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Always update mdatoms when doing energy minimisation
2016-10-06
C
arlo Camilloni
Al
w
ays u
p
date mda
t
o
ms when doing energy minimisation
commit
|
commitdiff
|
tree
2016-09-08
Mark Abr
a
ham
B
u
mped pat
c
h numbe
r
to pr
e
pare for future 5
.
1
.
5
release
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
V
e
rsion 5
.
1
.
4
commit
|
commitdiff
|
tree
2016-09-07
Mark Abraham
Rem
o
ved
HIS1 from oplsaa and ch
a
rmm defin
i
tions
commit
|
commitdiff
|
tree
2016-09-06
M
a
rk Abraha
m
Work around
gl
i
bc 2
.
23 w
i
th CUDA
commit
|
commitdiff
|
tree
2016-09-02
Berk Hess
Fi
x
Par
r
inello
-
Rahman with
n
stpcoup
l
e
>
1
commit
|
commitdiff
|
tree
2016-07-29
D
avid van der
S
p
o
e
l
Fixes i
n
correct c
h
arge
s
i
n
OPLS/AA-L fo
r
HISD an
d
HISE
commit
|
commitdiff
|
tree
2016-07-21
Mark Abraham
Bumped patch number to pr
e
pare for future 5
.
1
.
4 release
commit
|
commitdiff
|
tree
2016-07-13
Mark Abraham
Version 5
.
1
.
3
commit
|
commitdiff
|
tree
2016-07-11
Michael
Shirts
Fix for i
n
correc
t
ly setting expanded ensembl
e
wh
e
n
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
D
av
i
d van der
S
poel
Introd
u
ce fatal error for too f
e
w frames in gmx d
o
s
.
commit
|
commitdiff
|
tree
2016-06-28
Berk Hess
Properly rese
t
CUDA
a
pp
l
icati
o
n
c
lo
c
ks
commit
|
commitdiff
|
tree
2016-06-27
Berk Hess
U
s
e syscon
f
(
_
SC_NPROCESSORS_O
N
LN)
commit
|
commitdiff
|
tree
2016-06-23
Ma
r
k Abraham
Prevent use o
f
mdrun -max
h
-multi
commit
|
commitdiff
|
tree
2016-06-17
Mark
A
braham
Fix multi-sim
+
DD +
s
imple distance re
s
traints
commit
|
commitdiff
|
tree
2016-06-02
Mark
A
b
r
aham
Make more CMa
k
e
v
ari
a
bles
advan
c
ed
commit
|
commitdiff
|
tree
2016-06-02
Mar
k
Ab
r
aham
Ignore
s
tderr when de
t
ecting SIM
D
and build info
commit
|
commitdiff
|
tree
2016-05-27
Mark
Abraha
m
Fix reading of bonded tables
commit
|
commitdiff
|
tree
2016-05-10
Mark Abraham
M
inor update to
s
p
hinx dependency
commit
|
commitdiff
|
tree
2016-04-19
Mark A
b
rah
a
m
Fix
m
dp
label
g
e
neration
commit
|
commitdiff
|
tree
2016-04-14
Carste
n
K
u
tzner
Corr
e
c
ted value o
f
ele
c
t
r
i
c
conversion fact
o
r f i
n
.
.
.
commit
|
commitdiff
|
tree
2016-04-04
Erik Lindahl
Fix
c
om
p
i
l
e
error
f
or IBM V
M
X on ppc64
commit
|
commitdiff
|
tree
2016-04-04
E
r
ik
L
i
ndahl
Fix SIMD d
e
t
e
ction
on
n
ew AM
D
AVX CPUs w/o fma
commit
|
commitdiff
|
tree
2016-03-31
James W
.
Barnett
Revert
b
ehavior for
h
andling SET
T
LE errors
commit
|
commitdiff
|
tree
2016-03-30
Berk
Hess
Correct
m
drun tMPI (non-)parallel er
r
or me
s
sage
commit
|
commitdiff
|
tree
2016-03-18
M
a
r
k Abra
h
a
m
Wa
r
n about O
p
enMPI 1
.
8
.
6
commit
|
commitdiff
|
tree
2016-03-18
B
erk Hess
Fix non-
n
o
rmalization of FFT autocor
r
commit
|
commitdiff
|
tree
2016-03-18
Mark
A
braham
F
ix typo in
Fourier dihedral equ
a
t
i
on
commit
|
commitdiff
|
tree
2016-03-15
Mark A
b
raham
M
erge branc
h
release
-
5
-
0 into releas
e
-5-1
commit
|
commitdiff
|
tree
2016-03-11
Ma
r
k Abraham
Merge branch re
l
ease-5-0 into
relea
s
e
-5-1
commit
|
commitdiff
|
tree
2016-02-16
Mar
k
Abraha
m
Merge br
a
nch relea
s
e-5-0 into rele
a
se
-
5-1
commit
|
commitdiff
|
tree
2016-02-14
Mark Abraham
Re-generated
e
p
s for figure 4
.
