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2010-08-03	David van der Spoel	Fixed documentation text according to bugzilla 486	commit \| commitdiff \| tree
2010-08-01	David van der Spoel	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-01	David van der Spoel	Moved pdb2top.h from src/kernel to include to allow...	commit \| commitdiff \| tree
2010-07-31	David van der Spoel	Renamed typename to my_typename in index.c since typename...	commit \| commitdiff \| tree
2010-07-15	David van der Spoel	Fixed compilation issue corresponding to bug 468	commit \| commitdiff \| tree
2010-07-14	David van der Spoel	Fixed bug 467 realting to pdb2gmx output of the water...	commit \| commitdiff \| tree
2010-07-14	David van der Spoel	Added citation for scattering factors. Used in g_rdf...	commit \| commitdiff \| tree
2010-07-14	David van der Spoel	Added more atoms to the scattering factor data file.	commit \| commitdiff \| tree
2010-07-14	David van der Spoel	Fixed bug 462. pdb2gmx should now produce the correct...	commit \| commitdiff \| tree
2010-07-13	David van der Spoel	Fixed bug 466 by commenting out the offending lines...	commit \| commitdiff \| tree
2010-07-12	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-12	David van der Spoel	Added initialization of pbc struct in genborn.c.	commit \| commitdiff \| tree
2010-07-09	David van der Spoel	Added initialization of pbc structure before calc_gb_forces...	commit \| commitdiff \| tree
2010-07-08	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-08	David van der Spoel	Added bondedtypes section to rtp files. It might be...	commit \| commitdiff \| tree
2010-07-08	David van der Spoel	Removed possible SEGVs in rmpbc in case ePBC = No.	commit \| commitdiff \| tree
2010-07-08	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-07	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-07	David van der Spoel	Fixed miserable bug in commrec.h where an int array...	commit \| commitdiff \| tree
2010-07-06	David van der Spoel	Fixed bug in gmx_sumf_comm where a double array was...	commit \| commitdiff \| tree
2010-07-05	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-05	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-05	David van der Spoel	Added sfactor.dat to the installation targets in share...	commit \| commitdiff \| tree
2010-07-03	David van der Spoel	Fixed include statements such that double precision...	commit \| commitdiff \| tree
2010-07-02	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-02	David van der Spoel	Made removing pbc non-static. This affects many analysis...	commit \| commitdiff \| tree
2010-07-02	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-02	David van der Spoel	Fixed bug http://bugzilla.gromacs.org/show_bug.cgi...	commit \| commitdiff \| tree
2010-06-30	David van der Spoel	Fixed http://bugzilla.gromacs.org/show_bug.cgi?id=457...	commit \| commitdiff \| tree
2010-06-30	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-30	David van der Spoel	Fixed bug in b-factors output by g_confrms. They were...	commit \| commitdiff \| tree
2010-06-27	David van der Spoel	Added missing argument step to trotter_update. How...	commit \| commitdiff \| tree
2010-06-27	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-27	David van der Spoel	Updated CMakeLists.txt in ngmx directory to exclude...	commit \| commitdiff \| tree
2010-06-27	David van der Spoel	Fixed many issues regarding to compilation with C+...	commit \| commitdiff \| tree
2010-06-18	David van der Spoel	Fixed Makefile.am leading to warnings.	commit \| commitdiff \| tree
2010-06-14	David van der Spoel	Fixed make_edi.c	commit \| commitdiff \| tree
2010-06-14	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-14	David van der Spoel	Added more fixes in comment texts, generously provided...	commit \| commitdiff \| tree
2010-06-12	David van der Spoel	Fixed a lot of spelling errors in comments and documentation...	commit \| commitdiff \| tree
2010-06-11	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-11	David van der Spoel	Fixed force field files for ATP in order to clear bug	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Made legend more or less work in g_chi. Don't know...	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Fixed SEGV in g_chi as described in bug 430.	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Added option -nopbc to g_rmsdist in order to fix	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Pedantic change in the check whether a filename is...	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Renamed some programs to follow the g_ doctrine: luck...	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Cleaned up and renamed files in ngmx directory to better...	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Renamed some files in a roundabout way to adhere to...	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Removed average.c, that functionality is now in g_analyze.	commit \| commitdiff \| tree
