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Fix pre-submit build matrix and description
2019-07-11
Mark
A
braham
F
i
x pre-submit bui
l
d m
a
trix and description
commit
|
commitdiff
|
tree
2019-07-11
Ke
v
in Boy
d
Use cons
t
views i
n
m
a
trix d
e
ter
m
inant calcul
a
tion
commit
|
commitdiff
|
tree
2019-07-11
Kevin Bo
y
d
Add trace functionality
to 3
x
3 mat
r
ices
commit
|
commitdiff
|
tree
2019-07-11
P
asca
l
Mer
z
Get rid of clang-tidy war
n
ing i
n
do_md/rer
u
n/mimic
commit
|
commitdiff
|
tree
2019-07-11
Pascal
Merz
Remove dependence of compute_globals on t_
s
t
ate
commit
|
commitdiff
|
tree
2019-07-11
P
a
scal Merz
Ma
k
e r
e
lax_shell_flexc
o
n
i
ndepend
e
nt of t_state
commit
|
commitdiff
|
tree
2019-07-11
K
e
vin Boyd
Clean up g
m
x solva
t
e
commit
|
commitdiff
|
tree
2019-07-10
K
evin Boyd
Add implicit
c
o
n
ve
r
sion
of mdspan
-
containing types
.
.
.
commit
|
commitdiff
|
tree
2019-07-10
M
.
Eric I
r
rg
a
ng
gmxapi
P
y
t
h
o
n
pack
a
ge documentation layout
.
commit
|
commitdiff
|
tree
2019-07-09
Paul Baue
r
Fix pos
t
submit
commit
|
commitdiff
|
tree
2019-07-08
M
a
rk Abraha
m
Fix hwloc
and sphinx detection
commit
|
commitdiff
|
tree
2019-07-08
Mark Ab
r
a
h
am
Test s
p
ecif
i
c hwloc v
e
rsion
s
commit
|
commitdiff
|
tree
2019-07-05
Ma
r
k
Abraham
I
m
prove tests of index bl
o
ck constr
u
ction
commit
|
commitdiff
|
tree
2019-07-04
M
a
r
k
Abraha
m
Fix
c
lang-tidy-
7
issues
commit
|
commitdiff
|
tree
2019-07-02
Kevin Boyd
Ad
d
mdspan
basic elementwise m
a
th
commit
|
commitdiff
|
tree
2019-07-02
M
.
Eric I
r
rga
n
g
Updat
e
gmx
a
pi test fixtures
.
commit
|
commitdiff
|
tree
2019-06-27
Sz
i
l
árd Páll
Remove alrea
d
y resolved post
-
submit matr
i
x TODO
commit
|
commitdiff
|
tree
2019-06-24
S
z
ilárd P
á
ll
Only
u
se A
V
X512 in
own-F
F
TW if
GROMACS also
u
s
e
s it
commit
|
commitdiff
|
tree
2019-06-24
Pascal
M
erz
M
a
k
e
global topology cons
t
ant i
n
trajectory
writing
commit
|
commitdiff
|
tree
2019-05-13
Artem Zhmurov
Clarif
y
the Ene
r
g
yOutput I
commit
|
commitdiff
|
tree
2019-05-07
Mark Ab
r
aham
Pro
v
ide better help fo
r
usi
n
g libc++
commit
|
commitdiff
|
tree
2019-05-06
Artem Zh
m
urov
F
i
x
i
ng minor memory issues in
MDL
i
b
commit
|
commitdiff
|
tree
2019-05-03
P
aul
B
auer
R
e
place
t
_
grps wi
t
h std::vector
commit
|
commitdiff
|
tree
2019-04-25
Szilárd Páll
F
ix clang wa
r
ning about
N
UL
L
use
commit
|
commitdiff
|
tree
2019-04-25
Szilárd Pá
l
l
Avo
i
d usi
n
g AtomL
o
cal
i
ty::Count as
a
v
alid
v
al
u
e
commit
|
commitdiff
|
tree
2019-04-25
Artem
Z
h
murov
Im
p
rovements f
o
r
energy o
u
t
p
ut test
.
commit
|
commitdiff
|
tree
2019-04-23
M
ar
k
Abra
h
am
Update
d
clang -Weverything checks
t
o
clang-7
commit
|
commitdiff
|
tree
2019-04-18
Pau
l
B
auer
Update clang-tidy to
c
h
eck
for danglin
g
ref
e
r
e
nces
commit
|
commitdiff
|
tree
2019-04-18
Berk
H
e
s
s
Fix pd
b
-
r
elated issu
e
s
commit
|
commitdiff
|
tree
2019-04-17
Paul
B
a
uer
Creat
e
gmx::compat::string_view
commit
|
commitdiff
|
tree
2019-04-16
ejjo
r
d
a
n
Die with helpful not
e
i
n
case of
i
nc
o
rrect input to
.
.
.
commit
|
commitdiff
|
tree
2019-04-10
M
.
