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corrected loader for cassava phenotyping projects
2012-04-17
Naam
a
Menda
corrected loa
d
er fo
r
c
a
ssava pheno
t
y
p
ing
project
s
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corrected loader f
o
r cas
s
ava phenotyp
i
n
g projects
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
error in
f
etching dbxref a
c
ce
s
sion for a p
u
b ob
j
ect
commit
|
commitdiff
|
tree
2012-03-15
Naama
M
e
n
da
modi
f
ied ont
o
log
y
assoc
i
ation scri
p
t
to work wit
h
stocks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naama Menda
u
pdated dump scri
p
t
.
Make this a cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
Naama
Menda
removing version
nu
m
bers f
r
o
m
Solyc gen
e
i
ds
commit
|
commitdiff
|
tree
2012-01-09
N
a
a
ma Menda
mo
v
ed the
genotype
j
so
n
to genotyepprop
commit
|
commitdiff
|
tree
2012-01-06
N
aama Menda
script for
r
eloa
d
i
n
g the
sol
c
ap s
n
p positi
o
ns as designated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
Na
a
ma Menda
load
e
r f
o
r
s
olcap
I
n
finium array snp genotypes
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
fix
e
d typos
commit
|
commitdiff
|
tree
2011-12-18
Naama Menda
loader for the c
a
ssava phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
s
i
lly typo
commit
|
commitdiff
|
tree
2011-12-16
Naama Menda
poli
s
hing script fo
r
inserting/updat
i
ng potato loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
N
aa
m
a
M
enda
loade
r
for
t
he
potato genome loci
commit
|
commitdiff
|
tree
2011-12-15
Naama M
e
nda
pr
i
nting to a large seque
n
ce file
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
fixed fetchin
g
of Solyc mrna sequenc
e
s
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
a
d
ding it
a
g mr
n
a s
e
quenc
e
s to
l
o
ci blast db
commit
|
commitdiff
|
tree
2011-11-23
Naama
Menda
fixed cvter
m
na
m
e for plot and member
stock
r
e
lati
o
n
s
h
ip
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
N
aama
M
enda
cap
i
tal
i
z
i
ng Quality term
commit
|
commitdiff
|
tree
2011-11-22
Na
a
m
a
Mend
a
refining add_unig
e
ne method
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
Merge br
a
nch 'm
a
s
ter' into topic/locus_c
o
ntroll
e
r
commit
|
commitdiff
|
tree
2011-11-16
Naama M
e
nda
missing
bind value
commit
|
commitdiff
|
tree
2011-11-15
Naama M
e
n
d
a
a
dded locus
field to the search
commit
|
commitdiff
|
tree
2011-11-15
N
a
a
m
a
Menda
adding d
i
sconnect
for d
b
h wi
t
hout au
t
ocomm
i
t
commit
|
commitdiff
|
tree
2011-11-08
Naama Me
n
da
upda
t
e DBI
x
::Class p
h
eno
m
e
sch
e
ma cl
a
s
s
es
commit
|
commitdiff
|
tree
2011-11-07
N
aama Menda
M
e
rg
e
branch
'
ma
s
ter
'
into
t
op
i
c/locus_controll
e
r
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
resolved co
n
flic
t
commit
|
commitdiff
|
tree
2011-11-07
N
aa
m
a Menda
added acces
s
ors for ge
n
ome_locus name field
commit
|
commitdiff
|
tree
2011-11-09
Naama Me
n
da
disabling
a
utoco
m
mit
commit
|
commitdiff
|
tree
2011-11-07
N
aama Menda
pat
c
h
for addi
n
g a locu
s
field
t
o th
e
l
ocu
s
tab
l
e
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Me
n
da
adding phenotype pr
o
ps
t
o
solcap
p
henotype
s
commit
|
commitdiff
|
tree
2011-10-30
Naama Menda
using dbc->
d
bh instead of CX
G
M
::D
B
:
:
Connection
commit
|
commitdiff
|
tree
2011-10-15
N
aama M
e
nda
obsoleting locus alias if the
I
TAG id is
ju
s
t the alias
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
s
c
ript for
o
b
s
oleting I
T
AG loci f
r
om phenome
.
