypo
commit
|
commitdiff
|
tree
2011-09-27
Naa
m
a Menda
skipping for non-ex
i
sting plo
t
s
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
check
i
ng c
o
rrectly if
a
n image is load
e
d and if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
b
etter printing
o
f e
r
ror
mess
a
ges
commit
|
commitdiff
|
tree
2011-09-27
Naama Mend
a
a
d
ded a check fo
r
e
xisting stock-
i
m
a
ge
l
i
n
ks
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
last
t
ypo?
commit
|
commitdiff
|
tree
2011-09-23
Naama Me
n
da
typo
commit
|
commitdiff
|
tree
2011-09-23
Naama Men
d
a
t
y
p
o
commit
|
commitdiff
|
tree
2011-09-23
N
aama Me
n
da
added exception
for planting
d
ate property
commit
|
commitdiff
|
tree
2011-09-23
Naama Me
n
d
a
a
d
de
d
y
e
ar option for find
i
ng u
n
i
q
ue plot names
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
settin
g
th
e
tran
s
action prope
r
ly
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
chec
k
ing
i
f a
s
ynonym value was already loaded
commit
|
commitdiff
|
tree
2011-09-17
Naa
m
a Menda
loade
r
for so
l
cap im
a
ges
commit
|
commitdiff
|
tree
2011-09-17
Naama M
e
nda
using txn_do for t
h
e transaction
commit
|
commitdiff
|
tree
2011-09-16
N
a
ama Me
n
da
modified options for loadi
n
g
s
ol
c
ap TA
d
ata
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
ad
d
e
d parsing of q
u
alita
t
ive traits into the tomato
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Na
a
m
a
Menda
fixed loadin
g
stock owner
i
nto the righ
t
place
commit
|
commitdiff
|
tree
2011-09-14
Na
a
ma Menda
no need to clone the dbh
commit
|
commitdiff
|
tree
2011-09-14
N
a
a
m
a Menda
added
missin
g
ph
e
n
o
me DBI
C
c
l
as
s
es
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
using C
X
GN::Phenome::Schema for chec
k
ing/inserting
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama M
e
n
d
a
removed outdated loading sc
r
ipt
commit
|
commitdiff
|
tree
2011-09-14
Naam
a
M
enda
updated scrip
t
fo
r
loading solcap ac
c
ess
i
ons
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
updated CXG
N
::Phenome
:
:Schema
c
lasses
commit
|
commitdiff
|
tree
2011-09-13
Na
a
ma Menda
t
y
p
o
commit
|
commitdiff
|
tree
2011-09-04
N
aama Men
d
a
lo
a
ding script for
S
olCAP pot
a
to ima
g
es
commit
|
commitdiff
|
tree
2011-09-02
Naama Mend
a
loder for i
m
ages from Sandy Knapp
commit
|
commitdiff
|
tree
2011-08-31
Naama M
e
n
da
adding
d
ate
p
ro
p
to exp
e
r
i
ments
commit
|
commitdiff
|
tree
2011-08-28
Naama
Menda
loa
d
ing script for
p
o
tato sol
c
ap d
a
ta
.
Hopefull
y
ne
x
t
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama Menda
l
o
ader for TAIR loci
commit
|
commitdiff
|
tree
2011-06-19
Naama Menda
updated solcap stuf
f
for reload
i
ng the
potato 2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
Naam
a
Menda
p
a
tch
f
or changes in
C
hado N
D
schema
commit
|
commitdiff
|
tree
2011-04-22
N
a
ama Menda
db patch for gran
t
ing delet
e
o
n metadata to web_us
r
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Naama
Me
n
da
updated DBIx cl
a
sses ,
n
o more phenome
.
phenotype table
commit
|
commitdiff
|
tree
2011-04-18
Naa
m
a Me
n
da
skipp
i
ng metadata insert if
one of the FKs is
n
u
l
l
commit
|
commitdiff
|
tree
2011-04-17
Naama Menda
a
dd
i
ng web_usr permi
s
sions
t
o metad
a
ta tab
l
e
commit
|
commitdiff
|
tree
2011-04-17
Naama Menda
t
y
p
o
i
n query
commit
|
commitdiff
|
tree
2011-04-17
Naama Menda
f
or
g
ot to add web_usr permissions
commit
|
commitdiff
|
tree
2011-04-17
Naama
M
end
a
u
s
ing stoc
k
_
allele and stoc
k
_
i
mage ins
t
ead of stockprop
commit
|
commitdiff
|
tree
2011-04-16
N
a
ama Menda
d
b patch
fo
r
migr
a
ting sto
c
k
imag
e
,
allele, and ow
n
er
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
refactoring functi
o
ns
that
u
se individuals
.