E
r
ic
I
rrgang
Us
e
p
ybi
n
d11
t
o m
a
k
e
a m
i
nimal C++ Python
e
xtension
.
commit
|
commitdiff
|
tree
2019-04-03
Pau
l
Bauer
Fi
x
pos
t
submi
t
commit
|
commitdiff
|
tree
2019-03-28
Ro
l
and Schulz
F
ix U
B
v
ector
u
sage
commit
|
commitdiff
|
tree
2019-03-25
Mark
A
braham
Co
n
v
e
rt gmx d
u
mp to module
commit
|
commitdiff
|
tree
2019-03-22
Christ
i
an Bla
u
densityfitting - serializer
f
or mrc
header data
.
commit
|
commitdiff
|
tree
2019-03-19
B
erk He
s
s
Reduc
e
depe
n
dencies of nbnxn_atomdata_t
commit
|
commitdiff
|
tree
2019-03-05
Mark Abr
a
h
a
m
Make p
d
b2g
m
x
t
ests run i
n
Je
n
kins
commit
|
commitdiff
|
tree
2019-03-05
Berk Hess
Fix
p
o
st-submit wa
r
nings
commit
|
commitdiff
|
tree
2019-03-04
P
aul Bauer
M
e
rge "Merge br
a
nch release-2019"
commit
|
commitdiff
|
tree
2019-03-01
J
u
kka Maatta
Make OpenCL dummy
K
ernel to require a input
p
ara
m
eter
commit
|
commitdiff
|
tree
2019-02-26
Prashanth
K
anduri
M
o
ving finish_r
u
n
(
.
.
.
) to runner
.
c
p
p
commit
|
commitdiff
|
tree
2019-02-21
Berk Hess
M
o
ve
fre
e
-energy ker
n
el
d
ispatch into
n
b
n
x
m modul
e
commit
|
commitdiff
|
tree
2019-02-20
Paul Bauer
Merge "Merge branc
h
'r
e
l
e
ase-2019
'
i
n
to master"
commit
|
commitdiff
|
tree
2019-02-20
Ber
k
Hess
Refacto
r
DLB r
e
gion hand
l
ing
commit
|
commitdiff
|
tree
2019-02-20
Paul Bauer
M
erge b
r
a
nch
'rel
e
as
e
-2019' into
m
a
s
ter
commit
|
commitdiff
|
tree
2019-02-19
Paul Ba
u
er
Prepare f
o
r 2019
.
2
commit
|
commitdiff
|
tree
2019-02-19
Rola
n
d Sc
h
ulz
I
m
prove libstd++ handling
commit
|
commitdiff
|
tree
2019-02-15
Paul Bauer
Version
2
019
.
1
commit
|
commitdiff
|
tree
2019-02-15
Ma
r
k Abra
h
a
m
Improved diagnostics when PME canno
t
ru
n
on GPUs
commit
|
commitdiff
|
tree
2019-02-15
Berk Hess
Fix mass Delta
H doubl
e
count
i
ng
commit
|
commitdiff
|
tree
2019-02-15
Szilárd Páll
Exten
d
performance
c
onsider
a
tio
n
s on bond
e
d offload
commit
|
commitdiff
|
tree
2019-02-13
S
z
ilárd Páll
Minor refactorin
g
in mdrunnn
e
r
commit
|
commitdiff
|
tree
2019-02-12
Szilárd
P
ál
l
Minor ref
a
ctor of gp
u
id /
task mapp
i
n
g p
a
rsing
commit
|
commitdiff
|
tree
2019-02-12
Paul Bauer
Refactor sp
e
cia
l
bonds
commit
|
commitdiff
|
tree
2019-02-12
Paul
B
auer
Refacto
r
t_rbonde
d
and
t
_
r
bo
n
ded
s
commit
|
commitdiff
|
tree
2019-02-12
Christian Blau
3x3 matrices
commit
|
commitdiff
|
tree
2019-02-12
M
ark Abra
h
a
m
Remove gmx::Regex
commit
|
commitdiff
|
tree
2019-02-09
Paul
B
auer
Change nightly matrix
l
a
bel t
o
not us
e
hwl
o
c
commit
|
commitdiff
|
tree
2019-02-08
Mark Abraha
m
Reform
e
n
e
rg
y
output t
e
sts
commit
|
commitdiff
|
tree
2019-02-02
Roland
Schu
l
z
Remove
r
eliance on inco
n
sistent cmake featu
r
e testin
g
commit
|
commitdiff
|
tree
2019-01-29
Roland Sc
h
u
l
z
Add cmake C+
+
1
4
f
eature check
commit
|
commitdiff
|
tree
2019-01-26
Roland Schulz
F
ix
mi
s
c
clang warning
s
commit
|
commitdiff
|
tree
2019-01-25
Be
r
k Hess
Fix LINCS bug
f
rom re
c
e
n
t c
o
mmi
t
21
1
039fc
commit
|
commitdiff
|
tree
2019-01-25
Rol
a
nd Schulz
Work-around for IC
C
bug in
s
imd-tests
commit
|
commitdiff
|
tree
2019-01-23
Roland Schulz
Merge release-20
1
9 into master
commit
|
commitdiff
|
tree
2019-01-23
Paul
B
auer
Chan
g
e gcov to ru
n
o
n
bs-mic
commit
|
commitdiff
|
tree
2019-01-23
R
o
land Schu
l
z
Turn Syste
m
AtomIte
r
ator into pro
p
er itera
t
or
commit
|
commitdiff
|
tree
2019-01-22
P
a
ul Baue
r
Prepare for 2018
.