l
ocus
commit
|
commitdiff
|
tree
2011-10-15
Naama Mend
a
removing
t
rail
i
ng
s
paces from uni
t
name
commit
|
commitdiff
|
tree
2011-10-15
Naama Me
n
da
re
m
oving trailing spacesfromunit
na
m
e
commit
|
commitdiff
|
tree
2011-10-14
Naama
Men
d
a
fi
x
i
n
g bug in
m
erg
e
_locus functio
n
when merge
d
locus
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Na
a
ma Menda
m
a
k
ing sure plant hait ter
m
s are f
o
u
n
d
commit
|
commitdiff
|
tree
2011-10-12
N
aama Mend
a
looking at direct chil
d
terms for qualit
a
tive terms
commit
|
commitdiff
|
tree
2011-10-11
Naama Men
d
a
loadin
g
qualitative ter
m
s
c
o
rrectly
commit
|
commitdiff
|
tree
2011-10-11
Na
a
ma
M
enda
adding unit onto
l
o
g
y
cvterms to the phenotyep
s
commit
|
commitdiff
|
tree
2011-10-03
Naam
a
Menda
just warning if pare
n
t stock is not fou
n
d
commit
|
commitdiff
|
tree
2011-10-03
Naama
M
e
n
d
a
typo
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
pa
r
sing more opt
i
o
ns for sol
c
ap image
f
i
l
es
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
find the year of t
h
e proe
c
t
f
rom the metad
a
ta
file
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
year
s
hould be a propert
y
o
f
the projec
t
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
searc
g
is be
t
ter than fin
d
h
ere
commit
|
commitdiff
|
tree
2011-09-27
Naama
Men
d
a
t
ypo
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama Men
d
a
skipping f
o
r n
o
n
-
existing plots
commit
|
commitdiff
|
tree
2011-09-27
Naama Men
d
a
check
i
ng correctly if an i
m
age is loaded and if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
t
y
po
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
better pri
n
ting of error messa
g
es
commit
|
commitdiff
|
tree
2011-09-27
Naam
a
Me
n
da
ad
d
ed a
ch
e
c
k for existing st
o
ck-ima
g
e links
commit
|
commitdiff
|
tree
2011-09-23
Naama Men
d
a
last typo?
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-23
Naa
m
a Me
n
da
typo
commit
|
commitdiff
|
tree
2011-09-23
Na
a
ma Menda
ad
d
ed e
x
cept
i
on for plantin
g
date
property
commit
|
commitdiff
|
tree
2011-09-23
N
aama Menda
added year option f
o
r finding unique
p
lot
names
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
setting the
tran
s
ac
t
ion properly
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
checking
i
f
a synonym value was al
r
eady
l
oa
d
ed
commit
|
commitdiff
|
tree
2011-09-17
Naama Menda
loader
for solcap
i
mages
commit
|
commitdiff
|
tree
2011-09-17
N
aama
M
enda
using txn
_
d
o
for the
t
ransact
i
o
n
commit
|
commitdiff
|
tree
2011-09-16
Naa
m
a Menda
modified optio
n
s
for l
o
a
ding solcap TA data
commit
|
commitdiff
|
tree
2011-09-16
Naama
Me
n
da
added parsing of qual
i
tative tra
i
ts in
t
o
th
e
t
omat
o
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naam
a
Mend
a
fixed loading st
o
ck o
w
ner i
n
to
th
e
right place
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
no need
to clone the dbh
commit
|
commitdiff
|
tree
2011-09-14
Naama
M
enda
adde
d
missing
p
hen
o
me DBIC classes
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
using CX
G
N::Phenome::Sc
h
ema for
c
hec
k
ing/inserting
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
r
emove
d
o
utdated loading s
c
r
ipt
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
updated s
c
ript for l
o
ading
solcap
a
ccession
s
commit
|
commitdiff
|
tree
2011-09-14
Naama Menda
u
pda
t
e
d
CXGN::Phenome::Schema
c
lasses
commit
|
commitdiff
|
tree
2011-09-13
Naama Men
d
a
ty
p
o
commit
|
commitdiff
|
tree
2011-09-04
Naama Me
n
da
loading script for
SolCAP potat
o
images
commit
|
commitdiff
|
tree
2011-09-02
Naam
a
Menda
loder for
i
mages f
r
om
S
andy Knapp
commit
|
commitdiff
|
tree
2011-08-31
Naama M
e
nda
a
dding date prop
t
o experiments
commit
|
commitdiff
|
tree
2011-08-28
N
a
a
ma Menda
loading sc
r
ipt for potato solcap
d
ata
.
