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function for finding the feature object based on the genome locus name #142
2014-11-18
Naam
a
Me
n
da
function for
findi
n
g the f
e
at
u
re ob
j
ect
based on t
h
e
.
.
.
commit
|
commitdiff
|
tree
2014-07-15
N
aama Menda
typo in POD
commit
|
commitdiff
|
tree
2014-07-15
Naam
a
Me
n
da
t
y
po
commit
|
commitdiff
|
tree
2014-07-15
Na
a
ma M
e
nda
l
o
ade
r
for t
h
e
pepper ge
n
o
me gene models V1
.
55
commit
|
commitdiff
|
tree
2014-06-13
Naama
M
enda
r
emo
v
e version num
b
er
f
rom locus id for
c
reating links
.
.
.
commit
|
commitdiff
|
tree
2014-03-14
Naama Menda
correct documentation for stori
n
g terms with a
m
onths
.
.
.
commit
|
commitdiff
|
tree
2014-01-21
N
a
ama Menda
fi
x
documentatio
n
for
l
oading snp files
commit
|
commitdiff
|
tree
2013-07-18
nmenda
ex
c
lude obsolete annotations by lo
o
k
ing at locus_db
x
ref_evid
e
nc
e
commit
|
commitdiff
|
tree
2013-07-17
nmenda
refine error me
s
s
a
ges
commit
|
commitdiff
|
tree
2013-06-25
Na
a
ma Menda
r
oot ter
m
for pla
n
t
_
anatomy
has ch
a
nged since we last
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Menda
not a good idea to aut
o
matically u
p
dat
e
obs
o
le
t
e
terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naam
a
Menda
updated
c
o
de fo
r
flagging obsolete annotati
o
ns, since
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naama
M
enda
print debugging info
wh
e
n
p
arents are stored
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
c
l
eaning
c
l
one names in t
h
e loading script
commit
|
commitdiff
|
tree
2013-06-14
nm
e
nda
fix fo
r
stocks with a back
s
las
h
in their name
commit
|
commitdiff
|
tree
2013-06-14
nmenda
chang
e
male/f
e
male parents to be the su
b
jects , to
.
.
.
commit
|
commitdiff
|
tree
2013-06-09
Naama Menda
remove leadi
n
g and t
r
a
i
ling spaces fr
o
m a
l
l locu
s
sear
h
c
.
.
.
commit
|
commitdiff
|
tree
2013-05-13
n
m
e
nda
add plot n
a
me to stock u
n
ique
n
ame
commit
|
commitdiff
|
tree
2013-05-07
nmen
d
a
typo
commit
|
commitdiff
|
tree
2013-05-07
nmenda
fixed u
p
da
t
e query for stock_relati
o
nship when merging
.
.
.
commit
|
commitdiff
|
tree
2013-04-25
n
menda
add year proje
c
tprop
f
or m
u
ltilocation fil
e
s
commit
|
commitdiff
|
tree
2013-04-13
Naama Men
d
a
d
e
b
u
g
info about l
o
adin
g
of plot stocks
commit
|
commitdiff
|
tree
2013-04-13
Naama Men
d
a
a
dd
p
roject name a
n
d y
e
a
r
optio
n
s
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
snp l
o
a
der create
s
n
o
w ne
w
stocks if not
f
ound in db
commit
|
commitdiff
|
tree
2013-04-12
Naam
a
M
e
nda
add
co
d
e f
r
om merge
commit
|
commitdiff
|
tree
2013-04-12
Naama Mend
a
resol
v
ed conflict
commit
|
commitdiff
|
tree
2013-04-19
n
m
enda
a
d
d
m
o
re props
to phenot
y
pe data
commit
|
commitdiff
|
tree
2013-04-18
nme
n
da
fix
search
query
commit
|
commitdiff
|
tree
2013-04-12
N
aama Menda
support
f
o
r
m
u
ltilocatio
n
fil
e
s
commit
|
commitdiff
|
tree
2013-04-07
Naama
M
enda
refining
c
lone name
search
commit
|
commitdiff
|
tree
2013-04-07
Naama M
e
n
da
skipping non
-
numer
i
c value
s
commit
|
commitdiff
|
tree
2013-04-07
Naama Menda
change s
u
rv
i
ving p
l
ants colum
n
h
e
a
d
er
commit
|
commitdiff
|
tree
2013-04-17
nmenda
fixe
d
err
o
rs
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
loader
b
ased on
N
R
CRI da
t
a
.
