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2016-05-10	Mark Abraham	Minor update to sphinx dependency	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Facilitate linking with libcxx	commit \| commitdiff \| tree
2016-05-08	Mark Abraham	Fixes for clang 3.7 on PowerPC	commit \| commitdiff \| tree
2016-05-08	Mark Abraham	Fix constants, units and conversion factors	commit \| commitdiff \| tree
2016-04-27	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Replace libxml2 with tinyxml2 for use in test code	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Fix parse_digits_from_string	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Fix mdp label generation	commit \| commitdiff \| tree
2016-04-18	Mark Abraham	Reduce compilation coupling of SIMD module	commit \| commitdiff \| tree
2016-04-14	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-04-01	Mark Abraham	Revert to treating -1 as "generate a seed" in .mdp	commit \| commitdiff \| tree
2016-03-31	Mark Abraham	Add test and improved docs for custom checkSequence	commit \| commitdiff \| tree
2016-03-30	Mark Abraham	Clean up vsite code	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Add more const correctness	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Fix warning from GCC 6	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Improved some mdrun integration tests	commit \| commitdiff \| tree
2016-03-18	Mark Abraham	Warn about OpenMPI 1.8.6	commit \| commitdiff \| tree
2016-03-18	Mark Abraham	Fix typo in Fourier dihedral equation	commit \| commitdiff \| tree
2016-03-15	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-03-12	Mark Abraham	Update use of isnan in linearalgebra	commit \| commitdiff \| tree
2016-03-12	Mark Abraham	Find hwloc quietly if it's already been found	commit \| commitdiff \| tree
2016-03-11	Mark Abraham	Add infrastructure for tests to compare mdruns	commit \| commitdiff \| tree
2016-03-11	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-03-10	Mark Abraham	Require 2015 version for MSVC	commit \| commitdiff \| tree
2016-03-05	Mark Abraham	Add SETTLE unit tests	commit \| commitdiff \| tree
2016-02-26	Mark Abraham	Separated test of CDATA end tag handling from others	commit \| commitdiff \| tree
2016-02-23	Mark Abraham	Replace cppcheck suppression in checkpoint code	commit \| commitdiff \| tree
2016-02-22	Mark Abraham	Move init of specialized dynamical algorithms to do_md	commit \| commitdiff \| tree
2016-02-21	Mark Abraham	Separate table construction	commit \| commitdiff \| tree
2016-02-19	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-02-19	Mark Abraham	Make both ftp and http links for source download	commit \| commitdiff \| tree
2016-02-18	Mark Abraham	Updated reference manual text about PME tuning	commit \| commitdiff \| tree
2016-02-16	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-14	Mark Abraham	Re-generated eps for figure 4.8	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Re-remove *_stochd_state function declarations	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Improved update_coords handling of xprime	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Fix issues to update cppcheck support to 1.72	commit \| commitdiff \| tree
2016-02-08	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-06	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Bumped patch number to prepare for future 5.1.3 release	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Version 5.1.2	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix grompp not warning when .mdp values have wrong...	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix dEkin/dl handling with multiple ranks	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Fix use of __APPLE__ in OpenCL code	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Add OpenCL source file types to copyright checker	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Avoid FP exception	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Remove bNotLastFrame	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Add suggestions for updating binutils	commit \| commitdiff \| tree
2016-01-26	Mark Abraham	Fix default for GMX_USE_NVML	commit \| commitdiff \| tree
2016-01-25	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Fix duplicate LaTeX equation label	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Update references to HTML and online documentation	commit \| commitdiff \| tree
2016-01-14	Mark Abraham	Permit customized testing of grompp and mdrun	commit \| commitdiff \| tree
2016-01-13	Mark Abraham	Allowed NVML support to be toggled	commit \| commitdiff \| tree
2016-01-12	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-01-11	Mark Abraham	Improved update_coords	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Improve tpr header version handling	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Fix some mdrun header dependencies	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Avoid more C++ bindings for MPI	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Document how potential-switch works	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Stop using UNDEFINED as name of a symbol	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Remove fields used only for SD2	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Backport md-vv fixes	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Remove SD2 integrator	commit \| commitdiff \| tree
2016-01-06	Mark Abraham	Fix spurious gcc warning	commit \| commitdiff \| tree
2016-01-05	Mark Abraham	Fix logic for DD missing-interactions check	commit \| commitdiff \| tree
2016-01-05	Mark Abraham	Use EXPECT_TRUE and EXPECT_FALSE in new SIMD tests	commit \| commitdiff \| tree
2016-01-04	Mark Abraham	Change GMX_DOUBLE to be always defined	commit \| commitdiff \| tree
2015-12-28	Mark Abraham	Create invertmatrix.h	commit \| commitdiff \| tree
2015-12-28	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2015-12-27	Mark Abraham	Fix some OpenCL issues	commit \| commitdiff \| tree
2015-12-24	Mark Abraham	Moved responsibility for f_global	commit \| commitdiff \| tree
2015-12-24	Mark Abraham	Shell code cleanup	commit \| commitdiff \| tree
2015-12-17	Mark Abraham	Simplified energy-summation code	commit \| commitdiff \| tree
2015-12-12	Mark Abraham	Broke up copyright.*	commit \| commitdiff \| tree
2015-12-12	Mark Abraham	Require Nose-Hoover with MTTK	commit \| commitdiff \| tree
2015-12-11	Mark Abraham	Stop global communication depending on integrator	commit \| commitdiff \| tree
2015-12-10	Mark Abraham	Merge branch 'origin/release-5-1'	commit \| commitdiff \| tree
2015-12-09	Mark Abraham	Update use of preprocessor in managing GPU support	commit \| commitdiff \| tree
2015-12-08	Mark Abraham	Merge branch 'release-5-0' into release-5-1	commit \| commitdiff \| tree
2015-12-08	Mark Abraham	Fix Trotter integration	commit \| commitdiff \| tree
2015-12-03	Mark Abraham	Remove mdrun -compact	commit \| commitdiff \| tree
2015-12-02	Mark Abraham	Remove twin-range scheme	commit \| commitdiff \| tree
2015-11-30	Mark Abraham	Refactor hardware information management	commit \| commitdiff \| tree
2015-11-25	Mark Abraham	Fix logic of dd_print_missing_interactions exit	commit \| commitdiff \| tree
2015-11-24	Mark Abraham	Fix error in multi-sim communication	commit \| commitdiff \| tree
2015-11-23	Mark Abraham	Update and expand pre-submit commit matrix	commit \| commitdiff \| tree
2015-11-22	Mark Abraham	Fix generic group-scheme kernel table dereferencing	commit \| commitdiff \| tree
2015-11-20	Mark Abraham	Split wallcycle interface	commit \| commitdiff \| tree
2015-11-20	Mark Abraham	Remove ewcWAIT_GPU_NB_L_EST	commit \| commitdiff \| tree
2015-11-19	Mark Abraham	Simplified init and mdrun code	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Fix use of #if vs #ifdef	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Remove t_adress	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Fix AlignedAllocator with MSVC2015 debug mode	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Removed state_global from mdrun energy-summation	commit \| commitdiff \| tree
2015-11-16	Mark Abraham	Remove "support" for twin-range with VV integrators	commit \| commitdiff \| tree
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