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Merge pull request #15 from solgenomics/topic/add_stock_file
2023-05-26
Naama Men
d
a
Merg
e
pull reque
s
t #1
4
f
r
om solgenomics/topic/update_annot
commit
|
commitdiff
|
tree
2022-07-11
Na
a
ma Menda
f
ix file
e
xten
t
i
o
n cle
a
ning
commit
|
commitdiff
|
tree
2022-07-08
Naam
a
M
e
nda
add position to TomDel dbxrefs
commit
|
commitdiff
|
tree
2022-06-23
Naama Mend
a
get file basen
a
me
commit
|
commitdiff
|
tree
2022-06-23
Na
a
ma Menda
loader for SGN TomDel dbxrefs
commit
|
commitdiff
|
tree
2021-04-28
N
aama Menda
Merg
e
branch 'master' of https:/
/
github
.
com/
s
olg
e
nomics
.
.
.
commit
|
commitdiff
|
tree
2021-04-28
N
a
ama Mend
a
clean ph
y
lo
g
enes loader error log
commit
|
commitdiff
|
tree
2020-01-22
Naam
a
Menda
load vale
n
cia
p
ho
t
os
commit
|
commitdiff
|
tree
2018-09-21
N
aama
M
enda
Merge pull request #
1
0 fro
m
s
olgeno
m
ics
/
t
o
pic/
v
ar
i
tome_image
s
commit
|
commitdiff
|
tree
2018-09-19
Naama Menda
fix already up
l
o
ad
e
d image lo
o
kup
commit
|
commitdiff
|
tree
2018-09-19
Naama Menda
get
the correct ta
g
name
commit
|
commitdiff
|
tree
2018-09-19
Naama M
e
nda
get the
c
orrec
t
stock
n
am
e
commit
|
commitdiff
|
tree
2018-09-19
Naama Menda
c
a
ll correct tag exis
t
s functio
n
commit
|
commitdiff
|
tree
2018-09-19
Naama Menda
up
l
oad the
image when not
in test mode
commit
|
commitdiff
|
tree
2017-04-14
Naama M
e
nda
r
em
o
ve v
a
riable overloadin
g
commit
|
commitdiff
|
tree
2017-03-03
Naama Menda
parse plots c
o
rrectly
commit
|
commitdiff
|
tree
2017-02-02
Naama Me
n
da
incre
m
en
t
ing plo
t
number
s
by tri
a
l n
a
me
commit
|
commitdiff
|
tree
2017-01-30
Naama Menda
adjust p
a
ttern
ma
t
ch for replicate,
bloc
k
, plot numbers
commit
|
commitdiff
|
tree
2017-01-25
Naama
Mend
a
parse Alpha design tr
i
als
commit
|
commitdiff
|
tree
2017-01-23
Naama Menda
fix
indent for
bette
r
readab
i
lity
commit
|
commitdiff
|
tree
2017-01-23
Naama
M
enda
typo
s
commit
|
commitdiff
|
tree
2017-01-23
Na
a
m
a M
e
n
da
make
sure to fetch
only
p
lot
s
associated with
p
henotypin
g
.
.
.
commit
|
commitdiff
|
tree
2017-01-20
Naama
M
end
a
tweak pattern matching for block an
d
plot numbers
commit
|
commitdiff
|
tree
2016-02-09
Naama Me
n
da
Merge pull req
u
est #7 from solgenomics/t
o
pic/system_cvterm
s
commit
|
commitdiff
|
tree
2015-03-16
N
aam
a
Menda
ad
j
u
s
t
CIAT trials loade
r
to u
p
date
s
sent
from
H
erna
n
commit
|
commitdiff
|
tree
2015-02-27
Naama Me
n
da
ma
n
u
ally load b
u
lk l
o
cus curator annotatio
n
s
commit
|
commitdiff
|
tree
2015-02-17
Naama
M
e
nda
load
e
r
for ci
a
t cassava phenotyping data
commit
|
commitdiff
|
tree
2015-02-16
Naama Menda
add
new ciat project t
y
pes
commit
|
commitdiff
|
tree
2015-02-13
Naama
Menda
make sure
projects are n
o
t d
u
plicated
commit
|
commitdiff
|
tree
2015-02-12
Naama Menda
load
/
find breedi
n
g
program , add nd_g
e
olocation
_
id
.