Should work with
other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Na
a
ma M
e
nda
typo
commit
|
commitdiff
|
tree
2013-04-06
Na
a
ma Menda
merg
e
d changes
commit
|
commitdiff
|
tree
2013-04-06
Naam
a
M
e
nda
loader fo
r
cassava p
r
ojec
t
s
and
th
e
ir me
t
adata
commit
|
commitdiff
|
tree
2013-04-08
nmenda
cassava clone loade
r
finis
h
ed
commit
|
commitdiff
|
tree
2013-04-08
nmen
d
a
force
u
sing pr
o
vided
m
ark
e
r name withou
t
c
leani
n
g
commit
|
commitdiff
|
tree
2013-03-30
Naama Menda
loa
d
e
r
for cassava c
l
o
nes
a
n
d
syno
n
yms
commit
|
commitdiff
|
tree
2013-03-28
N
a
ama Menda
refined options for loading solcap data
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
pr
i
nt shorter mini-ref
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
reference_
i
d in locusgroup_member is a dbxr
e
f
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
cxgn me
m
bers re
t
urns a data s
t
r
ucture wit
h
th
e
locus
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Mend
a
function for re
t
urning the second le
v
el object o
f
l
o
cusgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama
Menda
option
for pass
i
ng
l
ocusgroup
_
name as an arg for check
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-11-08
n
m
enda
fix
c
apitalization
commit
|
commitdiff
|
tree
2012-11-05
N
aama Menda
tgrc wild ac
c
essions
commit
|
commitdiff
|
tree
2012-11-05
Naam
a
Menda
loade
r
for
tgrc wild accessions
commit
|
commitdiff
|
tree
2012-11-06
nmen
d
a
c
o
rrect
n
umeric ch
r
o
mosom
e
number
commit
|
commitdiff
|
tree
2012-11-06
n
m
enda
loader f
o
r upd
a
t
i
n
g unigenes linked to loci
b
as
e
d on
.
.
.
commit
|
commitdiff
|
tree
2012-11-06
nme
n
da
option to rea
d
file n
a
m
e
s
f
r
om spre
a
d
s
heet
commit
|
commitdiff
|
tree
2012-11-06
nmenda
filter obsolete loci when
fetching
b
y
g
en
o
m
e
_
l
ocus id
commit
|
commitdiff
|
tree
2012-11-04
Naama Menda
cassava and
barley l
o
aders
commit
|
commitdiff
|
tree
2012-11-03
N
a
ama Menda
Mer
g
e br
a
n
c
h
'maste
r
'
o
f gi
t
hu
b
.
com:solge
n
omics/Phenome
commit
|
commitdiff
|
tree
2012-11-03
Naama Menda
c
o
r
rect tab-delimited f
o
r
mat
commit
|
commitdiff
|
tree
2012-11-01
n
m
enda
c
orrect username
f
or To
m
atoma db
commit
|
commitdiff
|
tree
2012-10-31
N
a
ama
M
end
a
po
p
ulation should be for muta
t
ns
commit
|
commitdiff
|
tree
2012-10-31
Naama Menda
loader for the Tsuk
u
ba muta
n
ts
commit
|
commitdiff
|
tree
2012-10-04
Naama Menda
t
w
ea
k
sc
a
le
c
vtermprop
loadin
g
script
commit
|
commitdiff
|
tree
2012-07-19
nmenda
typo
commit
|
commitdiff
|
tree
2012-07-19
nme
n
da
load
e
r fo
r
cassa
v
a SNP data
commit
|
commitdiff
|
tree
2012-05-02
Naama Mend
a
add updating of geno
m
e locus identifier,
d
escriptio
n
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Naama Me
n
da
add a user name option
commit
|
commitdiff
|
tree
2012-04-18
N
a
ama
M
enda
typo
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
added a
c
heck for stock_own
e
r r
o
w
commit
|
commitdiff
|
tree
2012-04-17
N
a
a
m
a Menda
corrected loader f
o
r
c
a
ssava p
h
en
o
typing projects
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
cor
r
ected loader
for cassava ph
e
notypi
n
g projects
commit
|
commitdiff
|
tree
2012-03-15
Naama Me
n
da
error in fetch
i
n
g dbxref
accessio
n
for a pub ob
j
ect
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
m
odified o
n
t
o
lo
g
y a
s
sociation script to
work with stocks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naama Menda
updated dump script
.
