repo.or.cz
/
phenome.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
exclude obsolete annotations by looking at locus_dbxref_evidence
2013-07-18
nmenda
e
xclude o
b
solete annotations by lookin
g
a
t
lo
c
us_dbxref_evidence
commit
|
commitdiff
|
tree
2013-07-17
nm
e
nda
refine error messages
commit
|
commitdiff
|
tree
2013-06-25
Naama Menda
root term fo
r
plant_anatomy has changed since we last
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Menda
not
a
good idea t
o
automatically update obsole
t
e terms
.
.
.
commit
|
commitdiff
|
tree
2013-06-24
Naama Menda
upd
a
ted code for
f
lagging obsolete annotations, since
.
.
.
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
print
d
ebugging
i
nfo when parents a
r
e stored
commit
|
commitdiff
|
tree
2013-06-16
Naama Menda
clean
i
ng clone names in the lo
a
ding script
commit
|
commitdiff
|
tree
2013-06-14
nmen
d
a
f
i
x
for s
t
o
c
k
s wit
h
a backsla
s
h in
their name
commit
|
commitdiff
|
tree
2013-06-14
nmen
d
a
c
h
a
n
ge male/female par
e
nts to be the
s
ubjects , to
.
.
.
commit
|
commitdiff
|
tree
2013-06-09
N
a
ama Me
n
da
remove le
a
ding and tr
a
iling spaces from all lo
c
us s
e
arhc
.
.
.
commit
|
commitdiff
|
tree
2013-05-13
nmen
d
a
add plot name to
s
tock uniquename
commit
|
commitdiff
|
tree
2013-05-07
n
m
end
a
typo
commit
|
commitdiff
|
tree
2013-05-07
nmenda
fixe
d
update qu
e
ry for
stoc
k
_
r
elationship when
m
ergin
g
.
.
.
commit
|
commitdiff
|
tree
2013-04-25
n
m
enda
a
d
d year
p
ro
j
ectprop for mult
i
location files
commit
|
commitdiff
|
tree
2013-04-13
Naama
M
enda
deb
u
g info about load
i
ng of plot stocks
commit
|
commitdiff
|
tree
2013-04-13
Naama
M
enda
add proje
c
t na
m
e and
y
ear options
commit
|
commitdiff
|
tree
2013-04-13
Naama Menda
snp load
e
r cre
a
te
s
now new stocks if
n
ot found
i
n db
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
a
dd code f
r
om merge
commit
|
commitdiff
|
tree
2013-04-12
N
a
ama Menda
resolved con
f
lict
commit
|
commitdiff
|
tree
2013-04-19
nme
n
d
a
add m
o
re prop
s
to phenotype data
commit
|
commitdiff
|
tree
2013-04-18
nmenda
fix search q
u
ery
commit
|
commitdiff
|
tree
2013-04-12
Naama Menda
support for
m
ultilo
c
ation files
commit
|
commitdiff
|
tree
2013-04-07
N
aama Men
d
a
re
f
ining c
l
one
name searc
h
commit
|
commitdiff
|
tree
2013-04-07
Naama Mend
a
s
k
ipping n
o
n-numeric
v
alues
commit
|
commitdiff
|
tree
2013-04-07
Naama Menda
change surviving pl
a
nts column header
commit
|
commitdiff
|
tree
2013-04-17
nmenda
fixed errors
commit
|
commitdiff
|
tree
2013-04-06
Naama Me
n
da
loader b
a
s
ed on NRCRI d
a
t
a
.
Should wor
k
w
i
th other
.
.
.
commit
|
commitdiff
|
tree
2013-04-06
Na
a
m
a Men
d
a
typo
commit
|
commitdiff
|
tree
2013-04-06
Naama Menda
m
e
rged changes
commit
|
commitdiff
|
tree
2013-04-06
Naama
M
e
nda
l
oad
e
r f
o
r
c
assava project
s
a
nd their metadata
commit
|
commitdiff
|
tree
2013-04-08
nmend
a
c
a
ssa
v
a clone
l
o
ader
finished
commit
|
commitdiff
|
tree
2013-04-08
n
menda
force using
prov
i
ded
m
arker name
without
c
l
eaning
commit
|
commitdiff
|
tree
2013-03-30
Naama Me
n
da
lo
a
der for
ca
s
sava clo
n
es
a
nd synonyms
commit
|
commitdiff
|
tree
2013-03-28
Naama Menda
r
efine
d
options for loading
solca
p
da
t
a
commit
|
commitdiff
|
tree
2012-11-29
Naama Menda
print shorter mini-ref
commit
|
commitdiff
|
tree
2012-11-29
N
a
ama Menda
reference_id in locusgroup
_
m
e
mbe
r
i
s a dbxref
commit
|
commitdiff
|
tree
2012-11-28
N
a
ama Menda
c
xgn m
e
mbers returns a data s
t
r
u
cture with
t
h
e
locus
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
N
aama Menda
function f
o
r retu
r
ni
n
g the
s
econd level obje
c
t of lo
c
usgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Menda
option
for passing locusgroup_na
m
e as an arg for checking
.
