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Enforced rotation: use the right tpx_version
2010-11-15
C
a
r
st
e
n
Kutzner
Enforced rotation:
use the
r
i
g
ht
t
px_vers
i
on
commit
|
commitdiff
|
tree
2010-11-15
Carsten Kutzner
E
n
for
c
ed rotation: s
e
t
the right tpx_versio
n
commit
|
commitdiff
|
tree
2010-11-15
Carsten Kutzn
e
r
Merge branch 'release-4-5-patch
e
s' in
t
o
rotati
o
n-4-
5
commit
|
commitdiff
|
tree
2010-11-08
Ca
r
sten
K
utzner
E
nfo
r
ced rotati
n
: Pu
t
in
che
c
k for acos value;
enhance
d
.
.
.
commit
|
commitdiff
|
tree
2010-11-08
C
arsten Kutzner
M
e
rge
b
ran
c
h
'release-4-5-pat
c
hes' into
ro
t
at
i
on-
4
-5
commit
|
commitdiff
|
tree
2010-11-05
Carsten K
u
tz
n
er
F
lex
i
b
le RMSD fitt
i
ng is
n
ow o
p
tionally mass-w
e
ighte
d
commit
|
commitdiff
|
tree
2010-11-05
Carsten Kutzner
Pr
i
nt
warnin
g
when ref
e
rence file
is
set
b
u
t
c
ould
.
.
.
commit
|
commitdiff
|
tree
2010-11-05
Car
s
ten Kut
z
n
er
Mer
g
e
b
r
an
c
h 'release-4-5
-
patches' into rotation-4-5
commit
|
commitdiff
|
tree
2010-11-04
Car
s
t
en Kutzner
Dox
y
gen comment for dd_make_loca
l
_r
o
t
atio
n
_groups
commit
|
commitdiff
|
tree
2010-11-04
Carsten K
u
tzner
Merge b
r
anch 'r
e
l
e
ase-4-5-p
a
tch
e
s' into rotation-4-5
commit
|
commitdiff
|
tree
2010-11-04
C
a
r
st
e
n Kutzn
e
r
Upd
a
ted n
o
rmaliza
t
ion factor
commit
|
commitdiff
|
tree
2010-10-29
Carsten Kutzner
F
ixe
d
segv in gmx_hbon
d
commit
|
commitdiff
|
tree
2010-10-22
C
a
rs
t
en Kutzner
Fixed
segv in g
_
pot
e
ntial
.
Fi
e
l
d
output ha
s
now also
.
.
.
commit
|
commitdiff
|
tree
2010-09-22
Ca
r
st
e
n K
u
tzner
E
n
forc
e
d rotation: corrected PBC treatmen
t
commit
|
commitdiff
|
tree
2010-09-22
Carsten Kutz
n
er
Merg
e
bran
c
h 'release-4-5-patch
e
s'
i
nto rotation-4-5
commit
|
commitdiff
|
tree
2010-09-21
Carsten
Kut
z
ner
Added
m
is
s
i
n
g #ifdef around MPI directive
commit
|
commitdiff
|
tree
2010-09-20
C
arsten Ku
t
zne
r
gm
x
_
pme_erro
r
no
w
uses at most
al
l
char
g
es for
t
h
e
.
.
.
commit
|
commitdiff
|
tree
2010-09-20
Ca
r
sten Ku
t
zner
Enf
o
rced ro
t
ation: Issue a war
n
i
n
g when actua
l
box
.
.
.
commit
|
commitdiff
|
tree
2010-09-20
Carsten K
u
tz
n
er
Me
r
ge bran
c
h
'
rel
e
ase-4-5-patc
h
es' into rotation-4-5
commit
|
commitdiff
|
tree
2010-09-17
Cars
t
en K
u
tzner
Fixed reproducibilit
y
of g_pme_error results in paral
l
el
commit
|
commitdiff
|
tree
2010-09-17
Carsten
K
utzner
Enforced rotation: be more verbose if -v switch
is
.
.
