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Improve handling of gmock and gcc6
2016-07-29
Mark Abr
a
ham
Impro
v
e
h
andling
of g
m
oc
k
an
d
gcc6
commit
|
commitdiff
|
tree
2016-07-28
M
ark
A
braham
A
dd t
o
olchain fl
a
gs
for S
S
E2
c
ompi
l
ation
commit
|
commitdiff
|
tree
2016-07-14
Mark Abraham
F
ix iss
u
es with using i
n
t
f
o
r
nu
m
ber of steps
commit
|
commitdiff
|
tree
2016-07-12
Mark Abraham
Fix trr
mag
i
c n
u
mber
r
e
ading
commit
|
commitdiff
|
tree
2016-07-11
Mark Abraham
F
i
x
gmx mdrun -membed
-
ntmpi -1
commit
|
commitdiff
|
tree
2016-07-11
M
a
rk Abraham
F
i
x
r
e
gre
s
siontest
d
o
wnload md5
s
um
commit
|
commitdiff
|
tree
2016-07-09
Mark Abraham
First 2016 rel
e
as
e
can
d
idate
commit
|
commitdiff
|
tree
2016-07-08
M
a
r
k
A
b
raham
Mer
g
e branc
h
release
-
5-1 into re
l
e
a
se-2016
commit
|
commitdiff
|
tree
2016-07-08
M
a
rk
A
braham
Simplify S
I
MD comp
i
ler flag co
n
struction
commit
|
commitdiff
|
tree
2016-07-07
Mark
A
bra
h
am
Move
consistency ch
e
ck
f
or number of threads
commit
|
commitdiff
|
tree
2016-07-07
Mark Abraham
Fix build
i
f
l
ibcuda is
f
ound b
u
t
nvcc
i
s
not
commit
|
commitdiff
|
tree
2016-07-04
Mark Abraham
Fi
x
es for Pow
e
r7 big-
e
n
d
ian
commit
|
commitdiff
|
tree
2016-07-01
Mark Abraham
Fix use
of _POS
I
X_THREAD*
commit
|
commitdiff
|
tree
2016-06-30
Mar
k
Abraham
Me
r
ge branch release
-
5-1 into release-2016
commit
|
commitdiff
|
tree
2016-06-29
Mark Abra
h
am
Refac
t
o
r s
y
sconf
c
he
c
king
commit
|
commitdiff
|
tree
2016-06-29
Mark
A
braham
Wo
r
k around glibc 2
.
23 wi
t
h CUDA
commit
|
commitdiff
|
tree
2016-06-28
Mark Abrah
a
m
Update to incl
u
de a gc
c
6
.
1
co
n
figurati
o
n
commit
|
commitdiff
|
tree
2016-06-28
Mark
A
b
r
aham
Fix SIMD configura
t
ion ma
n
agement
commit
|
commitdiff
|
tree
2016-06-27
M
ark A
b
raham
Remo
v
ed
unnecessary inter-simul
a
tion signalling
commit
|
commitdiff
|
tree
2016-06-27
M
ar
k
Abra
h
am
Merge br
a
nch release
-
5-1 i
n
to release-201
6
commit
|
commitdiff
|
tree
2016-06-23
Mark Abraham
All
o
w u
s
e of external lmfit pac
k
ag
e
commit
|
commitdiff
|
tree
2016-06-23
Mark Abraham
Prevent
use of m
d
run -maxh -multi
commit
|
commitdiff
|
tree
2016-06-22
Mar
k
A
bra
h
am
Fix configuration-time cpu
i
nfo code
commit
|
commitdiff
|
tree
2016-06-22
M
a
rk
A
braha
m
Merge b
r
anch relea
s
e
-5-1 in
t
o release-2016
commit
|
commitdiff
|
tree
2016-06-22
Mark Abraham
Adjust and documen
t
C++11 compiler tests
commit
|
commitdiff
|
tree
2016-06-20
Mark A
b
raha
m
Updat
e
pre-submit matrix contents
commit
|
commitdiff
|
tree
2016-06-19
Mark Abraham
Improve docs
f
o
r
linking stdlibc++ needed by ic
c
commit
|
commitdiff
|
tree
2016-06-17
Mark
Abraham
M
erge branch r
e
l
e
ase-5-1 into releas
e
-2016
commit
|
commitdiff
|
tree
2016-06-17
Mark Abraham
Fix
m
ulti-si
m
+ DD +
s
imple distance restr
a
ints
commit
|
commitdiff
|
tree
2016-06-10
Mark
A
b
r
aham
Find python for docs build
quiet
l
y
commit
|
commitdiff
|
tree
2016-06-08
Mar
k
Abraham
Me
r
ge branch release-5-1
i
nto release-2016
commit
|
commitdiff
|
tree
2016-06-07
Mark
A
b
r
aha
m
Re-add
s
upport for lin
k
ing
a
gai
n
st external Tin
y
XML-2
commit
|
commitdiff
|
tree
2016-06-07
Mark Abraham
Updat
e
s
to documentation
commit
|
commitdiff
|
tree
2016-06-02
Mark
A
braham
Fix
c
o
m
p
atibil
i
ty with old
e
r CMak
e
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraha
m
Mak
e
more CM
a
k
e vari
a
b
l
es advanced
commit
|
commitdiff
|
tree
2016-06-02
Mark Abraham
Igno
r
e
std
e
rr when dete
c
ting SIMD and build i
n
fo
commit
|
commitdiff
|
tree
2016-05-31
Mark
Abraham
Fix reference to vmdio
.