.
.
commit
|
commitdiff
|
tree
2012-11-08
nme
n
da
fix capitalizati
o
n
commit
|
commitdiff
|
tree
2012-11-05
Naama
Menda
tgrc wild accessions
commit
|
commitdiff
|
tree
2012-11-05
Naama Menda
loader for
tgrc wil
d
accessions
commit
|
commitdiff
|
tree
2012-11-06
n
m
enda
correct numeric chromosome n
u
mber
commit
|
commitdiff
|
tree
2012-11-06
nmenda
loader for upda
t
ing unigene
s
l
i
n
ked to loci
b
ased
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-11-06
nmenda
op
t
ion to
r
ead fil
e
nam
e
s
f
rom sprea
d
sheet
commit
|
commitdiff
|
tree
2012-11-06
nmenda
f
i
lter obsolete
l
oci wh
e
n fetching by genome_locus
i
d
commit
|
commitdiff
|
tree
2012-11-04
N
aa
m
a
M
en
d
a
cassava and bar
l
e
y loa
d
ers
commit
|
commitdiff
|
tree
2012-11-03
Naama
M
e
nda
M
erge branch '
m
aster' of g
i
thu
b
.
com:solgeno
m
ics/Phenome
commit
|
commitdiff
|
tree
2012-11-03
N
a
ama Menda
correct t
a
b-
d
elimit
e
d
f
ormat
commit
|
commitdiff
|
tree
2012-11-01
n
m
enda
correc
t
use
r
name for Tomatoma db
commit
|
commitdiff
|
tree
2012-10-31
Naama Me
n
da
population shou
l
d be
f
or mutatns
commit
|
commitdiff
|
tree
2012-10-31
Na
a
m
a Menda
loader f
o
r
t
he Tsukuba mutants
commit
|
commitdiff
|
tree
2012-10-04
Naa
m
a
M
enda
tw
e
ak scale cvtermprop loading script
commit
|
commitdiff
|
tree
2012-07-19
nme
n
da
typ
o
commit
|
commitdiff
|
tree
2012-07-19
nmend
a
loader for
c
assa
v
a SNP da
t
a
commit
|
commitdiff
|
tree
2012-05-02
Naama
M
e
n
da
add
u
pd
a
tin
g
o
f
ge
n
om
e
l
o
cus
i
d
e
n
t
ifier, descrip
t
ion
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
N
aa
m
a Menda
add a user
name option
commit
|
commitdiff
|
tree
2012-04-18
Naama
Menda
typo
commit
|
commitdiff
|
tree
2012-04-18
Naama Menda
a
d
d
e
d a che
c
k fo
r
s
t
ock_
o
wner row
commit
|
commitdiff
|
tree
2012-04-17
Naama
Men
d
a
corrected loa
d
er for cassava pheno
t
y
ping projects
commit
|
commitdiff
|
tree
2012-04-17
Na
a
ma Menda
corrected loa
d
er f
o
r c
a
ssava phe
n
otypi
n
g pr
o
jects
commit
|
commitdiff
|
tree
2012-03-15
Naama Menda
error in fetching
d
bxref ac
c
e
s
sion fo
r
a
p
ub object
commit
|
commitdiff
|
tree
2012-03-15
Naama Men
d
a
modified ontology association scri
p
t to
work w
i
th st
o
cks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naama M
e
nda
updated dum
p
s
cript
.
Make th
i
s a cron
job
.
