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Import cmake Modules/FindCUDA.cmake
2017-11-09
Aleksei Iup
i
nov
Ren
a
me
synchronous GPU t
r
a
nsfer f
u
nctions to mat
c
h
.
.
.
commit
|
commitdiff
|
tree
2017-11-02
Ale
k
sei Iupinov
Replac
e
math
.
h
b
y
cmath in
c
lu
d
es in
c
pp files
commit
|
commitdiff
|
tree
2017-11-01
Aleksei Iupinov
Re
m
ove
u
nuse
d
PME
GPU d
e
c
la
r
a
t
ions
commit
|
commitdiff
|
tree
2017-11-01
Aleksei Iupin
o
v
Move pme_
g
pu_finish_computation() documentation to
.
.
.
commit
|
commitdiff
|
tree
2017-11-01
A
l
eks
e
i Iupinov
Fix er
r
one
o
u
s
PME G
P
U
"
step"
n
amings
commit
|
commitdiff
|
tree
2017-11-01
Aleksei
Iup
i
n
o
v
Simplify PME
G
P
U synchro
n
iza
t
ion code
commit
|
commitdiff
|
tree
2017-10-31
Aleksei Iupinov
Reuse
epbcX
Y
log
i
c
commit
|
commitdiff
|
tree
2017-10-30
A
l
e
k
sei
I
up
i
nov
Fi
x
refer
e
n
ce
mode build unused function warning
s
commit
|
commitdiff
|
tree
2017-10-30
Alek
s
ei Iupi
n
ov
Bring
P
ME GPU/C
U
DA intern
a
l structure na
m
e
s to Ca
m
elCase
commit
|
commitdiff
|
tree
2017-10-30
Aleksei
Iupino
v
Use new/delete for gmx_pme_
t
commit
|
commitdiff
|
tree
2017-10-30
Aleksei
Iupinov
S
i
mplif
y
PM
E
data handl
i
ng in
r
u
nner
commit
|
commitdiff
|
tree
2017-10-29
Alek
s
ei Iupi
n
o
v
Mak
e
PME tuning logic
m
or
e
readable
commit
|
commitdiff
|
tree
2017-10-27
A
le
k
sei
I
u
pino
v
Remove u
n
used PME grid dump
d
ebug
f
u
nct
i
o
n
s
commit
|
commitdiff
|
tree
2017-10-27
A
l
eksei Iupinov
R
e
place
a
few a
s
ser
t
s w
i
t
h
GMX_ASSERT's
commit
|
commitdiff
|
tree
2017-10-27
Alek
s
ei Iupin
o
v
Remove defu
n
ct PME i
n
itialization error code return
commit
|
commitdiff
|
tree
2017-10-24
Ale
k
sei
I
u
pinov
R
emove du
p
lica
t
e/outdated
fun
c
tion
decla
r
ation
commit
|
commitdiff
|
tree
2017-10-24
Al
e
ksei Iupinov
Move commrec duty checking into s
i
mpl
e
gette
r
s
commit
|
commitdiff
|
tree
2017-10-23
Alekse
i
Iu
p
in
o
v
Co
r
rect the page
a
llocato
r
descr
i
ption
commit
|
commitdiff
|
tree
2017-10-22
A
leksei
Iupino
v
Change P
M
E GPU g
a
ther reduction argu
m
ent from b
o
o
l
ean
.
.
.
commit
|
commitdiff
|
tree
2017-10-21
Aleksei
Iupin
o
v
A
dd
c
alls to the PM
E
GPU stages
commit
|
commitdiff
|
tree
2017-10-13
Al
e
ksei Iupi
n
ov
Rel
a
x PME
s
pline comput
a
ti
o
n toler
a
nce in d
o
uble precision
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
A
l
eksei Iupino
v
Remov
e
us
e
less
ex
t
ern CUDA texture
reference
declarations
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
Al
e
k
s
ei Iupinov
Reve
r
t "Drop N
B
_ fr
o
m GMX
_
CUDA_NB_SINGLE_COMPILATION_U
N
IT
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Aleksei
I
upinov
F
ix clang warnings for PME
CU
D
A
k
e
rnels
commit
|
commitdiff
|
tree
2017-10-11
Al
e
ksei I
u
pi
n
ov
Relax
P
ME solving test complex g
r
id tolerance
commit
|
commitdiff
|
tree
2017-10-11
Aleks
e
i Iu
p
ino
v
CUDA 9/Vo
l
t
a
support for
PME
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupin
o
v
PM
E
solvi
n
g - CUDA k
e
r
nel +
unit
tests
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iu
p
inov
PME for
c
e gathe
r
i
ng - CUDA k
e
rne
l
+ unit tests
commit
|
commitdiff
|
tree
2017-10-11
A
lekse
i
Iup
i
nov
Drop
N
B_
fr
o
m GMX_
C
UDA_NB_SINGLE_COMPILATION_UNIT cma
k
e
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
s
ei Iupinov
PME s
p
line+spread
C
U
DA
k
e
rne
l
and unit t
e
sts
commit
|
commitdiff
|
tree
2017-10-09
Alek
s
ei
Iupinov
Re
m
ove some u
n
n
e
c
e
ssar
y
includes from PM
E
commit
|
commitdiff
|
tree
2017-10-09
Aleksei
I
upinov
PME
G
PU/CUDA da
t
a
framew
o
rk
.
