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function for returning the second level object of locusgroup members
2012-11-28
Naama Menda
function for returning the second level
o
b
j
e
ct of
l
ocusgroup
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
Naama Mend
a
opt
i
on for pas
s
ing l
o
cusgroup_nam
e
as an arg f
o
r checking
.
.
.
commit
|
commitdiff
|
tree
2012-11-08
nmenda
fi
x
capitali
z
a
tio
n
commit
|
commitdiff
|
tree
2012-11-05
Naama Men
d
a
t
grc wild
a
ccessi
o
ns
commit
|
commitdiff
|
tree
2012-11-05
Naama
Menda
loader for
tgrc wild accessions
commit
|
commitdiff
|
tree
2012-11-06
nmend
a
correc
t
numeri
c
chromosome nu
m
ber
commit
|
commitdiff
|
tree
2012-11-06
nmend
a
loade
r
for updatin
g
unigenes
l
ink
e
d to loci bas
e
d o
n
.
.
.
commit
|
commitdiff
|
tree
2012-11-06
nme
n
da
option t
o
read
file na
m
es from spreadshee
t
commit
|
commitdiff
|
tree
2012-11-06
nmend
a
filt
e
r obsolete loci whe
n
fetc
h
ing by genome_locus id
commit
|
commitdiff
|
tree
2012-11-04
Naama
M
enda
cassava
and barley
loaders
commit
|
commitdiff
|
tree
2012-11-03
N
aama
M
enda
Mer
g
e bran
c
h
'master' of github
.
com
:
s
o
l
genomics/P
h
enome
commit
|
commitdiff
|
tree
2012-11-03
Naama
M
enda
correct ta
b
-delimited for
m
at
commit
|
commitdiff
|
tree
2012-11-01
nmenda
correct userna
m
e for To
m
atoma db
commit
|
commitdiff
|
tree
2012-10-31
Naam
a
Menda
popu
l
a
tion should be for
m
utatns
commit
|
commitdiff
|
tree
2012-10-31
Naa
m
a Menda
lo
a
der for the Tsukub
a
mut
a
nts
commit
|
commitdiff
|
tree
2012-10-04
Na
a
ma Menda
tweak sc
a
le
c
vtermprop lo
a
ding script
commit
|
commitdiff
|
tree
2012-07-19
nmend
a
ty
p
o
commit
|
commitdiff
|
tree
2012-07-19
nmenda
loade
r
for cassava
SN
P
data
commit
|
commitdiff
|
tree
2012-05-02
N
a
ama Menda
add updating
o
f genome locus identifier, descriptio
n
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Na
a
ma Menda
a
d
d a
u
se
r
nam
e
option
commit
|
commitdiff
|
tree
2012-04-18
N
a
ama
Menda
typo
commit
|
commitdiff
|
tree
2012-04-18
N
a
ama Menda
a
d
ded a ch
e
c
k
for stock_own
e
r row
commit
|
commitdiff
|
tree
2012-04-17
Naama M
e
nd
a
co
r
rected loader
f
or
ca
s
sava phenotyping p
r
ojects
commit
|
commitdiff
|
tree
2012-04-17
Naama Menda
corr
e
cted loader for
cassava phenotyping projects
commit
|
commitdiff
|
tree
2012-03-15
N
a
ama M
e
nda
e
r
r
o
r i
n
fe
t
ching dbxref accession for a pub object
commit
|
commitdiff
|
tree
2012-03-15
Na
a
ma Menda
m
o
dified ont
o
logy as
s
o
ciatio
n
script to work with sto
c
ks
.
.
.
commit
|
commitdiff
|
tree
2012-03-03
Naama Menda
u
pda
t
ed du
m
p scri
p
t
.
Make this a cr
o
n job
.
.
commit
|
commitdiff
|
tree
2012-01-11
N
aama Menda
remo
v
ing
v
ersi
o
n
numbers from Sol
y
c gene ids
commit
|
commitdiff
|
tree
2012-01-09
N
a
ama M
e
nda
moved
the genotype js
o
n to genotyepprop
commit
|
commitdiff
|
tree
2012-01-06
Naama Menda
script for rel
o
ading t
h
e
solca
p
snp positio
n
s as desi
g
nated
.
.
