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fixed typos
2011-12-20
Na
a
ma M
e
n
da
f
ixed typo
s
commit
|
commitdiff
|
tree
2011-12-18
Naama Menda
loader for
the cassava phenot
y
pes
commit
|
commitdiff
|
tree
2011-12-17
Naama
Menda
silly
t
ypo
commit
|
commitdiff
|
tree
2011-12-16
Naama
M
enda
polishing script for inserting/updating potat
o
loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Menda
lo
a
d
e
r fo
r
the pota
t
o genome
loci
commit
|
commitdiff
|
tree
2011-12-15
Na
a
ma Menda
printing to a large sequence file
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
fi
x
ed fetching of Solyc
mrna s
e
qu
e
n
ces
commit
|
commitdiff
|
tree
2011-12-14
Naama M
e
nda
adding
i
tag mrna seq
u
enc
e
s to loc
i
blast db
commit
|
commitdiff
|
tree
2011-11-23
Naama
Menda
fixed cvterm name for
p
lot
a
n
d member s
t
ock relationsh
i
p
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
N
a
ama
M
e
nda
capitali
z
ing Quality term
commit
|
commitdiff
|
tree
2011-11-22
N
aama Menda
refining add_
u
nigen
e
method
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
M
e
r
g
e
branch 'master' into topi
c
/l
o
cus
_
c
ontroller
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
m
i
ss
i
ng bi
n
d value
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
added locu
s
fiel
d
to the search
commit
|
commitdiff
|
tree
2011-11-15
N
a
ama
Me
n
da
a
ddin
g
d
is
c
onnect for dbh without a
u
t
ocommit
commit
|
commitdiff
|
tree
2011-11-08
Naama Menda
update DBIx::Class phen
o
me
schema classes
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
Merge
bra
n
ch 'master' i
n
to to
p
ic
/
locus_controlle
r
commit
|
commitdiff
|
tree
2011-11-07
Naama Mend
a
res
o
lved conflict
commit
|
commitdiff
|
tree
2011-11-07
Naama Me
n
da
a
d
ded ac
c
e
s
s
or
s
for genome_lo
c
us n
a
me f
i
eld
commit
|
commitdiff
|
tree
2011-11-09
Naa
m
a Menda
disa
b
ling aut
o
commit
commit
|
commitdiff
|
tree
2011-11-07
Naama
Mend
a
p
atch for adding a locus field to the
l
ocus table
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Menda
adding phe
n
otype props to solcap phenotypes
commit
|
commitdiff
|
tree
2011-10-30
Naama
Men
d
a
using dbc->dbh instead of C
X
GM
:
:DB::Co
n
nection
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
obsoleti
n
g
locus ali
a
s if t
h
e ITAG id is ju
s
t
t
he
alias
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
script
f
or obsolet
i
ng ITAG
loci from
p
heno
m
e
.
l
o
cus
commit
|
commitdiff
|
tree
2011-10-15
Naama Mend
a
removing
t
railing spaces from unit name
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
remo
v
ing
t
railing spacesfromunit nam
e
commit
|
commitdiff
|
tree
2011-10-14
N
aama Mend
a
fixi
n
g
bug
in merge_locus fu
n
c
tion
w
hen merge
d
lo
c
us
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
making sure pl
a
nt hait terms are found
commit
|
commitdiff
|
tree
2011-10-12
N
a
ama Menda
l
ooking at direct child terms
for qualitative terms
commit
|
commitdiff
|
tree
2011-10-11
Naama Men
d
a
loadi
n
g
q
ualita
t
ive terms co
r
rectl
y
commit
|
commitdiff
|
tree
2011-10-11
Naama Menda
adding unit ontology cvterms t
o
the
phenotye
p
s
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
j
ust wa
r
ning if p
a
rent stock
is
not
found
commit
|
commitdiff
|
tree
2011-10-03
Naam
a
Menda
ty
p
o
commit
|
commitdiff
|
tree
2011-10-03
Naa
m
a
Menda
pa
r
sing more option
s
for
s
olcap image file
s
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
find t
h
e
y
e
ar
o
f the
proe
c
t from the
metad
a
t
a file
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
ye
a
r should
b
e
a
property
of
the project
commit
|
commitdiff
|
tree
2011-10-02
Naama
M
enda
s
e
arc
g
is bett
e
r
t
han find here
commit
|
commitdiff
|
tree
2011-09-27
N
a
am
a
Men
d
a
typo
commit
|
commitdiff
|
tree
2011-09-27
Naama Me
n
da
skip
p
ing for
non-existing
p
l
ots
commit
|
commitdiff
|
tree
2011-09-27
Naama Me
n
da
ch
e
cking cor
r
ectly i
f
an i
m
age i
s
l
oad
e
d
a
nd if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
N
aama
Me
n
da
typo
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
better printing of error
messag
e
s
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
ad
d
ed a c
h
eck
for existing stock
-
im
a
ge links
commit
|
commitdiff
|
tree
2011-09-23
Na
a
ma Mend
a
l
a
st typ
o
?