commit
|
commitdiff
|
tree
2017-10-06
Alek
s
ei Iupinov
A
dd tim
i
n
g
accumulati
o
n capab
i
lity into G
p
uRegionTimer
commit
|
commitdiff
|
tree
2017-10-04
Aleksei Iupinov
Rem
o
ve G
P
U tim
i
ng functions superseded by GpuRegionTimer
commit
|
commitdiff
|
tree
2017-10-04
Aleksei Iupinov
A
dd GpuRegionTim
e
r
c
lass
commit
|
commitdiff
|
tree
2017-10-03
Aleksei Iupinov
Bring CUDA texture getters document
a
tion up-to-date
commit
|
commitdiff
|
tree
2017-10-03
Aleksei
I
upi
n
ov
T
e
m
p
late/move CUDA te
x
ture
c
le
a
n
u
p code from
N
B
C
UDA
.
.
.
commit
|
commitdiff
|
tree
2017-10-03
Aleksei
Iupi
n
ov
Add WinAPI
p
age size que
r
y
for al
l
ocator purposes
commit
|
commitdiff
|
tree
2017-09-26
Aleksei Iup
i
nov
Move CUDA
tex
t
ure setup code from NB CUDA
module
to
.
.
.
commit
|
commitdiff
|
tree
2017-09-22
A
l
eksei Iupin
o
v
Temp
l
ate the
C
UDA texture setup cod
e
on ra
w
value type T
commit
|
commitdiff
|
tree
2017-09-21
A
leksei Iupinov
Eliminate unused
C
o
ul
o
mb correc
t
ion table size c
o
ulomb_tab_size
commit
|
commitdiff
|
tree
2017-09-21
Al
e
ksei Iupinov
Eliminate
d
u
plicate CUDA tex
t
ure setup code
commit
|
commitdiff
|
tree
2017-09-18
Aleksei Iupino
v
Skip GPU reallocation o
f
an
empty non-
l
ocal pairlis
t
commit
|
commitdiff
|
tree
2017-09-14
Aleks
e
i Iupinov
F
i
x non-SIMD bui
l
d failing
commit
|
commitdiff
|
tree
2017-09-12
Aleks
e
i Iupinov
Pre
v
e
n
t refe
r
ence XML reader
s
egfault on
n
ullptr error
.
.
.
commit
|
commitdiff
|
tree
2017-09-04
Aleksei Iupinov
Merg
e
"Me
r
g
e
b
r
anch release-5-1 int
o
release-2016"
.
.
.
commit
|
commitdiff
|
tree
2017-08-31
Alek
s
ei Iupin
o
v
B
ring
b
ack
s
pace lo
s
t in commi
t
e
4
3
e83bf
commit
|
commitdiff
|
tree
2017-08-29
Aleks
e
i
Iupinov
Remove lef
t
over
function d
e
c
l
aration
commit
|
commitdiff
|
tree
2017-08-29
Aleksei Iu
p
inov
Fix typo
commit
|
commitdiff
|
tree
2017-08-29
Aleksei Iu
p
i
nov
Allow passing op
t
ional
width argument
i
nto CUDA shuf
f
le
.
.