8
commit
|
commitdiff
|
tree
2016-02-08
M
ark Abraha
m
Me
r
g
e
branc
h
releas
e
-5-0 into
r
ele
a
se
-
5-1
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
B
umped patc
h
nu
m
ber to p
r
e
p
a
r
e for f
u
ture 5
.
1
.
3 release
commit
|
commitdiff
|
tree
2016-02-03
Mark A
b
raham
Ver
s
ion 5
.
1
.
2
commit
|
commitdiff
|
tree
2016-02-03
Mark Abraham
M
erge rele
a
se-
5
-0
into relea
s
e-5-1
commit
|
commitdiff
|
tree
2016-01-26
Mark Abraham
Fi
x
default for GMX_USE_NV
M
L
commit
|
commitdiff
|
tree
2016-01-12
Mark Abr
a
ham
Merg
e
branch r
e
lease-
5
-0 into relea
s
e-5-1
commit
|
commitdiff
|
tree
2016-01-07
Mark Abraham
Avo
i
d mor
e
C++
bindings for MPI
commit
|
commitdiff
|
tree
2016-01-07
Mark Abraham
Stop using UNDEFIN
E
D as
name
o
f a symbol
commit
|
commitdiff
|
tree
2016-01-07
Mar
k
Abraham
Backport md-vv fi
x
es
commit
|
commitdiff
|
tree
2015-12-29
Ber
k
Hess
Correct vector check of gmx check
commit
|
commitdiff
|
tree
2015-12-27
Mark Abraham
Fix some OpenCL issues
commit
|
commitdiff
|
tree
2015-12-08
Mark Abraham
M
erge branch 're
l
ease-5-
0
' into r
e
l
e
ase-5-1
commit
|
commitdiff
|
tree
2015-12-08
Mar
k
Abraham
Fix Trotter integrat
i
on
commit
|
commitdiff
|
tree
2015-11-25
Elton Carvalho
Rotate
F
igure 8
.
2 in manua
l
.
commit
|
commitdiff
|
tree
2015-11-24
M
ark Abraham
F
i
x e
r
ror in
mult
i
-sim communi
c
ation
commit
|
commitdiff
|
tree
2015-11-11
M
ark Abraham
Merge rel
e
ase
-
5-
0
i
n
t
o release-
5
-1
commit
|
commitdiff
|
tree
2015-11-10
Mark Abraha
m
Bump patch version to pre
p
ar
e
for 5
.
1
.
2
commit
|
commitdiff
|
tree
2015-11-04
M
ark Abraham
Ver
s
ion 5
.
1
.
1
commit
|
commitdiff
|
tree
2015-10-28
Mark Abraha
m
Suppress warnings when we have OpenCL 2
.
0
support
commit
|
commitdiff
|
tree
2015-10-15
S
zilárd
Páll
Add CUDA nvcc >=7
.
0
s
u
p
port
commit
|
commitdiff
|
tree
2015-10-14
Mark Abraham
Merge rele
a
s
e
-
5
-0 into
release-5-1
commit
|
commitdiff
|
tree
2015-10-14
Mark Abrah
a
m
Versio
n
bumps after
r
elease
commit
|
commitdiff
|
tree
2015-10-14
Ma
r
k Abra
h
am
Version 5
.
0
.
7
commit
|
commitdiff
|
tree
2015-10-13
Mark Abraham
Mer
g
e bra
n
ch release-4-6 into rele
a
se-5-0
commit
|
commitdiff
|
tree
2015-10-07
Mark
Abraham
F
i
x
ed FFTW detection s
t
atus me
s
sage location
commit
|
commitdiff
|
tree
2015-10-05
M
a
rk Abrah
a
m
Merge
rel
e
ase-5-0 into
release
-
5-1
commit
|
commitdiff
|
tree
2015-09-26
Mark Abra
h
am
Fix reaction-f
i
e
l
d warning m
e
s
sa
g
e
commit
|
commitdiff
|
tree
2015-09-16
Sz
i
lard Pal
l
Fix OpenCL build
commit
|
commitdiff
|
tree
2015-08-19
Mark A
b
raham
H
a
rden F
i
ndSphinx
.
c
m
ake
commit
|
commitdiff
|
tree
2015-08-14
Mark
A
brah
a
m
Bump patch version
to pre
p
are
f
or 5
.
1
.
1
commit
|
commitdiff
|
tree
2015-08-14
M
a
rk Abrah
a
m
Versio
n
5
.
