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Import cmake Modules/FindCUDA.cmake
2017-11-10
Mark
A
braham
Impo
r
t cmake Modules/F
i
nd
C
UDA
.
c
m
a
k
e
commit
|
commitdiff
|
tree
2017-11-09
Mark Abraha
m
Pr
e
pared t_mdatom
s
for using vector
commit
|
commitdiff
|
tree
2017-11-09
Mark Abraham
Introd
u
ce Ho
s
tAllocat
i
onPolicy
commit
|
commitdiff
|
tree
2017-11-07
M
a
rk Abraham
Reform gmx
_
pme_pp alloc a
n
d use
vector
commit
|
commitdiff
|
tree
2017-11-07
Mar
k
Ab
r
aham
Int
r
o
d
uce
gmxopen
c
l
.
h
commit
|
commitdiff
|
tree
2017-11-07
Mark
A
braham
Test clang on
A
RM in nightly matrix
commit
|
commitdiff
|
tree
2017-11-07
Mark
Abraham
I
m
pro
v
e PME includes
commit
|
commitdiff
|
tree
2017-11-03
Mark Ab
r
aham
Merg
e
"Merge branch rele
a
se-2016"
commit
|
commitdiff
|
tree
2017-11-02
Ma
r
k Abraham
M
e
rge br
a
nch rel
e
a
se-2016
commit
|
commitdiff
|
tree
2017-11-01
Mark Ab
r
ah
a
m
Fix thread
-
MPI
rank choice for o
r
ientat
i
on re
s
traints
commit
|
commitdiff
|
tree
2017-11-01
M
a
rk Abraham
Improve handling of GPU ID
s
commit
|
commitdiff
|
tree
2017-10-31
M
ark Abraham
Up
d
ate treatment of GPU comp
a
tibility data structure
commit
|
commitdiff
|
tree
2017-10-30
Mar
k
Abraham
Fix and update hw
_
info
commit
|
commitdiff
|
tree
2017-10-27
Mark Abraham
Fix hw dete
c
tion mor
e
commit
|
commitdiff
|
tree
2017-10-26
Mark
A
braham
Make release matri
x
wo
r
k
again
commit
|
commitdiff
|
tree
2017-10-26
Mark Abraham
New quote
commit
|
commitdiff
|
tree
2017-10-25
M
a
r
k
Abraha
m
Teach
the copyright checker
about template
.
cpp
commit
|
commitdiff
|
tree
2017-10-20
Ma
r
k
Abraham
Cl
a
rify d
o
cs for Fmax in EM
commit
|
commitdiff
|
tree
2017-10-20
Mark
A
b
raham
M
e
rge branch release-2016
commit
|
commitdiff
|
tree
2017-10-16
Mark Abra
h
am
Merg
e
branc
h
release-2016
commit
|
commitdiff
|
tree
2017-10-13
M
a
rk Abr
a
ham
Update t
e
sts for C
+
+11 compile
r
and standar
d
libra
r
y
commit
|
commitdiff
|
tree
2017-10-13
Ma
r
k Abraham
Fix cpuinfo o
n
clang + non-
x
86
commit
|
commitdiff
|
tree
2017-10-11
Mark
Abraham
I
ntroduced header for communication to/from
PME
ranks
commit
|
commitdiff
|
tree
2017-10-11
Ma
r
k Abraham
Clean
e
d u
p
ew
a
l
dco
e
ff for PME-only ranks
commit
|
commitdiff
|
tree
2017-10-11
Mark Abraham
Use cla
n
g-5 i
n
J
e
nkins
commit
|
commitdiff
|
tree
2017-10-07
Mark Abra
h
a
m
Tell cppc
h
eck that
.
cpp and
.
cu files
a
re
c++
commit
|
commitdiff
|
tree
2017-10-05
M
a
rk Abraha
m
Continue removing -nb gpu
_
cpu
commit
|
commitdiff
|
tree
2017-10-04
Mar
k
A
b
raham
Enable group
-
sche
m
e SIMD
w
ith GM
X
_SIMD=AVX2_128
commit
|
commitdiff
|
tree
2017-10-03
Mark A
b
r
a
h
am
Int
r
oduce and use AlignedAllocationP
o
licy
commit
|
commitdiff
|
tree
2017-09-19
Mark Abra
h
a
m
Updat
e
testing
m
atrices to
t
est with (
l
a
t
e
st) icc-18
commit
|
commitdiff
|
tree
2017-09-17
Mark Abraham
Merge branch release-2016
commit
|
commitdiff
|
tree
2017-09-15
M
a
rk Abraham
E
x
press intent of matrix release build ty
p
es
e
xp
l
icit
l
y
commit
|
commitdiff
|
tree
2017-09-15
M
a
rk Abrah
a
m
Bumpe
d
p
a
tc
h
ver
s
io
n
for ne
x
t release
commit
|
commitdiff
|
tree
2017-09-15
Mark Abraham
Versi
o
n 2016
.
