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2016-01-29	Berk Hess	Add check for double perturbation	commit \| commitdiff \| tree
2016-01-29	Berk Hess	Fix LINCS triangle constraint thread issue	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Add OpenCL source file types to copyright checker	commit \| commitdiff \| tree
2016-01-28	Berk Hess	Update pair-list buffer manual	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Add suggestions for updating binutils	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Fix duplicate LaTeX equation label	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix exact continuation from non-energy steps	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy file continuation with md-vv	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Update references to HTML and online documentation	commit \| commitdiff \| tree
2016-01-24	Teemu Murtola	Document limitations on 32-bit Linux	commit \| commitdiff \| tree
2016-01-24	Berk Hess	Fix energy average with continuation	commit \| commitdiff \| tree
2016-01-13	Mark Abraham	Allowed NVML support to be toggled	commit \| commitdiff \| tree
2016-01-08	Berk Hess	Fix PME load balancing skipping a setup	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Document how potential-switch works	commit \| commitdiff \| tree
2015-12-26	Szilard Pall	Improve documentation on OpenCL issue with NVIDIA	commit \| commitdiff \| tree
2015-12-12	Mark Abraham	Require Nose-Hoover with MTTK	commit \| commitdiff \| tree
2015-12-12	Christoph Junghans	AdResS: lost performance tweak	commit \| commitdiff \| tree
2015-12-11	Mark Abraham	Stop global communication depending on integrator	commit \| commitdiff \| tree
2015-11-14	Mark Abraham	Fix walltime measurement with bgclang	commit \| commitdiff \| tree
2015-11-02	Berk Hess	Fix intermolecular interactions with small mols	commit \| commitdiff \| tree
2015-11-02	Szilard Pall	Fix signal type	commit \| commitdiff \| tree
2015-10-24	Szilard Pall	Avoid using incompatible NVML version	commit \| commitdiff \| tree
2015-10-22	Szilard Pall	Quiet FindNVML	commit \| commitdiff \| tree
2015-10-22	Teemu Murtola	Use include_directories(SYSTEM ...) consistently	commit \| commitdiff \| tree
2015-10-22	Erik Lindahl	Merge "Merge release-5-0 into release-5-1" into release-5-1	commit \| commitdiff \| tree
2015-10-19	Mark Abraham	Fix cycle subcounters	commit \| commitdiff \| tree
2015-10-18	Justin Lemkul	Removed dihedrals from GLY .rtp entry.	commit \| commitdiff \| tree
2015-10-15	Szilárd Páll	Correct CUDA version comparisons	commit \| commitdiff \| tree
2015-10-12	Michael Shirts	Fix for lack of COM removal for md-vv	commit \| commitdiff \| tree
2015-10-03	Mark Abraham	Fix FindFFTW behaviour	commit \| commitdiff \| tree
2015-10-03	Mark Abraham	Fix mdrun -nb auto -rerun with GPU and energy groups	commit \| commitdiff \| tree
2015-10-02	Teemu Murtola	Fix -seltype option for C++ tools	commit \| commitdiff \| tree
2015-10-02	Carsten Kutzner	Fixed a bug in computational electrophysiology with DD	commit \| commitdiff \| tree
2015-09-06	Mark Abraham	Add GROMACS 5 paper to paper lists	commit \| commitdiff \| tree
2015-08-13	Mark Abraham	Make it easier to find selection help	commit \| commitdiff \| tree
2015-08-13	Mark Abraham	Documentation fixes	commit \| commitdiff \| tree
2015-08-13	Szilard Pall	add clFlush to kick of OpenCL work	commit \| commitdiff \| tree
2015-08-13	Mark Abraham	Avoid FP exception with empty .mdp file	commit \| commitdiff \| tree
2015-08-12	Mark Abraham	Add to author lists	commit \| commitdiff \| tree
2015-08-12	Erik Lindahl	Prevent AMD OpenCL on OS X prior to 10.10.4	commit \| commitdiff \| tree
2015-08-11	Erik Lindahl	Fix for processors being offline on Arm	commit \| commitdiff \| tree
2015-08-10	James W. Barnett	Fix some stuff in user and install guide	commit \| commitdiff \| tree
2015-08-10	Mark Abraham	Require tune_pme to take -mdrun parameter	commit \| commitdiff \| tree
2015-08-08	James W. Barnett	Fix some phrases that were not appearing in manual	commit \| commitdiff \| tree
2015-08-06	Mark Abraham	Fix FindNVML.cmake	commit \| commitdiff \| tree
2015-08-06	Erik Lindahl	Avoid using C++11-specific data() of std::vector	commit \| commitdiff \| tree
2015-08-06	Mark Abraham	Fix thread-affinity checking	commit \| commitdiff \| tree
2015-08-05	Mark Abraham	Fix em dash in new reference	commit \| commitdiff \| tree
2015-08-03	Mark Abraham	Fix use of wrongly-named GCC minor-version variable	commit \| commitdiff \| tree
2015-07-26	Mark Abraham	Stop mdrun printing potentially undefined value	commit \| commitdiff \| tree