.
commit
|
commitdiff
|
tree
2011-12-23
N
a
a
m
a
M
enda
loader for solca
p
Inf
i
n
i
um ar
r
ay snp genotypes
commit
|
commitdiff
|
tree
2011-12-20
N
a
a
ma Menda
fixed typos
commit
|
commitdiff
|
tree
2011-12-18
Naama Menda
loader for the c
a
ssava phenotypes
commit
|
commitdiff
|
tree
2011-12-17
Naama Menda
silly typo
commit
|
commitdiff
|
tree
2011-12-16
Naama
M
enda
polishing
s
cript
f
o
r
insert
i
ng/updating p
o
tato
l
oci
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
N
a
a
m
a Me
n
d
a
loade
r
for the p
o
tat
o
g
e
n
ome loci
commit
|
commitdiff
|
tree
2011-12-15
Naama Mend
a
print
i
ng to a large s
e
quence f
i
le
commit
|
commitdiff
|
tree
2011-12-14
Na
a
ma Menda
fixe
d
fetching of Solyc m
r
n
a sequences
commit
|
commitdiff
|
tree
2011-12-14
N
aama Menda
addi
n
g
itag m
r
n
a
se
q
uences to loci blas
t
db
commit
|
commitdiff
|
tree
2011-11-23
Naama M
e
nda
fixed
c
vterm name for
plot and member stock rel
a
tion
s
hip
.
.
.
commit
|
commitdiff
|
tree
2011-11-22
Naama Me
n
da
capitalizing Quality t
e
rm
commit
|
commitdiff
|
tree
2011-11-22
Naama Menda
refining
add_unig
e
ne method
commit
|
commitdiff
|
tree
2011-11-16
N
a
a
ma
M
e
n
da
Merge branch
'
ma
s
te
r
' into topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-16
Naama
M
e
nda
m
issing bind value
commit
|
commitdiff
|
tree
2011-11-15
Naama
M
end
a
added locus field to the search
commit
|
commitdiff
|
tree
2011-11-15
Naama Men
d
a
a
dding di
s
c
on
n
e
c
t for
d
bh without autocommit
commit
|
commitdiff
|
tree
2011-11-08
Na
a
ma Menda
upd
a
t
e
DBIx
:
:Class phenome schema classes
commit
|
commitdiff
|
tree
2011-11-07
Naama Me
n
da
Merge b
r
anch
'master' i
n
t
o
topic/locus_controller
commit
|
commitdiff
|
tree
2011-11-07
Naama Menda
res
o
l
v
e
d
conf
l
ict
commit
|
commitdiff
|
tree
2011-11-07
N
aama Menda
added acce
s
sors for genome_locus
name
f
ield
commit
|
commitdiff
|
tree
2011-11-09
N
aama
Menda
di
s
a
b
ling au
t
o
c
ommit
commit
|
commitdiff
|
tree
2011-11-07
Naa
m
a Menda
pat
c
h for adding a
l
o
cus field to
t
he locus t
a
ble
.
.
.
.
commit
|
commitdiff
|
tree
2011-11-06
Naama Men
d
a
adding
p
h
enotype pro
p
s
t
o solca
p
phenot
y
pes
commit
|
commitdiff
|
tree
2011-10-30
N
a
ama Menda
using
d
bc->dbh instead of CXGM
:
:
DB
:
:Connection
commit
|
commitdiff
|
tree
2011-10-15
Naama Menda
obsoleting locus alias if the ITAG id is just the
a
l
i
a
s
commit
|
commitdiff
|
tree
2011-10-15
Naam
a
Men
d
a
sc
r
ipt for obsoleting ITAG lo
c
i from pheno
m
e
.
locus
commit
|
commitdiff
|
tree
2011-10-15
Naama Mend
a
removing trai
l
ing
spaces from unit na
m
e
commit
|
commitdiff
|
tree
2011-10-15
Na
a
ma Menda
rem
o
v
i
ng trailin
g
spac
e
sfromu
n
it nam
e
commit
|
commitdiff
|
tree
2011-10-14
Naama Men
d
a
f
ixing
bug in m
e
rge_locus f
u
ncti
o
n
w
hen m
e
rged lo
c
u
s
.
.
.