.
commit
|
commitdiff
|
tree
2010-09-17
Carste
n
Kutzner
M
e
rge bran
c
h '
r
elea
s
e-4-
5
-patches' into rotati
o
n-4-5
commit
|
commitdiff
|
tree
2010-09-16
C
a
rsten Kutzner
Enf
o
r
ced rotatio
n
now
us
e
s
t
h
read-save gmx_qsort
commit
|
commitdiff
|
tree
2010-09-16
Carsten
Kutz
n
er
Enforce
d
rota
t
ion: added flex-t and
flex2-t po
t
entials
commit
|
commitdiff
|
tree
2010-09-14
Carsten Ku
t
zner
Removed unused
c
ode from g_p
m
e_er
r
or
commit
|
commitdiff
|
tree
2010-09-14
Carsten Kutzner
Merge branch 'releas
e
-4-5
-
p
atc
h
es' into r
o
tation-4-5
commit
|
commitdiff
|
tree
2010-09-01
Carste
n
Kutzner
Fi
x
ed m
a
k
e
_edi
when
no fitting wa
s
done in g_c
o
var
commit
|
commitdiff
|
tree
2010-08-30
Carste
n
Kutzner
Enforced
rot
a
ti
o
n: pr
e
p
a
rations for flex-t and flex2
.
.
.
commit
|
commitdiff
|
tree
2010-08-30
Carsten Kutzner
Merge branch 'releas
e
-4-5-pat
c
hes' into
r
otation-4-5
commit
|
commitdiff
|
tree
2010-08-27
Carste
n
K
ut
z
ne
r
Enfo
r
ced rotation: Remov
e
d unused enum
commit
|
commitdiff
|
tree
2010-08-27
Carste
n
Kutzner
Merge branc
h
'rel
e
ase-
4
-5-pat
c
hes' into rot
a
tion
-
4
-5
commit
|
commitdiff
|
tree
2010-07-29
C
arsten Kutzner
Merge branc
h
'mas
t
er'
i
nto
r
otation
commit
|
commitdiff
|
tree
2010-07-28
Ca
r
s
t
en Ku
t
zn
e
r
Merge branch 'mast
e
r' into
rotat
i
on
commit
|
commitdiff
|
tree
2010-07-27
C
arsten
K
utzner
Me
r
ge bran
c
h 'master' into rotatio
n
commit
|
commitdiff
|
tree
2010-07-27
Carsten K
u
tzner
Enforced rotat
i
on: co
r
rected var
i
ab
l
e type
commit
|
commitdiff
|
tree
2010-07-27
Carsten Kutzn
e
r
Merge
b
ra
n
c
h
'
m
aste
r
' into rota
t
ion
commit
|
commitdiff
|
tree
2010-07-27
Carsten Kutzner
Merge branch 'mast
e
r' into rotation
commit
|
commitdiff
|
tree
2010-07-26
Car
s
ten K
u
t
zner
Merge b
r
anc
h
'
m
ast
e
r' into rotation
commit
|
commitdiff
|
tree
2010-07-26
C
arsten Kutz
n
er
Enforced rotation: a
d
d
s
tring
.
h header
commit
|
commitdiff
|
tree
2010-07-23
Carst
e
n
Kutzner
M
erge b
r
anch 'master' in
t
o
r
o
t
a
t
i
o
n
commit
|
commitdiff
|
tree
2010-07-23
C
a
r
sten
K
u
tzner
E
nforced rotatio
n
: do n
o
t print diagnost
i
c output
commit
|
commitdiff
|
tree
2010-07-22
Carsten Kutzner
Removed // comment
in qm_orca
.
c
commit
|
commitdiff
|
tree
2010-07-22
C
a
rs
t
e
n Kutzner
Merge branc
h
'ma
s
t
e
r' into rotation
commit
|
commitdiff
|
tree
2010-07-21
Carsten Ku
t
zner
Merge branch 'mast
e
r' into rot
a
tio
n
commit
|
commitdiff
|
tree
2010-07-21
Carst
e
n Kutzner
Enf
o
r
ced ro
t
ation
commit
|
commitdiff
|
tree
2010-07-21
Carste
n
Kutzn
e
r
Merge branc
h
'master' int
o
ro
t
ation
commit
|
commitdiff
|
tree
2010-07-20
Carst
e
n Kutzner
M
erge branch '
m
ast
e
r'
into rot
a
ti
o
n
commit
|
commitdiff
|
tree
2010-07-19
Carsten
K
utzner
Enforced rotation: fix
masses arra
y
commit
|
commitdiff
|
tree
2010-07-19
Carsten Kutz
n
er
Merge branch
'
m
a
ster' into rotation
commit
|
commitdiff
|
tree
2010-07-16
Carsten Kut
z
ne
r
Mer
g
e branch 'mast
e
r' into rot
a
tion
commit
|
commitdiff
|
tree
2010-07-14
Carsten Kutzn
e
r
F
ixed
s
everal
m
inor
i
ssues in ED/flooding modu
l
e
commit
|
commitdiff
|
tree
2010-07-13
Cars
t
en Kutzner
Merge branch 'mas
t
e
r
'
into
rotation
commit
|
commitdiff
|
tree
2010-07-12
C
arsten
Kutzner
g
_tune_pme now
r
e
c
al
c
ulates sca
l
ing factors fr
o
m actual
.