c to be v
m
dio
.
cpp
commit
|
commitdiff
|
tree
2016-05-31
M
a
r
k Abraham
Second 2
0
16
bet
a
rele
a
se
commit
|
commitdiff
|
tree
2016-05-29
Mar
k
Abraham
Simp
l
ified and updated
O
penCL compilation
commit
|
commitdiff
|
tree
2016-05-27
Mark Abraham
F
i
x
r
e
a
di
n
g
o
f bonded tables
commit
|
commitdiff
|
tree
2016-05-26
Ma
r
k Abraham
New qu
o
te
commit
|
commitdiff
|
tree
2016-05-12
Mark Abraha
m
Merge branc
h
re
l
ease-5-1 into re
l
ease-2016
commit
|
commitdiff
|
tree
2016-05-12
Mark Abraham
G
RO
M
AC
S
2016 b
e
ta1 rele
a
s
e
commit
|
commitdiff
|
tree
2016-05-10
Mark A
b
raham
B
ump clang
sta
t
ic analy
z
e
r
to version 3
.
8
commit
|
commitdiff
|
tree
2016-05-10
Mark Abraham
M
inor upda
t
e
t
o sphi
n
x dep
e
ndency
commit
|
commitdiff
|
tree
2016-05-10
M
a
rk Abraham
Fac
i
litate linking w
i
th libcx
x
commit
|
commitdiff
|
tree
2016-05-08
Mark Abraham
Fixes
for clang
3
.
7 on PowerPC
commit
|
commitdiff
|
tree
2016-05-08
Mark A
b
r
aham
Fix
co
n
stants, unit
s
and conversio
n
factors
commit
|
commitdiff
|
tree
2016-04-27
M
a
r
k Abrah
a
m
Me
r
ge
branch relea
s
e-5-1
commit
|
commitdiff
|
tree
2016-04-19
Mark
A
braham
Re
p
lace
libxml2 with tinyxml2 for
u
se in te
s
t code
commit
|
commitdiff
|
tree
2016-04-19
Mark A
b
raha
m
Fix parse_digit
s
_
f
r
om_string
commit
|
commitdiff
|
tree
2016-04-19
M
a
rk Abr
a
ham
Fix mdp label
g
e
n
e
r
ation
commit
|
commitdiff
|
tree
2016-04-18
M
a
rk Abraham
Reduce c
o
mpilatio
n
coup
l
ing of SIMD module
commit
|
commitdiff
|
tree
2016-04-14
M
ark Abra
h
am
Merge branch re
l
e
ase-5-1
commit
|
commitdiff
|
tree
2016-04-01
Mark Abraham
Revert t
o
trea
t
ing -1 as "gen
e
r
a
te a seed" in
.
mdp
commit
|
commitdiff
|
tree
2016-03-31
Mark Abra
h
am
Add tes
t
and
impro
v
ed docs for custom ch
e
ckS
e
quence
commit
|
commitdiff
|
tree
2016-03-30
Mark
Abraham
C
l
e
a
n
up vsite
c
o
de
commit
|
commitdiff
|
tree
2016-03-19
Mar
k
Abra
h
am
Add m
o
re
const
correctness
commit
|
commitdiff
|
tree
2016-03-19
Mark Abraham
Fix warnin
g
from GC
C
6
commit
|
commitdiff
|
tree
2016-03-19
M
a
r
k
Abrah
a
m
Improved so
m
e mdrun integration tests
commit
|
commitdiff
|
tree
2016-03-18
Mark Abraham
Warn abou
t
OpenMPI 1
.
8
.