2015-07-19	Mark Abraham	Update advice about grompp -t	commit \| commitdiff \| tree
2015-07-17	Erik Lindahl	Fix incorrect warning about only using single core	commit \| commitdiff \| tree
2015-07-15	Carsten Kutzner	Removed information about obsolete .edo file format	commit \| commitdiff \| tree
2015-07-14	James W. Barnett	Update example old mdp file in user guide.	commit \| commitdiff \| tree
2015-07-08	Mark Abraham	Give bTypePerturbed a valid initial value	commit \| commitdiff \| tree
2015-07-08	Mark Abraham	Fix grompp .edr IO estimate for free-energy calcs	commit \| commitdiff \| tree
2015-07-05	Berk Hess	Fix bug in GPU list balancing	commit \| commitdiff \| tree
2015-07-04	Berk Hess	Obey OpenMP thread count limit with tMPI	commit \| commitdiff \| tree
2015-07-04	Berk Hess	Fix two PME DLB trigger issues	commit \| commitdiff \| tree
2015-07-03	Mark Abraham	Fix ThreadMPI GPU assumptions	commit \| commitdiff \| tree
2015-07-03	Berk Hess	Correct grompp pull warning message	commit \| commitdiff \| tree
2015-07-02	Szilard Pall	Fix OpenCL compilation errors.	commit \| commitdiff \| tree
2015-07-02	Teemu Murtola	Remove status messages about Sphinx detection	commit \| commitdiff \| tree
2015-06-30	Mark Abraham	Document how to add and use NVML support	commit \| commitdiff \| tree
2015-06-30	Mark Abraham	Avoid GPU data race also with OpenCL	commit \| commitdiff \| tree
2015-06-30	Berk Hess	enabled 1 PP + 1 PME node	commit \| commitdiff \| tree
2015-06-30	Berk Hess	Add checks for inefficient resource usage	commit \| commitdiff \| tree
2015-06-30	Mark Abraham	Add support for flushing WDDM queue	commit \| commitdiff \| tree
2015-06-29	Mark Abraham	Merge "Merge branch release-5-0"	commit \| commitdiff \| tree
2015-06-29	Erik Lindahl	Fix OS X openCL builds	commit \| commitdiff \| tree
2015-06-29	Erik Lindahl	Fix bugs in gmx dos	commit \| commitdiff \| tree
2015-06-29	Erik Lindahl	Replace functions deprecated in OpenCL 1.2	commit \| commitdiff \| tree
2015-06-29	Teemu Murtola	Only accept exact matches for selection keywords	commit \| commitdiff \| tree
2015-06-29	anca	Implement OpenCL support	commit \| commitdiff \| tree
2015-06-29	Mark Abraham	Add MSAN build type	commit \| commitdiff \| tree
2015-06-29	Erik Lindahl	Fix bug removing multiple dihedrals in main rtp entries	commit \| commitdiff \| tree
2015-06-29	Teemu Murtola	Make some unit tests skip file system access	commit \| commitdiff \| tree
2015-06-29	Erik Lindahl	Removed gmx protonate tool	commit \| commitdiff \| tree
2015-06-29	Berk Hess	Improve DLB+PME tuning with GPUs	commit \| commitdiff \| tree
2015-06-28	Erik Lindahl	Fix double precision reference SIMD and gcc bug	commit \| commitdiff \| tree
2015-06-28	Erik Lindahl	Fix one error and compiler warnings with Cuda & clang-3.6	commit \| commitdiff \| tree
2015-06-28	Peter Kasson	Append _pullx_ and _pullf to pull files when -deffnm...	commit \| commitdiff \| tree
2015-06-28	Roland Schulz	Remove unused cmake files	commit \| commitdiff \| tree
2015-06-28	Roland Schulz	Don't use check_library for libm	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Improved the intra-GPU load balancing	commit \| commitdiff \| tree
2015-06-27	Szilard Pall	Fix CUDA architecture dependent issues	commit \| commitdiff \| tree
2015-06-27	Erik Lindahl	Fix IBM VSX SIMD compiles with xlc	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Reduce the use of nbnxn_consts.h	commit \| commitdiff \| tree
2015-06-27	Berk Hess	Corrected nstcalclr/nstfep/nst_repl_ex checks	commit \| commitdiff \| tree
2015-06-27	Erik Lindahl	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
2015-06-27	Teemu Murtola	Document tool changes in 5.1	commit \| commitdiff \| tree
2015-06-26	Erik Lindahl	Fix compile issues on K computer	commit \| commitdiff \| tree
2015-06-26	Berk Hess	Fixed Verlet buffer issue with 2-wide SIMD	commit \| commitdiff \| tree
2015-06-26	Erik Lindahl	Fix buffer size issues in string database	commit \| commitdiff \| tree
2015-06-26	Mark Abraham	Fix mdrun -confout sometimes affecting final .edr frame	commit \| commitdiff \| tree
2015-06-25	Berk Hess	Intermolecular bonded interaction support added	commit \| commitdiff \| tree
2015-06-25	Szilard Pall	Add missing macro undef in CUDA NB kernel	commit \| commitdiff \| tree
2015-06-25	Roland Schulz	Fix Wundef warnings	commit \| commitdiff \| tree
2015-06-25	Teemu Murtola	Move documentation on tool changes from wiki	commit \| commitdiff \| tree
2015-06-25	Mark Abraham	Merge "Merge release-5-0 into master"	commit \| commitdiff \| tree
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