.
.
commit
|
commitdiff
|
tree
2010-07-06
Carsten Kutzner
Merge br
a
nch 'maste
r
' i
n
to rot
a
tion
commit
|
commitdiff
|
tree
2010-07-06
Carsten Kutzn
e
r
Enforc
e
d r
o
tation: precalculatio
n
of i
n
ner sum
for
.
.
.
commit
|
commitdiff
|
tree
2010-06-29
Ca
r
sten Kut
z
ner
add -cpnum suppo
r
t to
g
_tun
e
_pme
commit
|
commitdiff
|
tree
2010-06-28
C
a
rsten K
u
tzner
m
o
v
ed error-ch
e
ck aft
e
r
l
ogfi
l
e pa
r
sing
commit
|
commitdiff
|
tree
2010-06-25
Carsten Kutzner
Parse stder
r
of tuning runs to catch fatal erro
r
s whic
h
.
.
.
commit
|
commitdiff
|
tree
2010-06-25
Cars
t
en Kutzner
hidde
n
-
p
assall
opti
o
n can be u
s
ed to add extra strings
.
.
.
commit
|
commitdiff
|
tree
2010-06-24
Carsten Kutzn
e
r
speed
up tuning
f
or large numbe
r
s of proce
s
ses
commit
|
commitdiff
|
tree
2010-06-24
Carst
e
n K
u
tzn
e
r
try to avoid wei
r
d PME/PP com
b
inations
in g_tune_pme
commit
|
commitdiff
|
tree
2010-06-22
Carst
e
n
Kutzner
g_tune_pme n
o
w also up
d
ates rlistlong etc
.
commit
|
commitdiff
|
tree
2010-06-21
Car
s
t
en K
u
tzner
g
_tune_pme: ad
d
optio
n
to c
h
oose
ho
w
n
procs
is passed
.
.
.
commit
|
commitdiff
|
tree
2010-06-17
Carsten Kutzner
Merge branch 'mas
t
e
r' of git
.
gromacs
.
org
:
groma
c
s
commit
|
commitdiff
|
tree
2010-06-17
Carsten Kut
z
ner
fixed tuning f
o
r
loadl
e
veler and updated it
t
o modified
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Carst
e
n Kutzner
fixed g
_
t
u
ne_pme for the
use with IBM's
poe
commit
|
commitdiff
|
tree
2010-06-08
Carsten Kutzner
fixed conti
n
u
a
t
ion runs wit
h
e
ssen
t
ial dy
n
a
mics
commit
|
commitdiff
|
tree
2010-06-04
C
a
rsten
K
utzner
removed to
d
o item
commit
|
commitdiff
|
tree
2010-06-04
C
a
rsten Kutzner
fixe
d
tuning
w
it
h
c
h
e
ckpo
i
n
t
files
commit
|
commitdiff
|
tree
2010-06-04
Carsten Ku
t
z
n
er
fixed
fil
e
appending for essential d
y
n
a
mics
out
p
ut
.
.
.
commit
|
commitdiff
|
tree
2010-06-04
Carsten Kutzne
r
fixed -deffnm option
for g_tun
e
_pm
e
commit
|
commitdiff
|
tree
2010-06-03
Cars
t
e
n
K
u
tzne
r
Enforced rot
a
t
i
o
n: ISO
,
I
SO-PF, PM
,
P
M-P
F
now have
.
.
.
commit
|
commitdiff
|
tree
2010-04-29
C
arsten Kutzner
Enforced rotatio
n
:
started to
imple
m
ent m
a
ss-weighted
.
.
.
commit
|
commitdiff
|
tree
2010-04-23
C
a
rste
n
Kut
z
ner
Merge bran
c
h 'ma
s
ter' of git
.
g
ro
m
a
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2010-04-23
C
arsten Kutzner
fixed s
e
gv's in gmx_cluster when u
s
ed with
xp
m
inpu
t
.
.