Now we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Na
a
ma Mend
a
typos
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
deleting
f
irst ex
i
sting allele links
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
db patch for correctly storing all
a
lleles linked with
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Na
a
ma Menda
s
e
lecting all al
l
eles, including defa
u
lts ones
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
removed searching loci by
s
tock phenotypes
.
T
o
do this
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Na
a
ma Me
n
da
added an option to p
a
ss the im
a
ge_path
.
t
h
is l
e
ts r
u
n
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
Naa
m
a Menda
forgot t
o
allow dupli
c
ate val
u
es
.
With
o
ut this multiple
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
N
aam
a
Men
d
a
polished
l
oading script for lycoti
l
l ima
g
es
commit
|
commitdiff
|
tree
2011-03-28
Naama M
e
nda
l
o
a
d
ing script fo
r
lycotill
acces
s
ions
commit
|
commitdiff
|
tree
2011-03-23
Naama Menda
dbpatch for fixing lo
c
us_mark
e
r FK
commit
|
commitdiff
|
tree
2011-03-22
Naama Menda
added an int
e
ri
m
f
u
nct
i
on for getti
n
g
p
opulation object
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
N
a
ama Menda
db patch for moving stock annot
a
t
i
o
ns
f
rom stock_dbxref
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Naama Me
n
da
added miss
i
n
g
dependency to db pathc
commit
|
commitdiff
|
tree
2011-03-09
N
a
ama Menda
silly typ
o
in dbp
a
tch
commit
|
commitdiff
|
tree
2011-03-09
Naama Menda
db patch
for t
h
e missing lin
k
to stock_id f
r
om
the
.
.
.
commit
|
commitdiff
|
tree
2011-03-04
N
a
ama Me
n
da
silly typo
commit
|
commitdiff
|
tree
2011-03-03
N
a
a
m
a Mend
a
fixed l
o
ading exp
e
riment ids for
e
a
c
h stock phenot
y
ped
commit
|
commitdiff
|
tree
2011-02-07
N
aama
Menda
db pa
t
h for addi
n
g un
d
ef option to allel
e
mode_of_in
h
eritanc
.
.
.
commit
|
commitdiff
|
tree
2010-12-08
Naama Mend
a
filtering obsolete loci and non-current unigenes
commit
|
commitdiff
|
tree
2010-12-01
Naam
a
Menda
pa
t
ch fo
r
upda
t
ing
t
he uni
q
ue constr
a
int on
n
d_experi
m
ent_ph
.
.
.
commit
|
commitdiff
|
tree
2010-11-24
Naama Menda
updating ch
r
om
o
some number for loci with itag
m
atch
e
s
commit
|
commitdiff
|
tree
2010-11-24
N
aama Menda
f
i
x
ed typos i
n
db patch
commit
|
commitdiff
|
tree
2010-11-24
N
aama Menda
setting itag s
y
nonym
p
refe
r
r
e
d=f
commit
|
commitdiff
|
tree
2010-11-24
Naa
m
a Mend
a
loading s
c
ript for ITAG2 - loci matches
commit
|
commitdiff
|
tree
2010-11-24
Naama
Menda
got rid of
more l
a
st_insert_id calling
commit
|
commitdiff
|
tree
2010-11-24
Naama Menda
getting ri
d
of si
l
ly last_i
n
ser
t
_id
commit
|
commitdiff
|
tree
2010-11-05
Naama Me
n
da
another fix for query returning database id
commit
|
commitdiff
|
tree
2010-11-05
Naama Menda
f
ixed i
n
s
ert
q
ueries to return
t
he da
t
abase
i
d,
since
.
.
.
commit
|
commitdiff
|
tree
2010-11-05
Naama Menda
fixed a
b
ug
in gett
i
ng dat
a
b
a
se id aft
e
r an insert
commit
|
commitdiff
|
tree
2010-11-03
N
a
ama Mend
a
upda
t
ed
version for
B
CS requ
i
red
f
o
r Phenome
commit
|
commitdiff
|
tree
2010-11-01
Naama
Men
d
a
rep
l
ace
d
fi
n
d with create_
w
ith
for accessi
o
n c
v
term
commit
|
commitdiff
|
tree
2010-10-29
Naama Menda
a
d
ded s
t
ock_dbxre
f
prop table to db patch
.
commit
|
commitdiff
|
tree
next