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2016-07-07	Mark Abraham	Move consistency check for number of threads	commit \| commitdiff \| tree
2016-07-07	Mark Abraham	Fix build if libcuda is found but nvcc is not	commit \| commitdiff \| tree
2016-07-04	Mark Abraham	Fixes for Power7 big-endian	commit \| commitdiff \| tree
2016-07-01	Mark Abraham	Fix use of _POSIX_THREAD*	commit \| commitdiff \| tree
2016-06-30	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-29	Mark Abraham	Refactor sysconf checking	commit \| commitdiff \| tree
2016-06-29	Mark Abraham	Work around glibc 2.23 with CUDA	commit \| commitdiff \| tree
2016-06-28	Mark Abraham	Update to include a gcc 6.1 configuration	commit \| commitdiff \| tree
2016-06-28	Mark Abraham	Fix SIMD configuration management	commit \| commitdiff \| tree
2016-06-27	Mark Abraham	Removed unnecessary inter-simulation signalling	commit \| commitdiff \| tree
2016-06-27	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-23	Mark Abraham	Allow use of external lmfit package	commit \| commitdiff \| tree
2016-06-23	Mark Abraham	Prevent use of mdrun -maxh -multi	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Fix configuration-time cpuinfo code	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Adjust and document C++11 compiler tests	commit \| commitdiff \| tree
2016-06-20	Mark Abraham	Update pre-submit matrix contents	commit \| commitdiff \| tree
2016-06-19	Mark Abraham	Improve docs for linking stdlibc++ needed by icc	commit \| commitdiff \| tree
2016-06-17	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-17	Mark Abraham	Fix multi-sim + DD + simple distance restraints	commit \| commitdiff \| tree
2016-06-10	Mark Abraham	Find python for docs build quietly	commit \| commitdiff \| tree
2016-06-08	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-07	Mark Abraham	Re-add support for linking against external TinyXML-2	commit \| commitdiff \| tree
2016-06-07	Mark Abraham	Updates to documentation	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Fix compatibility with older CMake	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Make more CMake variables advanced	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Ignore stderr when detecting SIMD and build info	commit \| commitdiff \| tree
2016-05-31	Mark Abraham	Fix reference to vmdio.c to be vmdio.cpp	commit \| commitdiff \| tree
2016-05-31	Mark Abraham	Second 2016 beta release	commit \| commitdiff \| tree
2016-05-29	Mark Abraham	Simplified and updated OpenCL compilation	commit \| commitdiff \| tree
2016-05-27	Mark Abraham	Fix reading of bonded tables	commit \| commitdiff \| tree
2016-05-26	Mark Abraham	New quote	commit \| commitdiff \| tree
2016-05-12	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-05-12	Mark Abraham	GROMACS 2016 beta1 release	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Bump clang static analyzer to version 3.8	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Minor update to sphinx dependency	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Facilitate linking with libcxx	commit \| commitdiff \| tree
2016-05-08	Mark Abraham	Fixes for clang 3.7 on PowerPC	commit \| commitdiff \| tree
2016-05-08	Mark Abraham	Fix constants, units and conversion factors	commit \| commitdiff \| tree
2016-04-27	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Replace libxml2 with tinyxml2 for use in test code	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Fix parse_digits_from_string	commit \| commitdiff \| tree
2016-04-19	Mark Abraham	Fix mdp label generation	commit \| commitdiff \| tree
2016-04-18	Mark Abraham	Reduce compilation coupling of SIMD module	commit \| commitdiff \| tree
2016-04-14	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-04-01	Mark Abraham	Revert to treating -1 as "generate a seed" in .mdp	commit \| commitdiff \| tree
2016-03-31	Mark Abraham	Add test and improved docs for custom checkSequence	commit \| commitdiff \| tree
2016-03-30	Mark Abraham	Clean up vsite code	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Add more const correctness	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Fix warning from GCC 6	commit \| commitdiff \| tree
2016-03-19	Mark Abraham	Improved some mdrun integration tests	commit \| commitdiff \| tree
2016-03-18	Mark Abraham	Warn about OpenMPI 1.8.6	commit \| commitdiff \| tree
2016-03-18	Mark Abraham	Fix typo in Fourier dihedral equation	commit \| commitdiff \| tree
2016-03-15	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-03-12	Mark Abraham	Update use of isnan in linearalgebra	commit \| commitdiff \| tree
2016-03-12	Mark Abraham	Find hwloc quietly if it's already been found	commit \| commitdiff \| tree
2016-03-11	Mark Abraham	Add infrastructure for tests to compare mdruns	commit \| commitdiff \| tree
2016-03-11	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-03-10	Mark Abraham	Require 2015 version for MSVC	commit \| commitdiff \| tree
2016-03-05	Mark Abraham	Add SETTLE unit tests	commit \| commitdiff \| tree
2016-02-26	Mark Abraham	Separated test of CDATA end tag handling from others	commit \| commitdiff \| tree
2016-02-23	Mark Abraham	Replace cppcheck suppression in checkpoint code	commit \| commitdiff \| tree
2016-02-22	Mark Abraham	Move init of specialized dynamical algorithms to do_md	commit \| commitdiff \| tree
2016-02-21	Mark Abraham	Separate table construction	commit \| commitdiff \| tree
2016-02-19	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-02-19	Mark Abraham	Make both ftp and http links for source download	commit \| commitdiff \| tree
2016-02-18	Mark Abraham	Updated reference manual text about PME tuning	commit \| commitdiff \| tree
2016-02-16	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-14	Mark Abraham	Re-generated eps for figure 4.8	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Re-remove *_stochd_state function declarations	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Improved update_coords handling of xprime	commit \| commitdiff \| tree
2016-02-10	Mark Abraham	Fix issues to update cppcheck support to 1.72	commit \| commitdiff \| tree
2016-02-08	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-06	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Bumped patch number to prepare for future 5.1.3 release	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Version 5.1.2	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix grompp not warning when .mdp values have wrong...	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Merge release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-02-03	Mark Abraham	Fix dEkin/dl handling with multiple ranks	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Fix use of __APPLE__ in OpenCL code	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Add OpenCL source file types to copyright checker	commit \| commitdiff \| tree
2016-01-28	Mark Abraham	Avoid FP exception	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Remove bNotLastFrame	commit \| commitdiff \| tree
2016-01-27	Mark Abraham	Add suggestions for updating binutils	commit \| commitdiff \| tree
2016-01-26	Mark Abraham	Fix default for GMX_USE_NVML	commit \| commitdiff \| tree
2016-01-25	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Fix duplicate LaTeX equation label	commit \| commitdiff \| tree
2016-01-24	Mark Abraham	Update references to HTML and online documentation	commit \| commitdiff \| tree
2016-01-14	Mark Abraham	Permit customized testing of grompp and mdrun	commit \| commitdiff \| tree
2016-01-13	Mark Abraham	Allowed NVML support to be toggled	commit \| commitdiff \| tree
2016-01-12	Mark Abraham	Merge branch release-5-0 into release-5-1	commit \| commitdiff \| tree
2016-01-11	Mark Abraham	Improved update_coords	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Improve tpr header version handling	commit \| commitdiff \| tree
2016-01-08	Mark Abraham	Merge branch release-5-1	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Fix some mdrun header dependencies	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Avoid more C++ bindings for MPI	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Document how potential-switch works	commit \| commitdiff \| tree
2016-01-07	Mark Abraham	Stop using UNDEFINED as name of a symbol	commit \| commitdiff \| tree
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