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
mak
i
ng
s
ure plant hait t
e
rms are found
commit
|
commitdiff
|
tree
2011-10-12
Naama Menda
looking at direct child terms for qualitative terms
commit
|
commitdiff
|
tree
2011-10-11
Naa
m
a
M
enda
loading qualitative term
s
c
o
rrec
t
ly
commit
|
commitdiff
|
tree
2011-10-11
Naam
a
Menda
addin
g
un
i
t ontology cvterms to the p
h
eno
t
yeps
commit
|
commitdiff
|
tree
2011-10-03
Naama Menda
ju
s
t warn
i
ng if parent stock is no
t
found
commit
|
commitdiff
|
tree
2011-10-03
N
a
ama Menda
typo
commit
|
commitdiff
|
tree
2011-10-03
Na
a
ma Menda
pars
i
ng mor
e
options
f
o
r solca
p
im
a
ge files
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
find th
e
year of
t
he proect from
the metadata file
commit
|
commitdiff
|
tree
2011-10-02
Naama Menda
ye
a
r should be a pro
p
e
rty of the project
commit
|
commitdiff
|
tree
2011-10-02
Naama
M
e
n
da
searcg i
s
better than find he
r
e
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
Na
a
m
a
Menda
skipping for n
o
n-
e
xisting plots
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama Menda
c
he
c
k
i
ng
correctly if an image is loaded an
d
if was
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Naama Menda
typo
commit
|
commitdiff
|
tree
2011-09-27
N
a
ama Me
n
da
better
p
rint
i
ng o
f
erro
r
messages
commit
|
commitdiff
|
tree
2011-09-27
Naama Men
d
a
added a
c
he
c
k
for exist
i
ng stoc
k
-image l
i
nks
commit
|
commitdiff
|
tree
2011-09-23
Naama Men
d
a
last typ
o
?
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
t
y
po
commit
|
commitdiff
|
tree
2011-09-23
N
aam
a
M
enda
typo
commit
|
commitdiff
|
tree
2011-09-23
Naama Menda
added e
x
ception
f
or
p
lantin
g
date
pro
p
erty
commit
|
commitdiff
|
tree
2011-09-23
Naam
a
Menda
added
year option for finding unique plo
t
names
commit
|
commitdiff
|
tree
2011-09-18
Naama Men
d
a
se
t
tin
g
the transa
c
tion
p
ro
p
erly
commit
|
commitdiff
|
tree
2011-09-18
Naama Menda
c
heckin
g
if
a
syno
n
ym
value wa
s
alr
e
ady
l
oaded
commit
|
commitdiff
|
tree
2011-09-17
Naama Me
n
da
l
o
ader fo
r
solcap
i
mages
commit
|
commitdiff
|
tree
2011-09-17
Naama Me
n
da
using txn_do
fo
r
the tran
s
action
commit
|
commitdiff
|
tree
2011-09-16
Naama Menda
modi
f
ied options for
l
oadi
n
g
solcap TA da
t
a
commit
|
commitdiff
|
tree
2011-09-16
N
aama Menda
added parsi
n
g of qualitativ
e
traits into the tomato
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
Naama
M
e
nda
fix
e
d load
i
ng stoc
k
owne
r
into the
r
i
ght place
commit
|
commitdiff
|
tree
2011-09-14
Naama
Menda
n
o
n
e
ed to clon
e
th
e
dbh
commit
|
commitdiff
|
tree
2011-09-14
Na
a
ma Menda
added mi
s
sing phenome DBIC c
l
asse
s
commit
|
commitdiff
|
tree
2011-09-14
Naa
m
a Menda
u
s
ing CXGN::Phenom
e
::Schema for checking
/
i
nserting
.
.
.
commit
|
commitdiff
|
tree
2011-09-14
N
aama Menda
r
e
mov
e
d outdated loading s
c
ript
commit
|
commitdiff
|
tree
2011-09-14
Naa
m
a Menda
upd
a
t
ed script for loadi
n
g solc
a
p
ac
c
essions
commit
|
commitdiff
|
tree
2011-09-14
Naama M
e
nda
up
d
ated
C
XGN::
P
henome::Schema classes
commit
|
commitdiff
|
tree
2011-09-13
Na
a
ma Mend
a
typo
commit
|
commitdiff
|
tree
2011-09-04
Naama
M
enda
l
o
a
d
ing script for Sol
C
AP
p
o
t
a
to imag
e
s
commit
|
commitdiff
|
tree
2011-09-02
Na
a
m
a
Mend
a
lod
e
r for images from Sandy Knapp
commit
|
commitdiff
|
tree
2011-08-31
Naama Me
n
da
adding da
t
e prop to ex
p
erime
n
ts
commit
|
commitdiff
|
tree
2011-08-28
N
a
a
m
a
Me
n
da
loading script for p
o
tato solcap data
.
Hopefully ne
x
t
.
.
.
commit
|
commitdiff
|
tree
2011-08-25
Naama
M
enda
l
oader for TAIR l
o
c
i
commit
|
commitdiff
|
tree
2011-06-19
Na
a
ma Menda
updated solcap stu
f
f for relo
a
ding
t
he
p
o
ta
t
o 20
0
9
.
.
.
commit
|
commitdiff
|
tree
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