.
commit
|
commitdiff
|
tree
2017-08-29
Al
e
k
s
ei Iupinov
Adjus
t
PME LJ solver test input coeffic
i
ent
commit
|
commitdiff
|
tree
2017-08-22
Aleksei
Iu
p
inov
Separate P
M
E spread and
g
a
the
r
wallc
y
c
l
e counters
commit
|
commitdiff
|
tree
2017-08-21
Aleksei Iu
p
inov
P
ME
s
o
l
ving tests
commit
|
commitdiff
|
tree
2017-08-17
Aleksei Iup
i
nov
M
e
r
ge "Merge branch r
e
lease-5-1 into release
-
2016"
.
.
.
commit
|
commitdiff
|
tree
2017-06-30
Aleksei Iupinov
Remove
o
utd
a
ted cm
a
ke nvcc
l
og
i
c
commit
|
commitdiff
|
tree
2017-06-12
Al
e
ks
e
i Iupinov
St
o
r
e
a physical node com
m
unicator in t_commrec
commit
|
commitdiff
|
tree
2017-03-17
Ale
k
sei Iupinov
Fix derefere
n
cing
n
ullptr in PME solve work dest
r
u
c
tor
commit
|
commitdiff
|
tree
2017-03-03
Aleksei Iupi
n
ov
Rem
o
v
e
outd
a
t
e
d CUD
A
vers
i
o
n che
c
k
commit
|
commitdiff
|
tree
2017-02-21
Ale
k
sei Iupinov
Remove u
n
used funct
i
on cu_synchstream_atdat()
commit
|
commitdiff
|
tree
2017-02-09
Aleksei Iupino
v
Add
i
n
itializa
t
i
on to dvdla
m
bda in
b
on
d
ed for
c
e
s tests
commit
|
commitdiff
|
tree
2017-02-09
Aleks
e
i
I
upinov
Fix typo
(Dih
e
darl -> Dihedral)
commit
|
commitdiff
|
tree
2017-02-08
Aleksei
Iupi
n
ov
P
ME force gather
i
n
g
t
e
s
ts
commit
|
commitdiff
|
tree
2017-02-08
Aleksei Iupinov
F
i
x i
n
va
l
id
t
riclinic box in the PME
te
s
t data
commit
|
commitdiff
|
tree
2017-01-24
A
l
eksei
I
upinov
PME spline computation and charge spread
i
ng te
s
ts
commit
|
commitdiff
|
tree
2017-01-24
Aleksei I
u
pinov
Add const
q
ualifier to s
o
me PME spread arguments
commit
|
commitdiff
|
tree
2017-01-19
Ale
k
sei Iu
p
inov
Simplify gmx_count_gp
u
_dev_unique()
commit
|
commitdiff
|
tree
2017-01-19
A
leksei
Iupinov
PME B-Spline moduli
c
o
m
p
u
tation uni
t
te
s
t
commit
|
commitdiff
|
tree
2017-01-05
Aleks
e
i
I
upi
n
ov
Fix
c
o
mpilation with CMAKE_CXX_FLAGS="-Wa
l
l -Werror"
commit
|
commitdiff
|
tree
2016-12-22
Aleks
e
i Iupinov
Remove u
n
u
s
ed m
e
mber th
r
e
ad_one from the PM
E
spline
.
.
.
commit
|
commitdiff
|
tree
2016-12-05
A
leks
e
i Iupinov
S
top
including para
l
lel_3dfft
.
h i
n
headers
commit
|
commitdiff
|
tree
2016-12-01
Aleksei Iupinov
Move G
P
U ass
i
gnment functions into a separat
e
file
commit
|
commitdiff
|
tree
2016-11-21
Aleksei Iupinov
Move hard
c
o
d
ed
P
M
E gr
i
d indexing consta
n
ts into header
commit
|
commitdiff
|
tree
2016-11-01
Alekse
i
Iupinov
Rem
o
ve im
a
tr
i
x type
and
related un
u
s
ed/er
r
oneou
s
code
commit
|
commitdiff
|
tree
2016-10-24
Aleksei Iupinov
Treat CUDA
files as C++ d
u
r
i
n
g cppcheck
commit
|
commitdiff
|
tree
2016-10-10
Ale
k
sei Iupino
v
Fix trivia
l
PME m
e
mory le
a
ks
commit
|
commitdiff
|
tree
2016-09-15
Aleksei Iupinov
Mo
v
e the PME Ewald c
o
effi
c
ients to the
P
ME structur
e
commit
|
commitdiff
|
tree
2016-09-10
A
l
ekse
i
Iupinov
Fix PME
d
a
ta
d
e
s
tructor not
b
eing called
commit
|
commitdiff
|
tree