commit
|
commitdiff
|
tree
2011-09-23
Naama Mend
a
typo
commit
|
commitdiff
|
tree
2011-09-23
Naama M
e
nda
typo
commit
|
commitdiff
|
tree
2011-09-23
Naam
a
Men
d
a
ad
d
ed exce
p
tion
f
or planting date property
commit
|
commitdiff
|
tree
2011-09-23
Naa
m
a Menda
added ye
a
r o
p
t
ion f
o
r
f
i
n
di
n
g unique plo
t
name
s
commit
|
commitdiff
|
tree
2011-09-18
Naama Mend
a
setting the transaction
properly
commit
|
commitdiff
|
tree
2011-09-18
Na
a
ma Menda
check
i
ng if a sy
n
on
y
m value was alre
a
d
y loaded
commit
|
commitdiff
|
tree
2011-09-17
N
a
ama Mend
a
loader
f
or solcap i
m
ages
commit
|
commitdiff
|
tree
2011-09-17
N
aama Mend
a
using txn_do f
o
r t
h
e
transac
t
i
o
n
commit
|
commitdiff
|
tree
2011-09-16
Naa
m
a Menda
modifie
d
op
t
ions for lo
a
ding sol
c
ap TA da
t
a
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
a
d
de
d
pars
i
ng of qualitative tr
a
its into t
h
e toma
t
o
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naa
m
a Menda
fixed loadin
g
stock ow
n
er into the right place
commit
|
commitdiff
|
tree
2011-09-14
Naam
a
M
enda
no
n
eed to clone
t
he
dbh
commit
|
commitdiff
|
tree
2011-09-14
Naama Mend
a
added missing
p
heno
m
e DBIC cl
a
sses
commit
|
commitdiff
|
tree
2011-09-14
N
a
ama Me
n
da
u
sing CXGN::Phenome:
:
Sche
m
a for chec
k
ing
/
insert
i
ng
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
N
a
ama Menda
remo
v
ed outda
t
ed loading script
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
u
pdated scrip
t
for loading
s
olcap a
c
ce
s
sions
commit
|
commitdiff
|
tree
2011-09-14
N
a
am
a
Me
n
d
a
u
pdated CXGN::Phenome
:
:Schema classes
commit
|
commitdiff
|
tree
2011-09-13
Naama Me
n
d
a
t
ypo
commit
|
commitdiff
|
tree
2011-09-04
N
aama Menda
lo
a
ding script for SolC
A
P potato image
s
commit
|
commitdiff
|
tree
2011-09-02
Naama Me
n
da
lo
d
e
r for im
a
ges from Sandy Knapp
commit
|
commitdiff
|
tree
2011-08-31
Na
a
ma Menda
adding date prop to experiments
commit
|
commitdiff
|
tree
2011-08-28
Naama Menda
loa
d
ing script
f
or potato
solcap data
.