.
.
commit
|
commitdiff
|
tree
2015-02-12
Naama Menda
modified loade
r
fo
r
C
I
A
T
tri
a
l da
t
a, trial types, geo
l
ocations
commit
|
commitdiff
|
tree
2014-11-18
Naama M
e
nda
func
t
ion for
f
inding the
f
eature object bas
e
d on t
h
e
.
.
.
commit
|
commitdiff
|
tree
2014-07-15
Naam
a
Menda
typo in POD
commit
|
commitdiff
|
tree
2014-07-15
Naama
M
e
nda
ty
p
o
commit
|
commitdiff
|
tree
2014-07-15
Naama Menda
loa
d
er
for
the pepper genome ge
n
e models V1
.
55
commit
|
commitdiff
|
tree
2014-06-13
Naama M
e
n
da
remove version number from
l
ocus id for creating links
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Naa
m
a Menda
correc
t
documentation for
st
o
ring terms wi
t
h a months
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
Naama Menda
fix doc
u
m
ent
a
t
io
n
for loading s
n
p files
commit
|
commitdiff
|
tree
2013-06-25
Naama
M
enda
root term for plant_anat
o
my
h
a
s
changed sinc
e
w
e last
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Menda
not a good idea to automatical
l
y update obso
l
ete terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Me
n
da
updated code for flagging
o
bsole
t
e an
n
ota
t
ions, since
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
print debugging in
f
o
when par
e
nt
s
ar
e
stored
commit
|
commitdiff
|
tree
2013-06-16
Naama Men
d
a
cleanin
g
clone nam
e
s in t
h
e
loadin
g
script
commit
|
commitdiff
|
tree
2013-06-09
Naama
M
enda
r
e
move leading
a
nd trailing sp
a
ce
s
from
a
ll
l
ocus searhc
.
.
.
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
debug inf
o
a
bout load
i
n
g of p
l
ot stocks
commit
|
commitdiff
|
tree
2013-04-13
N
a
ama Menda
add
projec
t
name a
n
d
y
ear op
t
io
n
s
commit
|
commitdiff
|
tree
2013-04-13
Na
a
ma
M
e
n
da
snp loader
c
reates now new
s
tocks
i
f
n
ot found
i
n
d
b
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
add code
f
r
o
m me
r
g
e
commit
|
commitdiff
|
tree
2013-04-12
N
a
ama Me
n
da
resolved conflict
commit
|
commitdiff
|
tree
2013-04-12
N
aama
Me
n
d
a
support f
o
r mult
i
loc
a
tion f
i
les
commit
|
commitdiff
|
tree
2013-04-07
N
aama Me
n
da
refining c
l
one name search
commit
|
commitdiff
|
tree
2013-04-07
N
a
ama Menda
s
k
ipping no
n
-numeric values
commit
|
commitdiff
|
tree
2013-04-07
Naama
M
en
d
a
change
s
ur
v
iving plants column he
a
der
commit
|
commitdiff
|
tree
2013-04-06
Naam
a
Menda
loader
based on NRCR
I
data
.
Sh
o
uld work with other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Naa
m
a
Mend
a
typo
commit
|
commitdiff
|
tree
2013-04-06
Naa
m
a Menda
merged
c
h
ange
s
commit
|
commitdiff
|
tree
2013-04-06
Naama Mend
a
loader
f
o
r cassav
a
p
roject
s
and th
e
ir
m
etadata
commit
|
commitdiff
|
tree
2013-03-30
Naama Menda
loader for c
a
ssava
clones an
d
sy
n
onyms
commit
|
commitdiff
|
tree
2013-03-28
N
a
ama Mend
a
refin
e
d optio
n
s for loa
d
ing sol
c
ap d
a
t
a
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
print sh
o
rter mini-r
e
f
commit
|
commitdiff
|
tree
2012-11-29
Na
a
ma
Me
n
da
r
eferenc
e
_id in l
o
cus
g
r
oup_member is a dbxref
commit
|
commitdiff
|
tree
2012-11-28
Naama Me
n
da
cxgn members returns
a
dat
a
st
r
ucture with the locus
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
functi
o
n
f
or returning the second level ob
j
ect of locusgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama
M
e
nda
option for passing locusgroup_name as an a
r
g for checking
.
