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2010-08-22	Erik Lindahl	Amber force fields now pass validation. Beta status...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Added F77 kernel setup headers	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed synchronization counter update for f77 kernels	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed a bug for GB OBC born radius calculation in SSE2...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed an uninitialized variable bug	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed a minor bug that caused Fortran builds to fail...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Dont write nonpolar surface energy to energy file if...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed so Fortran kernels work again	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Upgraded to latest autoconf platform detection scripts	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Fixed a chain rule error in double prec. SSE2 GB for...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-21	Erik Lindahl	Double precision SSE2 kernels for Generalized Born...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Updated GB SSE2 kernels, testing in progress now...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Modified atom order in Amber nucleotide improper torsions...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Modified improper torsion atom order in Amber TRP residues...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Fix to write GB and surface energy to separate terms...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Enabled double precision all-vs-all kernels. Tested...	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Fixed simple typo in last commit	commit \| commitdiff \| tree
2010-08-18	Erik Lindahl	Fixed previous nasm-segv bug for intel-syntax SSE in...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Fixed 64-bit bug in SSE assembly (only visible with...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Worked around an internal compiler error for MSVC when...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Deprecated -ins option to g_hbond since nobody seems...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Copied all-vs-all change from x86-64 to ia32 kernels too	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-17	Erik Lindahl	Fixed potential error in coulomb energy, and maybe...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Added double precision SSE2 generalized born kernels...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Added ia32 all-vs-all kernels	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Updated autoconf to work with renamed SSE2 x86-64 asm...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Renamed SSE2 x86-64 asm test file to be consistent...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Fixed typo to detect both x86_64->i386 and i386->x86_64...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Fixed a naming error introduced yesterday in 32bit...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Fixed compiler errors for MSVC inline intrinsics and...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Fixed checkpoint problem in 32 bits. We should always...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Removed extra TER records after chains we think are...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-12	Erik Lindahl	Fixed SSE kernels in double precision for Cmake, working...	commit \| commitdiff \| tree
2010-08-11	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-11	Erik Lindahl	Cmake and Nasm support for windows	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Moved four more SSE assembly files to avoid double...	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Changes to make Cmake work under windows again	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Renamed intel syntax assembly files to avoid double...	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Added NASM Cmake support	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-10	Erik Lindahl	MAYBE a fix for Berk's Heme problem. Needs testing	commit \| commitdiff \| tree
2010-08-08	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-08	Erik Lindahl	Added NHE as an Amber aminoacid residue type	commit \| commitdiff \| tree
2010-08-08	Erik Lindahl	Copied CK-CB-N*-CT Amber improper to also list CK-CB...	commit \| commitdiff \| tree
2010-08-06	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-06	Erik Lindahl	Fixed incorrect #endif -> #else that caused the C all...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed a bug in index generation for non-adjacent protein...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed nonexistent return type on gmx_mm_sincos_pd	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Added out int-extraction macro to double precision...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Added double precision SSE2 transcendental functions...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed accuracy issues in gmx_mm_log_ps(), and added...	commit \| commitdiff \| tree
2010-08-01	Erik Lindahl	Modified index processing to reinstate residue-splitting...	commit \| commitdiff \| tree
2010-08-01	Erik Lindahl	Added ion classes to residuetypes.dat	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced non-thread-safe calls to ctime() with our...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Added portable gmx_ctime_r() to enable replacement...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced localtime with localtime_r() on unix and localtime_...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced readdir() with readdir_r() to avoid future...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Ported x86-64 single precision SSE2 all-vs-all patch...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Commented out calls to double prec. SSE2 all-vs-all...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Worked around cross-inclusion problem between grompp...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Removed deprecated nsb.h header	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Changed index group analysis to only create water_and_ions...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Added residuedefinitions for water, and introduced...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Reverted incorrect Makefile edit earlier today	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Improved chain separation detection for pdb2gmx, and...	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Added missing double prec. SSE2 header file	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Temporarily disabled a new pdb2gmx option	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Modified PDB io code to merely store the chain _identifier_...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added lots of missing cmakedefines to config.h.cmakein	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added lots of header cmakedefines to config.h.cmakein...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added NME to the list of amino acid names	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	pdb2gmx now applies termini to the first/last residues...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added gbsa.itp to Makefile.am in all amber force fields...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Changed to non-prefixed default RNA residue names in...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Changed to non-prefixed default RNA residue names in...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added files in preparation of double-precision AllvsAll...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added gbsa parameters to Amber force fields	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Resolved merge conflict	commit \| commitdiff \| tree
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