2010-06-10	David van der Spoel	Fixed strange typo in gmx_dih.c	commit \| commitdiff \| tree
2010-06-06	David van der Spoel	Moved warning message in add_atomtype to be printed...	commit \| commitdiff \| tree
2010-06-03	David van der Spoel	Made x2top (very) slightly functional again. Still...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Changed error message for settle problems, such that...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Added explicit angle in ACE declaration in gromacs...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Fixed type in gmx_morph.c: efTRO -> efTRX which lead...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Fixed bug 396. In fact it was already fixed partly.	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Fixed bug 401 by implementing the proposed patch that...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Fixed bug 381 by adding the number of the first atom...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Fixed bug 349. The file made with the -vis option has...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Removed option CAN_DT from g_msd, since it cannot handle...	commit \| commitdiff \| tree
2010-06-02	David van der Spoel	Increased buffer size for reading in a whole file at...	commit \| commitdiff \| tree
2010-05-25	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-25	David van der Spoel	Added one more!	commit \| commitdiff \| tree
2010-05-24	David van der Spoel	Removed C++ style comments in mdrun.	commit \| commitdiff \| tree
2010-05-21	David van der Spoel	Fixed compilation warnings and removed spurious C+...	commit \| commitdiff \| tree
2010-05-21	David van der Spoel	Added 1	commit \| commitdiff \| tree
2010-05-20	David van der Spoel	Made g_analyze compile again, but ot link yet.	commit \| commitdiff \| tree
2010-05-19	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-19	David van der Spoel	Added check in read_pdb for existence of t_resinfo...	commit \| commitdiff \| tree
2010-05-18	David van der Spoel	Added a cool quote, and removed two comma's in openmp...	commit \| commitdiff \| tree
2010-05-16	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-16	David van der Spoel	Fixed scattering function code in g_rdf. A new file...	commit \| commitdiff \| tree
2010-05-16	David van der Spoel	Added multi regression analysis to g_analyze. See info...	commit \| commitdiff \| tree
2010-05-16	David van der Spoel	Fixed compilation issue in geminate.c due to non-defined...	commit \| commitdiff \| tree
2010-05-16	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-12	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-12	David van der Spoel	Delted two more superfluous files	commit \| commitdiff \| tree
2010-05-11	David van der Spoel	Cleaned up in top directory. Moved a few old itp files...	commit \| commitdiff \| tree
2010-05-11	David van der Spoel	Moved phosphate files into gmx.ff directory.	commit \| commitdiff \| tree
2010-05-11	David van der Spoel	Moved propanol itp file top oplsaa.ff, removed two...	commit \| commitdiff \| tree
2010-05-02	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-04-30	David van der Spoel	Added one	commit \| commitdiff \| tree
2010-04-26	David van der Spoel	Made histogramming slightly more flexible. Used in...	commit \| commitdiff \| tree
2010-04-12	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-04-12	David van der Spoel	Changed the output of topology files to include the...	commit \| commitdiff \| tree
2010-04-06	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-04-06	David van der Spoel	Added statement to set rtp to NULL.	commit \| commitdiff \| tree
2010-04-06	David van der Spoel	Revert "Added argument rtpname to t_atoms_set_resinfo...	commit \| commitdiff \| tree
2010-04-06	David van der Spoel	Added argument rtpname to t_atoms_set_resinfo to avoid...	commit \| commitdiff \| tree
2010-04-04	David van der Spoel	Added one.	commit \| commitdiff \| tree
2010-04-04	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-03-31	David van der Spoel	Added one	commit \| commitdiff \| tree
2010-03-12	David van der Spoel	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-03-12	David van der Spoel	Added flush after writing to debug file	commit \| commitdiff \| tree
2010-03-11	David van der Spoel	Aded function copy_t_atoms, updated function add_t_atoms...	commit \| commitdiff \| tree
2010-03-10	David van der Spoel	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-03-10	David van der Spoel	Added routine add_t_atoms to increase the length of...	commit \| commitdiff \| tree
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