Hopeful
l
y
n
ext
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama
M
enda
l
o
ad
e
r for TAIR
loci
commit
|
commitdiff
|
tree
2011-06-19
Naam
a
Menda
up
d
ated
s
olcap
s
tuff for reloading the
p
otato 2009
.
.
.
commit
|
commitdiff
|
tree
2011-05-09
N
aama Menda
patch for changes in Chad
o
ND schema
commit
|
commitdiff
|
tree
2011-04-22
Naama
M
enda
db pa
t
ch
f
or
g
ranting
d
elet
e
on meta
d
ata to we
b
_usr
.
.
.
commit
|
commitdiff
|
tree
2011-04-21
Naama Me
n
da
updated DBIx c
l
a
sse
s
,
n
o more
p
henome
.
phe
n
ot
y
pe
table
commit
|
commitdiff
|
tree
2011-04-18
Naama Menda
s
k
ippi
n
g meta
d
ata
i
ns
e
r
t
i
f
one of the FKs is null
commit
|
commitdiff
|
tree
2011-04-17
Na
a
ma Menda
adding web_usr permissions to meta
d
ata
table
commit
|
commitdiff
|
tree
2011-04-17
Naama
Menda
t
ypo
i
n query
commit
|
commitdiff
|
tree
2011-04-17
Naama Mend
a
forgot to
a
dd web_usr permiss
i
ons
commit
|
commitdiff
|
tree
2011-04-17
N
aama M
e
nda
us
i
ng stock_allele and stoc
k
_image instead of stockprop
commit
|
commitdiff
|
tree
2011-04-16
Na
a
ma Menda
db patch f
o
r migrati
n
g
s
tock image, allele, and own
e
r
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
N
a
ama
Me
n
da
r
e
factoring f
u
nctions that u
s
e individua
l
s
.
Now
we
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
enda
typos
commit
|
commitdiff
|
tree
2011-04-01
Naama
M
enda
deleting first e
x
i
s
ting
a
llele links
commit
|
commitdiff
|
tree
2011-04-01
Naam
a
Menda
db patch for correct
l
y storing all alleles linked w
i
t
h
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
N
aama Men
d
a
s
e
lecting a
l
l allel
e
s, including de
f
a
u
l
t
s one
s
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
removed se
a
rchi
n
g lo
c
i by
stoc
k
phenotypes
.
To d
o
this
.
.
.
commit
|
commitdiff
|
tree
2011-04-02
Naama
Mend
a
ad
d
ed
a
n option to
pass
the image_path
.
thi
s
lets run
.
.
.
commit
|
commitdiff
|
tree
2011-03-29
Naam
a
Menda
forgot
t
o all
o
w
duplicate valu
e
s
.
Without this multiple
.
.
.
commit
|
commitdiff
|
tree
2011-04-01
Naama Menda
polished loading scrip
t
for
lyc
o
t
ill im
a
ges
commit
|
commitdiff
|
tree
2011-03-28
Naama M
e
nda
load
i
ng script
f
o
r l
y
cotill accessio
n
s
commit
|
commitdiff
|
tree
2011-03-23
Naama
M
enda
dbpatch f
o
r fixing locus_
m
arker FK
commit
|
commitdiff
|
tree
2011-03-22
Naama Menda
a
dded an i
n
terim fun
c
tion for getting
p
opulation object
.
.
.
commit
|
commitdiff
|
tree
2011-03-17
Naama Menda
d
b
patch
for
moving s
t
ock annotations from stock_d
b
xref
.
.
.
commit
|
commitdiff
|
tree
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