4
commit
|
commitdiff
|
tree
2017-09-14
Mark Abraham
Form t
a
skassignmen
t
module
commit
|
commitdiff
|
tree
2017-09-14
Mark Abraham
Fix compat m
o
dul
e
de
f
init
i
on
commit
|
commitdiff
|
tree
2017-09-12
M
a
r
k Abraham
M
erge branch release-2016
commit
|
commitdiff
|
tree
2017-09-07
Mark Abraham
Introd
u
ce type-safe GPU emulation varia
b
les
commit
|
commitdiff
|
tree
2017-09-07
Mark Abraham
Enable g
r
oup-scheme SIMD k
e
rn
e
ls on rece
n
t
A
V
X e
x
t
e
n
s
ions
commit
|
commitdiff
|
tree
2017-09-06
Mark Abraha
m
Prepare Verlet scheme la
t
er in runner
commit
|
commitdiff
|
tree
2017-09-05
Mark Abraham
Fix
e
s for Solaris
commit
|
commitdiff
|
tree
2017-09-05
Mark
Ab
r
a
ham
Fix use
o
f
G
P
U
i
nformation for thread
-
MPI setu
p
commit
|
commitdiff
|
tree
2017-09-03
Mark
A
braham
Fix compiler flags for
usin
g
MKL
commit
|
commitdiff
|
tree
2017-09-03
Mark Abra
h
am
M
er
g
e
branc
h
rel
e
ase-5-1 into
r
elease-2016
commit
|
commitdiff
|
tree
2017-08-25
Mark
A
braham
F
i
x flat-bott
o
med position
r
estraints with mult
i
ple
.
.
.
commit
|
commitdiff
|
tree
2017-08-23
Ma
r
k Abraham
Stoppe
d
ch
e
ckpo
i
n
t
i
nfluencin
g
parallelism setup
commit
|
commitdiff
|
tree
2017-08-22
M
ark
A
b
raham
Run GPU d
e
te
c
tion eve
n
for md
r
un -nb cpu
commit
|
commitdiff
|
tree
2017-08-22
Mark Ab
r
aham
F
ixed threa
d
-MPI with
n
o
n-
d
efa
u
l
t -npm
e
commit
|
commitdiff
|
tree
2017-08-22
Mark Abraham
F
i
x missing declaration of GMX_
U
NUSED_VALUE
commit
|
commitdiff
|
tree
2017-08-22
Mark
A
bra
h
am
Me
r
ge br
a
nch release-2016
commit
|
commitdiff
|
tree
2017-08-21
Mark Abraham
Mov
e
d increase_nst
l
ist() to nbnxn_tun
i
ng
.
h
commit
|
commitdiff
|
tree
2017-08-21
Mark Abrah
a
m
Fix compi
l
ation i
s
sues with A
R
M
SIMD
commit
|
commitdiff
|
tree
2017-08-17
Mark Abraham
Repl
a
ce consis
t
ency checking with
as
s
ertion
commit
|
commitdiff
|
tree
2017-08-16
Mark Abraham
Parse u
s
er-supplied GPU task assig
n
ment only when
n
eeded
commit
|
commitdiff
|
tree
2017-08-16
Mark
Ab
r
aham
Remove duplica
t
e GPU no
n
-u
s
age hi
n
t
commit
|
commitdiff
|
tree
2017-08-16
M
ark Abraham
Moved logging func
t
ion
a
l
ity i
n
to GPU us
a
g
e report
commit
|
commitdiff
|
tree
2017-08-15
M
a
rk Abr
a
h
am
Merge b
r
anch
r
elease-5-1 into rel
e
a
se-2016
commit
|
commitdiff
|
tree
2017-08-15
Mark Abraham
Fix
v
alu
e
o
f
E
wald shif
t
commit
|
commitdiff
|
tree
2017-08-10
Mar
k
A
b
raham
Clari
f
y
d
ata f
l
o
w
in GPU task assignment
commit
|
commitdiff
|
tree
2017-08-07
Mark Abraham
Fix
includ
e
dependency for getenv
commit
|
commitdiff
|
tree
2017-08-07
Mark Abraham
Simpl
i
fied handling of GPU device ID
s
commit
|
commitdiff
|
tree
2017-08-06
M
a
rk Abraham
S
i
mplify resou
r
ce-d
i
vision effi
c
i
enc
y
check
commit
|
commitdiff
|
tree
2017-08-06
Ma
r
k Abra
h
a
m
Spli
t
p
rinthardware from d
e
tecthard
w
are
commit
|
commitdiff
|
tree
2017-08-06
M
ark Abra
h
am
Decouple task assignment from
t
ask execution
commit
|
commitdiff
|
tree
2017-08-06
M
a
rk Abraha
m
Removed unused host-
s
ide allocation co
d
e
commit
|
commitdiff
|
tree
2017-08-04
Mark
Abraham
Stop using h
w
info_g for
rep
o
rting code
commit
|
commitdiff
|
tree
2017-08-03
Ma
r
k Abraham
Removed u
n
us
e
d include sta
t
ements
commit
|
commitdiff
|
tree
2017-08-01
M
a
r
k
A
braham
Introduced M
d
runner
h
i
gh-level cl
a
ss
commit
|
commitdiff
|
tree
2017-07-27
Mark Abraham
Enhance cmake and releng handling
o
f GMX
_
USE_RDTSCP
commit
|
commitdiff
|
tree
2017-07-24
Mark Abraham
Separate
d
re
s
po
n
sibility for co
n
sistency chec
k
i
n
g
commit
|
commitdiff
|
tree
2017-07-24
M
a
rk Abraham
Remov
e
unnecessary
GPU c
h
ecki
n
g co
d
e
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Cl
e
aned up bUse
G
pu i
n
r
u
n
n
er
commit
|
commitdiff
|
tree
2017-07-20
Mark Abr
a
ha
m
Stop duplicate printing of detected
GPUs
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Fix use of
GMX_SIMD
in ow
n
-fftw b
u
ild
commit
|
commitdiff
|
tree
2017-07-19
M
a
rk Abraham
Mad
e
post-subm
i
t config to t
e
st clang+openmp
.