M
a
ke th
i
s a
cron job
.
.
commit
|
commitdiff
|
tree
2012-01-11
Naama
Menda
r
e
movin
g
v
e
rsion
n
umbers from Solyc gene ids
commit
|
commitdiff
|
tree
2012-01-09
Naa
m
a Menda
mo
v
ed the gen
o
type
js
o
n to genotyepprop
commit
|
commitdiff
|
tree
2012-01-06
Naam
a
Menda
s
c
ri
p
t for reloadin
g
the solcap s
n
p position
s
as designat
e
d
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
N
a
ama Men
d
a
lo
a
der fo
r
solcap Infin
i
um arra
y
snp g
e
n
ot
y
pes
commit
|
commitdiff
|
tree
2011-12-20
Naama Menda
fixe
d
typos
commit
|
commitdiff
|
tree
2011-12-18
Naa
m
a Mend
a
loader for the c
a
ssava phenot
y
pe
s
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
sil
l
y
t
y
p
o
commit
|
commitdiff
|
tree
2011-12-16
Naama Menda
polishing script for inserting/updating p
o
tato loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Naama Me
n
da
loader for the potato genome loci
commit
|
commitdiff
|
tree
2011-12-15
N
aama Menda
printin
g
to a large se
q
uen
c
e file
commit
|
commitdiff
|
tree
2011-12-14
Naama Menda
fix
e
d
f
e
t
c
h
ing of Solyc mrna
s
e
quences
commit
|
commitdiff
|
tree
2011-12-14
Naama M
e
nd
a
adding
i
ta
g
m
rna seq
u
enc
e
s to loci blast db
commit
|
commitdiff
|
tree
2011-11-23
Na
a
ma Men
d
a
fixed cvterm name
for
p
lot and member stock re
l
ationship
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Na
a
ma
M
enda
c
apitalizing Qual
i
t
y
t
e
rm
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
ref
i
ning add
_
unigene met
h
od
commit
|
commitdiff
|
tree
2011-11-16
N
a
ama Menda
M
e
rge
bra
n
ch 'maste
r
' into topic/locu
s
_cont
r
oller
commit
|
commitdiff
|
tree
2011-11-16
Naama Menda
missin
g
bind value
commit
|
commitdiff
|
tree
2011-11-15
Naama Menda
added locus
f
ield to the searc
h
commit
|
commitdiff
|
tree
2011-11-15
N
a
am
a
Menda
add
i
ng di
s
connec
t
f
o
r
d
b
h
without autocommi
t
commit
|
commitdiff
|
tree
2011-11-08
Naama Menda
u
p
d
ate DBIx::Class phenome
s
chema cl
a
sses
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
Merge b
r
anch 'ma
s
ter'
i
n
to topic/locus_contr
o
ller
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
resolved conflict
commit
|
commitdiff
|
tree
2011-11-07
N
a
ama
Menda
added
a
ccessors
for genome_locus name field
commit
|
commitdiff
|
tree
2011-11-09
Na
a
m
a Men
d
a
disa
b
ling autocomm
i
t
commit
|
commitdiff
|
tree
2011-11-07
Na
a
ma Mend
a
patch for addi
n
g a locus fi
e
ld to
the locus table
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Menda
adding phenotype pro
p
s t
o
solcap phenotypes
commit
|
commitdiff
|
tree
2011-10-30
Naama M
e
nda
u
sing d
b
c->dbh in
s
tead of CXGM
:
:DB::
C
onnection
commit
|
commitdiff
|
tree
2011-10-15
Naama M
e
nda
obs
o
le
t
i
n
g loc
u
s a
l
ias if the ITAG id
is
just the alias
commit
|
commitdiff
|
tree
2011-10-15
Na
a
ma Menda
script
for obs
o
l
e
ting ITAG loci fro
m
phen
o
me
.
locus
commit
|
commitdiff
|
tree
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