.
commit
|
commitdiff
|
tree
2012-01-11
Na
a
ma
Me
n
da
re
m
o
v
i
n
g
version number
s
fr
o
m So
l
yc gene id
s
commit
|
commitdiff
|
tree
2012-01-09
N
aama Menda
mov
e
d th
e
genotype
json to genotyepp
r
o
p
commit
|
commitdiff
|
tree
2012-01-06
Naama Menda
script for reload
i
n
g the solcap snp positions
a
s designate
d
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
N
a
ama Men
d
a
lo
a
der for so
l
cap Infinium a
r
ra
y
snp ge
n
otypes
commit
|
commitdiff
|
tree
2011-12-20
Naam
a
Men
d
a
f
ixe
d
typ
o
s
commit
|
commitdiff
|
tree
2011-12-18
Naama
M
e
nda
l
o
ader for t
h
e cassav
a
phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
si
l
ly t
y
po
commit
|
commitdiff
|
tree
2011-12-16
Naama Menda
polishing script for i
n
serting
/
up
d
a
ting potato loci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
N
a
ama
Menda
load
e
r for the potato genome
loci
commit
|
commitdiff
|
tree
2011-12-15
Na
a
ma Men
d
a
printing to a
l
arge sequence file
commit
|
commitdiff
|
tree
2011-12-14
Naam
a
M
e
nda
fixed fetc
h
ing of Solyc
m
r
na sequences
commit
|
commitdiff
|
tree
2011-12-14
Naam
a
M
e
n
d
a
adding i
t
a
g
mrna sequences to l
o
ci blast d
b
commit
|
commitdiff
|
tree
2011-11-23
Naama
M
enda
f
ix
e
d cvterm
name
for plot and member stock relationsh
i
p
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama
Menda
c
apitalizing Quality term
commit
|
commitdiff
|
tree
2011-11-22
Naama Men
d
a
r
efinin
g
a
d
d_unigene
me
t
hod
commit
|
commitdiff
|
tree
2011-11-16
Naam
a
Menda
M
e
rge branch 'mast
e
r' into
t
opic/locus_control
l
er
commit
|
commitdiff
|
tree
2011-11-16
Naama
Menda
missin
g
b
ind value
commit
|
commitdiff
|
tree
2011-11-15
Naam
a
Menda
added
l
ocus
field to the s
e
arch
commit
|
commitdiff
|
tree
2011-11-15
Naama Mend
a
add
i
ng discon
n
ect for db
h
without
autocommit
commit
|
commitdiff
|
tree
2011-11-08
Naama Menda
up
d
a
t
e
DBIx:
:
Class pheno
m
e sche
m
a
c
lasses
commit
|
commitdiff
|
tree
2011-11-07
Naama
Menda
Merg
e
b
ra
n
ch 'mast
e
r
' into topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-07
Na
a
ma Menda
resolved con
f
lict
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
a
dd
e
d accessors fo
r
genome_locus name fie
l
d
commit
|
commitdiff
|
tree
2011-11-09
Naama
Menda
disab
l
ing
au
t
o
commit
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
patch for addi
n
g a locus field
t
o
th
e
locus t
a
b
l
e
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
N
a
a
ma M
e
nda
adding
phenotype props to solcap phenotypes
commit
|
commitdiff
|
tree
2011-10-30
Naama Menda
u
sin
g
d
b
c
->dbh instead
o
f CXGM::
D
B::Connect
i
on
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
o
bsoletin
g
locus
alias if
the
I
TAG
i
d is
just the alias
commit
|
commitdiff
|
tree
2011-10-15
Na
a
ma Menda
script f
o
r ob
s
oleting ITAG loci
f
r
o
m phen
o
m
e
.
locus
commit
|
commitdiff
|
tree
2011-10-15
N
a
ama Menda
r
emoving tr
a
iling spaces fr
o
m unit na
m
e
commit
|
commitdiff
|
tree
2011-10-15
Naama M
e
nda
removing t
r
ailing
s
pacesfromunit name
commit
|
commitdiff
|
tree
2011-10-14
Na
a
ma Menda
f
i
xing
b
u
g
in merge_locus
f
unction whe
n
merged
l
o
cu
s
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
m
aking sure
plant
h
ait terms a
r
e f
o
und
commit
|
commitdiff
|
tree
2011-10-12
Naama Men
d
a
looking at dir
e
ct child terms for
qualit
a
tive terms
commit
|
commitdiff
|
tree
2011-10-11
Naama
Menda
loading qualitative terms correctly
commit
|
commitdiff
|
tree
2011-10-11
Naama
M
enda
addi
n
g un
i
t ontology
c
v
t
e
rms
t
o the phenotyeps
commit
|
commitdiff
|
tree
next