.
commit
|
commitdiff
|
tree
2010-03-29
Car
s
ten Kutzner
Note
commit
|
commitdiff
|
tree
2010-02-03
Carsten Kutzner
Up
d
ated edsam
.
h
commit
|
commitdiff
|
tree
2010-02-03
Carsten Kutzner
Removed useless cod
e
in dd_make_loc
a
l_group_indic
e
s
commit
|
commitdiff
|
tree
2010-02-02
Ca
r
sten Kutzner
Merge branch 'master' into ro
t
ati
o
n
commit
|
commitdiff
|
tree
2010-02-02
Car
s
ten Kutzner
Enforced rotation: removed
u
n
used
c
ode in readrot
.
c
commit
|
commitdiff
|
tree
2010-01-26
Carste
n
Kutzn
e
r
F
i
xed segv in make_
e
di
w
hen no reference structu
r
e
.
.
.
commit
|
commitdiff
|
tree
2010-01-26
Ca
r
sten
Kutzner
Fixed segv
i
n make_edi when n
o
referen
c
e st
r
u
c
ture
.
.
.
commit
|
commitdiff
|
tree
2010-01-21
Carsten
K
utzn
e
r
E
n
forced rotation: more rigorous
c
alculation of ref
.
.
.
commit
|
commitdiff
|
tree
2010-01-20
Ca
r
sten Kutzner
Enforced rotati
o
n: Deta
i
ls &
D
ocu
m
entation i
n
.
h
commit
|
commitdiff
|
tree
2010-01-19
Carsten
K
utzner
Merge
b
ra
n
ch 'm
a
ster' into rotati
o
n
commit
|
commitdiff
|
tree
2010-01-19
Cars
t
en Kutzne
r
Enforced r
o
tation
:
ad
d
e
d reference positions to tpr
.
.
.
commit
|
commitdiff
|
tree
2010-01-18
Carst
e
n Kutzn
e
r
Merg
e
branch 'master' into rot
a
tio
n
commit
|
commitdiff
|
tree
2010-01-18
Ca
r
sten Kutzner
Resubmitted
cha
n
g
es that
w
ere accid
e
ntally undone by
.
.
.
commit
|
commitdiff
|
tree
2010-01-15
Carsten Kutzner
Rem
o
ved unnecessary declar
a
tion
i
n
edsam
.
h
commit
|
commitdiff
|
tree
2010-01-15
Carsten Kutzner
Merge
br
a
nch 'mas
t
er
'
i
nto r
o
tation
commit
|
commitdiff
|
tree
2010-01-15
Carsten Kutzner
E
nf
o
rce
d
r
o
tat
i
on
:
us
e
gmx_angle to output angle o
f
.
.
.
commit
|
commitdiff
|
tree
2010-01-14
Carste
n
Kutzner
Enforc
e
d
rotation now uses the
rou
t
in
e
s in gr
o
upcoord
.
c
commit
|
commitdiff
|
tree
2010-01-13
Carsten Kutzner
Merge branch
'ma
s
ter' i
n
to rota
t
ion
commit
|
commitdiff
|
tree
2010-01-13
C
arst
e
n Kutzne
r
Merge branch
'
maste
r
' into
ro
t
ation
commit
|
commitdiff
|
tree
2010-01-13
C
arsten Kut
z
ner
Enforced
r
ot
a
tion: prepa
r
e pull_rotation t
o
be able
.
.
.
commit
|
commitdiff
|
tree
2010-01-13
Carsten Kutzner
Merge
b
ranch 'm
a
s
t
er' o
f
g
i
t@git
.
gromacs
.
org:groma
c
s
commit
|
commitdiff
|
tree
2010-01-13
Carste
n
Kut
z
ner
Moved r
o
u
t
ines
t
hat col
l
ect group
c
oords for comp
a
ris
o
n
.
.
.
commit
|
commitdiff
|
tree
2010-01-11
C
a
rsten Kutzner
E
nforced
rota
t
ion: F
i
xe
d
axis now
c
an fo
l
low the C
O
M
.
.
.
commit
|
commitdiff
|
tree
2009-12-21
C
a
r
sten Ku
t
zner
Merge branch 'master'
o
f git@git
.
gromacs
.
org
:
gromacs
commit
|
commitdiff
|
tree
2009-12-21
Carsten Kutzner
E
s
sential dynamics: fixed segfa
u
lt when using sd2
i
ntegrator
commit
|
commitdiff
|
tree
next