6
commit
|
commitdiff
|
tree
2019-01-22
P
aul Bauer
Version 2018
.
5
commit
|
commitdiff
|
tree
2019-01-21
Mark Abraham
Fi
x
trjconv -ndec
commit
|
commitdiff
|
tree
2019-01-16
Paul Bauer
Fix
mem
o
ry leak in
s
o
lvate
commit
|
commitdiff
|
tree
2019-01-15
Kevin B
o
y
d
Fix tiny leak in pleasecite
.
cpp
commit
|
commitdiff
|
tree
2019-01-14
M
ark Abra
h
am
Remov
e
ct
e
s
t se
c
tio
n
c
a
lled
k
ernel
commit
|
commitdiff
|
tree
2019-01-14
Mark Abr
a
ham
M
i
grate TPI testing to Verlet
sche
m
e
commit
|
commitdiff
|
tree
2019-01-10
Mark Abraha
m
Add more
checks for
div
i
sio
n
b
y ze
r
o
commit
|
commitdiff
|
tree
2019-01-10
Pa
u
l Bauer
Fi
x
string handling in vmdio
commit
|
commitdiff
|
tree
2019-01-09
Pa
u
l
B
a
u
e
r
Fix uncrusti
f
y comp
l
ain
i
ng about
files
commit
|
commitdiff
|
tree
2019-01-09
Kevin Boyd
Clean up thr
e
ad tear
d
o
w
n
commit
|
commitdiff
|
tree
2019-01-08
Mark Abraham
Fix trj
c
o
n
v -nd
e
c
commit
|
commitdiff
|
tree
2019-01-08
M
ark Ab
r
a
ham
Sim
p
l
i
fy reporting of G
P
U
selection
commit
|
commitdiff
|
tree
2019-01-07
Paul Ba
u
e
r
Reus
e
Sphinx environm
e
nt again
commit
|
commitdiff
|
tree
2019-01-07
Pau
l
Bauer
Remove DOI entrie
s
when not
o
n r
e
lease patch
commit
|
commitdiff
|
tree
2019-01-02
Kevin Bo
y
d
Free topology in
n
on-D
D
s
i
mulati
o
ns
commit
|
commitdiff
|
tree
2019-01-02
Ma
r
k
Abraham
Merge
branch release-2019
commit
|
commitdiff
|
tree
2019-01-02
Szil
á
rd Páll
Do not whitelist t
h
e use of
O
penCL 1
.
1 API
commit
|
commitdiff
|
tree
2018-12-31
Paul Bauer
P
rep
a
re for 2019
.
1
commit
|
commitdiff
|
tree
2018-12-31
Paul
Bauer
GROMACS
2
019 release
commit
|
commitdiff
|
tree
2018-12-31
Kevin Boyd
O
n
ly
r
e
p
o
rt i
n
tra-s
i
m co
m
mu
n
ication
w
i
th multiple
ranks
commit
|
commitdiff
|
tree
2018-12-31
Paul Bauer
Me
r
ge
b
r
a
n
ch release-2018 into release-2019
commit
|
commitdiff
|
tree
2018-12-31
D
a
vid
v
an der Spoel
M
o
v
ed
g
eneric simula
t
iondatabase cod
e
to testutils
.
commit
|
commitdiff
|
tree
2018-12-22
Szil
á
r
d
Páll
Runtim
e
check of dev
i
ce
Op
e
nCL
s
upport
commit
|
commitdiff
|
tree
2018-12-21
Szilárd Páll
Make jen
k
ins own-fft
w
v
e
rif
y
use
local tarball
commit
|
commitdiff
|
tree
2018-12-19
Jiannan
L
iu
Missing factor of
2
in cos-acceleration
commit
|
commitdiff
|
tree
2018-12-19
Pau
l
B
auer
M
e
rge "M
e
rge
r
el
e
ase
-
201
9
b
r
anch int
o
master
"
commit
|
commitdiff
|
tree
2018-12-17
K
e
v
i
n Boyd
F
ix m
e
mory lea
k
s
in
n
s
cle
a
n
up
commit
|
commitdiff
|
tree
2018-12-17
Paul Bau
e
r
Co
p
y
parallelisati
o
n info from
o
l
d webpage
commit
|
commitdiff
|
tree
2018-12-17
Paul Bauer
Merge branch
release-2018 into releas
e
-2019
commit
|
commitdiff
|
tree
2018-12-14
Berk
H
ess
F
i
x LINC
S
triangl
e
con
s
training with OpenM
P
commit
|
commitdiff
|
tree
2018-12-14
Paul Bauer
G
R
OMACS 2019 Rel
e
ase ca
n
didate
commit
|
commitdiff
|
tree
next