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2011-01-28	Mark Abraham	Added forgotten file	commit \| commitdiff \| tree
2011-01-28	Mark Abraham	Turned g_options into a normal GROMACS tool	commit \| commitdiff \| tree
2011-01-28	Mark Abraham	Renamed src/tools/options.c	commit \| commitdiff \| tree
2011-01-28	Mark Abraham	Improved grompp documentation	commit \| commitdiff \| tree
2011-01-25	Mark Abraham	Improved genion -h	commit \| commitdiff \| tree
2011-01-25	Mark Abraham	Relocated some t_matrix documentation	commit \| commitdiff \| tree
2011-01-25	Mark Abraham	Improved do_dssp -ssdump output	commit \| commitdiff \| tree
2011-01-25	Mark Abraham	Improved do_dssp -sc output	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	Remove g_highway from list of programs	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	Improved conversion of documentation to LaTeX	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	Improved consistency of text style usage	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	Minor wording fixes	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	Moved options.c to tools subdir	commit \| commitdiff \| tree
2011-01-23	Mark Abraham	cmake: added back gsl support (GMX_GSL, disabled by...	commit \| commitdiff \| tree
2011-01-20	Mark Abraham	Added NHE to OPLS/AA pdb2gmx hydrogen database	commit \| commitdiff \| tree
2011-01-20	Mark Abraham	Made gmxdump error message clearer.	commit \| commitdiff \| tree
2011-01-18	Mark Abraham	Improved .mdp file comment about the 'define' field	commit \| commitdiff \| tree
2011-01-17	Mark Abraham	Fix Angstrom <=> nm error in documentation	commit \| commitdiff \| tree
2011-01-13	Mark Abraham	Made src/kernel/repl_ex.c legible	commit \| commitdiff \| tree
2011-01-07	Mark Abraham	Added note that g_msd -mol does treat PBC (by making...	commit \| commitdiff \| tree
2011-01-07	Mark Abraham	Implemented effective test for MPI_IN_PLACE, thanks...	commit \| commitdiff \| tree
2011-01-06	Mark Abraham	Stop CMake defaulting to turning off compiler warnings...	commit \| commitdiff \| tree
2010-12-06	Mark Abraham	Added comments and workaround for IBM's BlueGene(/L...	commit \| commitdiff \| tree
2010-11-22	Mark Abraham	Added a hint to the documentation for creating .tpr...	commit \| commitdiff \| tree
2010-11-12	Mark Abraham	Minor trjconv documentation formatting fix	commit \| commitdiff \| tree
2010-11-12	Mark Abraham	g_densmap -od writes a .dat file and prevents writing...	commit \| commitdiff \| tree
2010-11-09	Mark Abraham	GMX_POWERPC_INVSQRT should be OFF in CMakeLists.txt...	commit \| commitdiff \| tree
2010-11-07	Mark Abraham	Made mdrun exit with a fatal error for EM or NM with...	commit \| commitdiff \| tree
2010-11-06	Mark Abraham	Fixed .xvg legends for g_sas options -or and -oa	commit \| commitdiff \| tree
2010-10-24	Mark Abraham	Don't sprintf variable-sized input into fixed-size...	commit \| commitdiff \| tree
2010-10-22	Mark Abraham	Re-enabled for BlueGene/L an optimization in the BG...	commit \| commitdiff \| tree
2010-10-22	Mark Abraham	Rearranged cmake+BlueGene solution to have the same...	commit \| commitdiff \| tree
2010-10-22	Mark Abraham	Made GMX_POWERPC_INVSQRT work properly on Power6 and...	commit \| commitdiff \| tree
2010-10-22	Mark Abraham	Power6 FORTRAN kernels do not work on PPC440 or PPC450...	commit \| commitdiff \| tree
2010-10-22	Mark Abraham	Fixing a trivial mangle introduced in b5d842ff1d94174b6e7012...	commit \| commitdiff \| tree
2010-10-20	Mark Abraham	Fixed cmake to work with BlueGene/L. This fix does...	commit \| commitdiff \| tree
2010-10-05	Mark Abraham	Fix manual references for 'continuation', rather than...	commit \| commitdiff \| tree
2010-10-05	Mark Abraham	mk_dlist() changed its parameter list, so its declaration...	commit \| commitdiff \| tree
2010-09-23	Mark Abraham	Fixes for g_chi for bugzilla 569, so that it now uses...	commit \| commitdiff \| tree
2010-09-23	Mark Abraham	Extensions to the gmx_residuetypes_t API to meet the...	commit \| commitdiff \| tree
2010-09-14	Mark Abraham	When grompp failed to find the forcefield, the error...	commit \| commitdiff \| tree
2010-09-14	Mark Abraham	Formatting fixes to documentation	commit \| commitdiff \| tree
2010-09-09	Mark Abraham	Added TIP5p to CHARMM forcefield by analogy with AMBER03...	commit \| commitdiff \| tree
2010-09-09	Mark Abraham	Spelling fix	commit \| commitdiff \| tree
2010-09-08	Mark Abraham	Added note to g_covar about memory costs and managing...	commit \| commitdiff \| tree
2010-09-02	Mark Abraham	Fix spelling error	commit \| commitdiff \| tree
2010-09-01	Mark Abraham	Formatting fixes to documentation	commit \| commitdiff \| tree
2010-09-01	Mark Abraham	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-09-01	Mark Abraham	make_opt.html now doesn't use <h4>, rather it uses...	commit \| commitdiff \| tree
2010-09-01	Mark Abraham	General fixes	commit \| commitdiff \| tree
2010-08-30	Mark Abraham	Made a pdb2gmx message less cryptic when it finds multiple...	commit \| commitdiff \| tree
2010-08-26	Mark Abraham	Spelling fixes in pdb2gmx documentation	commit \| commitdiff \| tree
2010-08-26	Mark Abraham	Made the description of ld_seed and gen_seed seed generation...	commit \| commitdiff \| tree
2010-08-26	Mark Abraham	Fixed HTML documentation to use proper '&ge', not ...	commit \| commitdiff \| tree
2010-08-26	Mark Abraham	Clarified documentation about when gen_vel generates...	commit \| commitdiff \| tree
2010-08-25	Mark Abraham	Fixed leak from unclosed directory handles when pdb2gmx...	commit \| commitdiff \| tree
2010-08-25	Mark Abraham	Made pdb2gmx be slightly more helpful when using AMBER...	commit \| commitdiff \| tree
2010-08-23	Mark Abraham	Two spelling fixes in comment and output	commit \| commitdiff \| tree
2010-06-24	Mark Abraham	Added snew_aligned and sfree_aligned for managing n...	commit \| commitdiff \| tree

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