.
.
commit
|
commitdiff
|
tree
2012-11-05
Naama M
e
nda
tg
r
c w
i
ld accessions
commit
|
commitdiff
|
tree
2012-11-05
Naama
M
end
a
l
oader for tgrc wild
access
i
ons
commit
|
commitdiff
|
tree
2012-11-04
Naama Menda
cassava and
barley loade
r
s
commit
|
commitdiff
|
tree
2012-11-03
N
a
ama Menda
Mer
g
e
bran
c
h 'm
a
ster' of g
i
thub
.
co
m
:
solgenomics/Phenome
commit
|
commitdiff
|
tree
2012-11-03
N
aama Menda
correct tab-delim
i
ted format
commit
|
commitdiff
|
tree
2012-10-31
Naama
Me
n
da
population should b
e
for
mutatns
commit
|
commitdiff
|
tree
2012-10-31
Naama Mend
a
loader
f
or the Tsukub
a
mutan
t
s
commit
|
commitdiff
|
tree
2012-10-04
N
a
ama Menda
tweak scale cvtermp
r
o
p
l
oading s
c
ri
p
t
commit
|
commitdiff
|
tree
2012-05-02
Naama Menda
add updating
of genom
e
locus identifier
,
des
c
rip
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Naama Menda
add
a user name opt
i
o
n
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
typo
commit
|
commitdiff
|
tree
2012-04-18
Naama M
e
nda
added
a
ch
e
ck f
o
r
s
tock_owner row
commit
|
commitdiff
|
tree
2012-04-17
Naama
M
end
a
cor
r
ecte
d
loader
f
or cassa
v
a
ph
e
notypin
g
proje
c
ts
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
c
orr
e
cted loader for c
a
s
sa
v
a phen
o
typing
p
rojects
commit
|
commitdiff
|
tree
2012-03-15
Naama
M
enda
e
r
ror
i
n fetc
h
ing dbxref accession for
a pub obj
e
ct
commit
|
commitdiff
|
tree
2012-03-15
N
a
a
ma Men
d
a
modified ontology associat
i
on script t
o
w
o
rk with stocks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
N
aama Mend
a
updated dump s
c
ript
.
Make this a cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
N
a
ama Menda
removing ver
s
ion num
b
ers
from Solyc gene id
s
commit
|
commitdiff
|
tree
2012-01-09
N
a
ama Menda
moved the g
e
notype json to
genoty
e
pprop
commit
|
commitdiff
|
tree
2012-01-06
Naama Menda
script for
re
l
oadi
n
g the solcap snp positions as
d
esignat
e
d
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Naama Menda
loa
d
er
for s
o
lcap Infinium array snp genotypes
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
f
ixed typos
commit
|
commitdiff
|
tree
2011-12-18
Na
a
ma Menda
loader f
o
r t
h
e
cassava ph
e
notypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
silly
t
y
p
o
commit
|
commitdiff
|
tree
2011-12-16
Naam
a
Men
d
a
p
o
lishing
s
cript for inserting/updating potato loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
N
a
ama
M
enda
loa
d
e
r
for the p
o
tato genome
loci
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
printin
g
t
o a large sequen
c
e file
commit
|
commitdiff
|
tree
2011-12-14
Naama Me
n
da
fixed
f
e
t
chin
g
o
f Solyc mrna
s
equences
commit
|
commitdiff
|
tree
2011-12-14
Naama Men
d
a
adding itag mrna sequences to loci
b
l
ast db
commit
|
commitdiff
|
tree
2011-11-23
N
a
ama Menda
fixed cvterm na
m
e f
o
r plot and mem
b
er s
t
ock rela
t
io
n
ship
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
N
a
ama Menda
c
a
pitalizing Qua
l
i
t
y
t
e
rm
commit
|
commitdiff
|
tree
2011-11-22
Na
a
m
a
Menda
r
efining add_unigene met
h
o
d
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
Merge branch 'master' into t
o
pic
/
l
o
c
us_controlle
r
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
mi
s
sing bin
d
va
l
ue
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
ad
d
ed
l
ocus
f
i
eld to
t
he search
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
adding
d
iscon
n
ec
t
for d
b
h
w
i
t
hout autocom
m
it
commit
|
commitdiff
|
tree
next