H
o
pefully next
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama Menda
l
oader f
o
r TAI
R
loci
commit
|
commitdiff
|
tree
2011-06-19
Naama M
e
nda
updated solcap
stuff
for re
l
o
a
ding the potato
2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
Naama Menda
patch for changes in C
h
ad
o
ND sc
h
ema
commit
|
commitdiff
|
tree
2011-04-22
N
aama Men
d
a
db
p
atch for granting delete on metadata to web_usr
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Naama Menda
updated D
B
I
x cl
a
sse
s
, no
m
o
r
e
phenome
.
phenotype table
commit
|
commitdiff
|
tree
2011-04-18
N
a
ama Menda
sk
i
pping
m
e
t
adata insert
i
f one of the FKs i
s
n
u
ll
commit
|
commitdiff
|
tree
2011-04-17
Naama Menda
adding web_usr
p
ermission
s
to metadata tabl
e
commit
|
commitdiff
|
tree
2011-04-17
Naama Men
d
a
typo in q
u
ery
commit
|
commitdiff
|
tree
2011-04-17
N
a
ama Menda
forg
o
t to add web
_
usr permi
s
sions
commit
|
commitdiff
|
tree
2011-04-17
Naama
Menda
using stock_allele and stock_image instea
d
of stockpr
o
p
commit
|
commitdiff
|
tree
2011-04-16
Naama Menda
db patch for migrating stock image,
a
llele, and owner
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama Menda
refacto
r
ing functions that u
s
e individuals
.
No
w
we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
typos
commit
|
commitdiff
|
tree
2011-04-01
N
aama Menda
dele
t
ing fi
r
st existing allele link
s
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
db p
a
tch for correctl
y
stori
n
g
a
l
l a
l
l
e
l
e
s
l
inked with
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Men
d
a
se
l
ecting all allele
s
, inclu
d
i
ng defau
l
ts ones
commit
|
commitdiff
|
tree
2011-04-01
Naama Me
n
da
rem
o
ved
searching loci by stock phenotypes
.
T
o
d
o t
h
is
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
N
a
ama M
e
nda
added an opti
o
n to pa
s
s
the i
m
age_path
.
th
i
s lets run
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
N
a
am
a
Menda
forgot to
allow dup
l
icate
v
alues
.
W
ithout this multiple
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
enda
polished load
i
ng s
c
r
i
pt
for lycotill i
m
ages
commit
|
commitdiff
|
tree
2011-03-28
Naama Men
d
a
lo
a
ding script fo
r
lycotill accessions
commit
|
commitdiff
|
tree
2011-03-23
Naama Menda
dbpatch for
fixing loc
u
s_
m
arker FK
commit
|
commitdiff
|
tree
2011-03-22
N
a
ama M
e
nda
added an
i
nterim function for getting population
o
bject
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
N
aama Me
n
da
d
b patch
for movin
g
stock ann
o
tations from sto
c
k_dbxref
.
.
.
commit
|
commitdiff
|
tree
2011-03-10
Na
a
m
a
Menda
a
dded missing depende
n
cy
to db pathc
commit
|
commitdiff
|
tree
2011-03-09
Naama
M
enda
s
i
lly typo in dbp
a
tch
commit
|
commitdiff
|
tree
2011-03-09
Naam
a
Menda
db p
a
tch for
t
h
e missing l
i
n
k
to st
o
ck_
i
d from the
.
.
.
commit
|
commitdiff
|
tree
2011-03-04
N
aam
a
Me
n
da
s
i
lly typo
commit
|
commitdiff
|
tree
2011-03-03
Naama Mend
a
fixed l
o
ading
ex
p
eriment ids for e
a
c
h
s
t
ock phe
n
otyped
commit
|
commitdiff
|
tree
2011-02-07
Naama Menda
db p
a
th for adding unde
f
opt
i
on
t
o
allele mode_o
f
_inheritanc
.
.
.
commit
|
commitdiff
|
tree
2010-12-08
Naama Menda
filtering obsolete
l
o
ci and n
o
n-current
u
nigen
e
s
commit
|
commitdiff
|
tree
2010-12-01
N
a
ama Menda
p
a
tch for updating the unique cons
t
r
a
int on nd_exper
i
ment_ph
.
.
.
commit
|
commitdiff
|
tree
2010-11-24
N
a
ama Menda
u
pd
a
ting chro
m
osom
e
numb
e
r fo
r
loci with it
a
g matches
commit
|
commitdiff
|
tree
next