6
commit
|
commitdiff
|
tree
2016-03-18
Mark Abraham
Fix typo in Fourier
dihedral equation
commit
|
commitdiff
|
tree
2016-03-15
Mark Abraha
m
Merge branch release-
5
-0 into
r
elease-
5
-1
commit
|
commitdiff
|
tree
2016-03-12
Mark Abraham
Update use of isna
n
in linear
a
l
g
ebra
commit
|
commitdiff
|
tree
2016-03-12
Mar
k
Abraham
Fi
n
d hwloc q
u
iet
l
y i
f
it's alr
e
ady been
fo
u
nd
commit
|
commitdiff
|
tree
2016-03-11
Mark Abraha
m
Ad
d
infrast
r
uc
t
ure for tests
to
c
o
mpare mdruns
commit
|
commitdiff
|
tree
2016-03-11
Mark Abraham
Merge b
r
anch
release-5-0 into release-5-1
commit
|
commitdiff
|
tree
2016-03-10
Mark Ab
r
aham
Require 2015 versio
n
for MSVC
commit
|
commitdiff
|
tree
2016-03-05
M
ark A
b
r
a
ham
Add SETTL
E
un
i
t
tests
commit
|
commitdiff
|
tree
2016-02-26
M
a
rk Ab
r
a
h
am
Separated test of CDAT
A
end tag handli
n
g from other
s
commit
|
commitdiff
|
tree
2016-02-23
Mar
k
Abraham
R
eplace cppcheck s
u
ppressio
n
in checkpoint code
commit
|
commitdiff
|
tree
2016-02-22
Mark A
b
raham
Move i
n
it of speciali
z
ed dynam
i
cal
algorithms to do_md
commit
|
commitdiff
|
tree
2016-02-21
Mark Abraham
S
e
parate table
c
onst
r
uction
commit
|
commitdiff
|
tree
2016-02-19
Mark Abra
h
am
M
e
rge branch release-5-1
commit
|
commitdiff
|
tree
2016-02-19
M
a
r
k Abr
a
h
am
M
a
ke both ft
p
a
nd http l
i
nk
s
for
s
ourc
e
download
commit
|
commitdiff
|
tree
2016-02-18
Mar
k
Ab
r
aham
Updated
reference manua
l
t
e
x
t
about PME
t
u
nin
g
commit
|
commitdiff
|
tree
2016-02-16
Mark Abraham
Merge
b
ranch release
-
5-0 into re
l
ease-5-1
commit
|
commitdiff
|
tree
2016-02-14
Mark Abraha
m
Re-generated e
p
s
for figure 4
.
8
commit
|
commitdiff
|
tree
2016-02-10
Mar
k
Abra
h
a
m
Re
-
rem
o
ve *_stochd_state function dec
l
ara
t
i
ons
commit
|
commitdiff
|
tree
2016-02-10
Mark Abraham
Improved update_
c
oord
s
h
a
ndlin
g
o
f
x
p
rime
commit
|
commitdiff
|
tree
2016-02-10
Mark Abrah
a
m
Fix issue
s
t
o
update cppcheck
s
upport to 1
.
72
commit
|
commitdiff
|
tree
2016-02-08
Ma
r
k Abraham
Merge bran
c
h release-5-0 in
t
o relea
s
e-5
-
1
commit
|
commitdiff
|
tree
2016-02-06
Mark Abrah
a
m
Me
r
ge branch
re
l
e
ase-5-1
commit
|
commitdiff
|
tree
2016-02-03
Mark
Abraham
B
u
m
pe
d
patch
number to pre
p
are for future 5
.
1
.
3 release
commit
|
commitdiff
|
tree
2016-02-03
M
ark Abr
a
ham
Version 5
.
1
.
2
commit
|
commitdiff
|
tree
2016-02-03
M
ark Abraham
F
i
x grompp
not
w
arning when
.
mdp value
s
have wrong
.
.
.
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
Me
r
ge releas
e
-5-0 into rel
e
ase-5-
1
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
Fix dEkin/dl han
d
ling with multip
l
e
ranks
commit
|
commitdiff
|
tree
2016-01-28
Mark Abraham
Merge
br
a
nch
r
elease-5-1
commit
|
commitdiff
|
tree
2016-01-28
Mark Abraham
Fix use of __APPLE
_
_ in OpenCL code
commit
|
commitdiff
|
tree
2016-01-28
Mar
k
Abraham
A
d
d OpenCL s
o
urce f
i
le types to copyrig
h
t
checker
commit
|
commitdiff
|
tree
2016-01-28
Mar
k
Abrah
a
m
Av
o
id F
P
excepti
o
n
commit
|
commitdiff
|
tree
2016-01-27
Ma
r
k Abraham
M
erge bra
n
ch release-5-1
commit
|
commitdiff
|
tree
2016-01-27
Ma
r
k Abr
a
ham
Remove
bNot
L
astFrame
commit
|
commitdiff
|
tree
2016-01-27
Mark Abraham
Add sugge
s
tions for updating
b
i
n
ut
i
ls
commit
|
commitdiff
|
tree
2016-01-26
Mark
A
braham
Fix default
f
o
r G
M
X
_
U
SE
_
N
VML
commit
|
commitdiff
|
tree
2016-01-25
Mark
A
b
r
aham
Merge
b
ra
n
c
h
release-5-
1
commit
|
commitdiff
|
tree
2016-01-24
Mark Abraham
Fix duplicate
L
aTeX
equ
a
t
io
n
lab
e
l
commit
|
commitdiff
|
tree
2016-01-24
Mark Abraha
m
Update re
f
erences to
H
TML an
d
on
l
ine documentation
commit
|
commitdiff
|
tree
2016-01-14
Mark Abraham
Permit cu
s
tomiz
e
d testing of gr
o
mpp and md
r
un
commit
|
commitdiff
|
tree
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