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fixed segv in TPI with PME, fixes #927
2012-04-27
Berk Hess
fixed segv
i
n TPI with PME, fixes #927
commit
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commitdiff
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tree
2012-04-26
Berk Hess
Merge release-4-5-patches into release-4
-
6
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commitdiff
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2012-04-26
Berk
H
ess
f
i
xed th
e
repor
t
ed
t
em
p
e
rature wit
h
B
rownian dyn
a
m
i
c
s
commit
|
commitdiff
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tree
2012-04-25
Be
r
k Hess
replaced PPPM by P3M-AD: a few lines in pme
.
c
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|
commitdiff
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tree
2012-04-25
Berk Hess
fixed i
n
iti
a
l C
O
M motion remov
a
l
with multiple grou
p
s
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|
commitdiff
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tree
2012-04-18
Berk Hess
fixed segfault in gra
p
h
code with coordinate subset
s
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|
commitdiff
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tree
2012-04-18
Berk Hess
allow -ap
p
end to overrule un
s
upported file locking
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|
commitdiff
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tree
2012-04-17
Ber
k
Hess
chan
g
ed mdrun file
l
o
cking
n
o
t
supported error to
a
.
.
.
commit
|
commitdiff
|
tree
2012-04-16
Be
r
k Hess
changed default for nstxout, ns
t
v
o
ut and nstlog
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|
commitdiff
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tree
2012-04-16
Berk Hess
c
heckp
o
int files
now contain a double precision flag
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|
commitdiff
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2012-03-27
Berk Hess
added cor
r
ect
i
o
n for PME virial
w
ith non-l
i
n
ear virtual
.
.
.
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|
commitdiff
|
tree
2012-03-23
Berk Hess
fixed g_bar xvg readin
g
issue
commit
|
commitdiff
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tree
2012-03-17
Berk Hess
fixed
i
ncre
a
si
n
g memory usage w
i
th
SHAKE and
D
D
commit
|
commitdiff
|
tree
2012-03-13
Berk Hess
mdr
u
n -npme
w
it
h
o
u
t PM
E
or with PD now g
e
ner
a
tes a
.
.
.
commit
|
commitdiff
|
tree
2012-03-05
Berk Hess
fixed g_anae
i
g in
c
o
r
r
ect mu
l
tipl
e
e
xtr
e
mes, fixes #870
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|
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2012-03-05
Ber
k
Hess
ad
d
ed
ch
e
c
k
for
m
ass
-
weightin
g
with
g_anaeig -entropy
.
.
.
commit
|
commitdiff
|
tree
2012-03-05
Be
r
k
H
ess
r
emoved i
n
itial tempera
t
ure with OpenMM, fixes #757
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|
commitdiff
|
tree
2012-02-28
Berk Hess
fixed array index out o
f
b
o
unds in EM
force
t
rr storage
commit
|
commitdiff
|
tree
2012-02-26
Berk Hess
us
e
separ
a
te PME nodes with #no
d
e
s
>
1
8
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|
commitdiff
|
tree
2012-02-23
Ber
k
Hess
added tpx file tag string
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|
commitdiff
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tree
2012-02-20
Berk Hes
s
changed defaul
t
epsilon-rf
v
alue t
o
0
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|
commitdiff
|
tree
2012-02-10
B
erk
H
ess
fix
e
d gmxcheck seg
v
wit
h
tpr files
wit
h
out AdResS
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|
commitdiff
|
tree
2012-02-06
B
e
rk Hess
Fixed bug
with COM mot
i
on
removal o
n
p
art of the system
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|
commitdiff
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tree
2012-02-02
Berk Hess
Improved the a
c
curacy of the sd1 integr
a
tor
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|
commitdiff
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tree
2011-11-27
B
erk
H
e
ss
f
ixed p
u
ll constraint
p
eri
o
dicity con
s
iste
n
cy chec
k
.
.
.
commit
|
commitdiff
|
tree
2011-11-15
Berk He
s
s
fixed dd
l
oad print frequ
e
ncy with ns
t
eps=-1, fixes
.
.
.
commit
|
commitdiff
|
tree
2011-10-13
Berk Hess
f
i
xed pull
constrai
n
in
g
doing
n
othing, fixes #
8
25
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|
commitdiff
|
tree
2011-10-06
Berk
H
ess
fixed segv in parallel replica exchange
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|
commitdiff
|
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2011-09-19
Berk He
s
s
added grompp check for posres
+
p
c
oupl+r
e
fcoord_scali
n
g=no
commit
|
commitdiff
|
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2011-09-15
Ber
k
Hess
mdrun -multi
-cpi now che
c
k
s if simu
l
ations parts ar
e
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
Berk Hes
s
fixed g
r
omp
p
issue wi
t
h decoupl
i
ng and
v
irtu
a
l
sites
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|
commitdiff
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tree
2011-09-05
Berk Hess
made allocation for LIN
C
S with particle decomp
o
sition
.
.
.
commit
|
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2011-08-29
Berk Hess
fi
x
e
d inc
o
rrect p
V
term in
the energ
y
f
ile
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|
commitdiff
|
tree
2011-08-22
Berk Hess
fixed operation on
c
lo
s
ed fi
l
e struc
t
ur
e
i
n
gm
x
_rm
s
dis
t
.
.
.
commit
|
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2011-08-22
Berk Hess
fixed pos
s
ible infi
n
ite loop whe
n
r
eading
a
tom types
.
.
.
commit
|
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2011-08-15
B
er
k
Hess
fixed incor
r
ect pointe
r
assign
m
ent in g
_
protonate
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|
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|
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2011-08-12
Berk Hess
implemen
t
ed fu
l
l
e
xclusion support
for the
c
h
arge-gro
u
p
.
.
.
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|
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|
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2011-08-10
B
e
rk Hess
remo
v
ed npmenod
e
s m
i
smatch warning
in read_checkpo
i
nt
.
.
.
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|
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2011-08-10
Berk H
e
ss
remov
e
d fata
l
_e
r
ror for prime number of nodes when
.
.
.
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|
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