1
commit
|
commitdiff
|
tree
2015-08-14
B
e
rk H
e
s
s
M
ake mdrun
-nt wor
k
again
commit
|
commitdiff
|
tree
2015-08-13
M
a
rk Abraham
Make it ea
s
ier to find s
e
lection help
commit
|
commitdiff
|
tree
2015-08-12
Mark Abraham
Add doc
u
mentation for energygrps with GP
U
s
commit
|
commitdiff
|
tree
2015-08-11
M
a
r
k Abraham
Abort i
f
PME tun
i
ng is active and count
e
rs res
e
t
commit
|
commitdiff
|
tree
2015-08-08
Mark
A
braham
Me
r
ge bran
c
h release
-
5-0 into release-5-1
commit
|
commitdiff
|
tree
2015-08-08
Mark Abraham
Fix docs of ftype
s
o
f
d
i
h
edrals
commit
|
commitdiff
|
tree
2015-08-04
Ma
r
k
Abrah
a
m
Merg
e
rele
a
se
-
5-0 into relea
s
e-5-1
commit
|
commitdiff
|
tree
2015-08-03
Mark Abra
h
am
F
i
x possible linking of libxml2 to zlib
commit
|
commitdiff
|
tree
2015-07-26
Mark Abrah
a
m
M
erge b
r
anch release-5-
0
into r
e
l
e
ase
-
5-
1
commit
|
commitdiff
|
tree
2015-07-26
Mark Abraham
V
ersion bumps after new release
commit
|
commitdiff
|
tree
2015-07-24
Mark
A
b
r
a
ham
Ver
s
io
n
5
.
0
.
6
commit
|
commitdiff
|
tree
2015-07-06
Mark
A
braham
First 5
.
1 release candidate
commit
|
commitdiff
|
tree
2015-07-06
Berk Hess
Fix
too small GPU pair cou
n
t estimates
commit
|
commitdiff
|
tree
2015-07-06
Berk Hess
Fix bu
g
in GPU list balancing
commit
|
commitdiff
|
tree
2015-06-29
M
a
rk
Abraham
Mer
g
e branch r
e
l
ea
s
e-5-0
commit
|
commitdiff
|
tree
2015-06-29
Mark Abra
h
am
Documented build typ
e
s in develop
e
r guide
commit
|
commitdiff
|
tree
2015-06-29
Mark
A
braham
Merge
relea
s
e-4-6 into r
e
lease-5-0
commit
|
commitdiff
|
tree
2015-06-29
Mark Abraham
Fix
a
l
l
use of nbnxn_simd
.
h
commit
|
commitdiff
|
tree
2015-06-27
Berk Hess
Improve pair search thread load
balance
commit
|
commitdiff
|
tree
2015-06-27
Mark
Abrah
a
m
Merge release-5-0
into maste
r
commit
|
commitdiff
|
tree
2015-06-26
Mark Abraham
Me
r
ge releas
e
-4-6 into rel
e
ase-5-0
commit
|
commitdiff
|
tree
2015-06-25
E
rik Lind
a
hl
Fix edr appen
d
in
g
and exact c
o
nt
i
nua
t
ion
commit
|
commitdiff
|
tree
2015-06-25
E
r
ik Li
n
d
a
hl
Fix bina
r
y
exact c
o
ntin
u
ation f
o
r
t
r
ajectories
commit
|
commitdiff
|
tree
2015-06-25
Mark Abraham
Merge r
e
lease-5-0 in
t
o master
commit
|
commitdiff
|
tree
2015-06-24
Mark Abra
h
am
Merge release-4-6 in
t
o r
e
l
e
ase-5-
0
commit
|
commitdiff
|
tree
2015-06-15
R
oss
e
n Apostol
o
v
Buildi
n
g own fftw now uses version 3
.
3
.
4
commit
|
commitdiff
|
tree
2015-06-12
M
a
rk Abraham
Fix
com
m
andline test
data
commit
|
commitdiff
|
tree
2015-06-09
Mark Abra
h
am
Merge bra
n
ch r
e
l
ease-
4
-6 into relea
s
e-
5
-0
commit
|
commitdiff
|
tree
2015-06-09
Teemu
Murtola
R
e
solve one TODO for command line he
l
p tests
commit
|
commitdiff
|
tree
2015-05-28
Teemu Murt
o
la
Improve lists in user guide for s
e
lections
commit
|
commitdiff
|
tree
2015-05-26
Mark
Abraham
Convert ewald mo
d
ule to C++
commit
|
commitdiff
|
tree
2015-05-26
Ma
r
k
A
b
r
aham
Fix use of hard-cod
e
d tem
p
orary file
n
a
m
e
commit
|
commitdiff
|
tree
2015-05-19
Ma
r
k Abraha
m
Add ch
e
cks for
correct use of
SIMD
h
eaders
.
commit
|
commitdiff
|
tree
2015-05-17
Mar
k
Abra
h
a
m
Merge branch o
r
i
gin/release-5-0
commit
|
commitdiff
|
tree
2015-05-15
Szilard P
a
ll
Assert the
s
ize of non-bonded GPU work units
commit
|
commitdiff
|
tree
2015-05-13
M
ark
A
b
rah
a
m
Ve
r
sion bumps after
n
ew
r
el
e
a
s
e
commit
|
commitdiff
|
tree
2015-05-13
Mark A
b
raham
V
ersion 5
.
0
.
5
commit
|
commitdiff
|
tree
next