commit
|
commitdiff
|
tree
2017-07-19
Mark Abrah
a
m
I
m
prove CMake i
m
plementa
t
ion fo
r
GM
X
_
S
IMD
commit
|
commitdiff
|
tree
2017-07-18
M
a
r
k
Abraham
C
o
n
verted some cons
t
p
ointers into co
n
st referenc
e
s
.
.
.
commit
|
commitdiff
|
tree
2017-07-18
Mark Abraham
Eliminated pick_nbnxn
_
resources
commit
|
commitdiff
|
tree
2017-07-14
M
a
r
k
Ab
r
aham
I
mplemented grompp
-
po fo
r
options-style md
p
handling
commit
|
commitdiff
|
tree
2017-07-14
Mark Abraham
Clean up cma
k
e bu
i
ld host
d
etection
commit
|
commitdiff
|
tree
2017-07-13
Mark Abrah
a
m
Clean up gmx_mdrun(
)
commit
|
commitdiff
|
tree
2017-07-13
Mark
Abra
h
am
Cleaned up mdrunner_start_threads
commit
|
commitdiff
|
tree
2017-07-13
Mark Abraham
More updates t
o
tes
t
in
g
matrix
commit
|
commitdiff
|
tree
2017-07-07
Mark
Abraham
Refactor e
r
ror handl
i
ng in init_gpu
commit
|
commitdiff
|
tree
2017-07-06
M
a
r
k Abraham
Simplify gmx_gp
u
_opt_t
commit
|
commitdiff
|
tree
2017-07-04
Mar
k
Abraham
Clean up
p
i
ck_nbnxn_re
s
ources
commit
|
commitdiff
|
tree
2017-07-01
Mark Abraha
m
Clea
n
ed up GP
U
emulation logic
commit
|
commitdiff
|
tree
2017-06-28
Mark
Abraham
Cleaned
up
h
i
g
h
-l
e
v
el
boolean variable nami
n
g
commit
|
commitdiff
|
tree
2017-06-28
Mark
Ab
r
aham
Fix
s
pecification for
gcc
-
6
commit
|
commitdiff
|
tree
2017-06-28
M
ark Abraham
Merge branch r
e
leas
e
-2016
commit
|
commitdiff
|
tree
2017-06-27
Mark
Abraha
m
Minor improvements t
o
test confi
g
s
commit
|
commitdiff
|
tree
2017-06-22
Mark Abrah
a
m
Con
s
olidated
l
o
g
ic f
o
r ch
o
osing number of thread-MPI
.
.
.
commit
|
commitdiff
|
tree
2017-06-22
Mark
A
b
raham
Rep
l
ace misnam
e
d nbnxn_gpu_acceleration_sup
p
orted
commit
|
commitdiff
|
tree
2017-06-22
Ma
r
k
A
b
raham
Consolidate
and fix l
o
gic for m
d
ru
n
-nb
a
nd -gpuid
commit
|
commitdiff
|
tree
2017-06-21
Mark Abraham
Reform ngpu variable
commit
|
commitdiff
|
tree
2017-06-21
Mark Abraham
R
emove bUser
S
etGpuIds field
commit
|
commitdiff
|
tree
2017-06-14
Mark A
b
raham
Simplify r
e
porting
from i
n
it_g
p
u
commit
|
commitdiff
|
tree
2017-06-12
Mark Abraha
m
M
ove gm
x
_parse_gpu_id out of chec
k
ing func
t
i
o
n
commit
|
commitdiff
|
tree
2017-05-31
Mark Abraham
N
e
w
q
uote
commit
|
commitdiff
|
tree
2017-05-30
Mark
A
bra
h
am
Fix
N
V
ML e
r
ror mess
a
ge
s
commit
|
commitdiff
|
tree
next