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2013-09-19	Teemu Murtola	Framework for help export from wrapper binary.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Add option to build a standalone mdrun binary only.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Move mdrun into the wrapper binary.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Make parse_common_args() not exit.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Remove unused -man output formats.	commit \| commitdiff \| tree
2013-09-09	Teemu Murtola	Make gmx_ana_pos_t a C++ class.	commit \| commitdiff \| tree
2013-09-09	Teemu Murtola	Add some legends to C++ tool output.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Remove duplicate .nr members from selection structs.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Remove gmx_ana_indexmap_t::bMapStatic.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Move gmx_ana_pos_t::g into gmx_ana_indexmap_t.	commit \| commitdiff \| tree
2013-09-06	Teemu Murtola	Support for parallel data modules.	commit \| commitdiff \| tree
2013-09-05	Teemu Murtola	AbstractAnalysisData module handling into a separate...	commit \| commitdiff \| tree
2013-09-01	Teemu Murtola	Merge "Merge branch release-4-6 into master"	commit \| commitdiff \| tree
2013-08-30	Teemu Murtola	Clean-up and improvements in C++ tools.	commit \| commitdiff \| tree
2013-08-24	Teemu Murtola	Fine-tune copyright printing.	commit \| commitdiff \| tree
2013-08-24	Teemu Murtola	[RFC] Really uniform startup path for all binaries.	commit \| commitdiff \| tree
2013-08-21	Teemu Murtola	Statistics for gmx-distance.	commit \| commitdiff \| tree
2013-08-21	Teemu Murtola	Lifetime statistics into gmx-select.	commit \| commitdiff \| tree
2013-08-16	Teemu Murtola	Replacement for g_bond and g_dist.	commit \| commitdiff \| tree
2013-08-11	Teemu Murtola	Support for multiple analysis data sets in modules.	commit \| commitdiff \| tree
2013-08-11	Teemu Murtola	Base support for multiple analysisdata data sets.	commit \| commitdiff \| tree
2013-08-10	Teemu Murtola	Remove superfluous selection names from refdata.	commit \| commitdiff \| tree
2013-08-10	Teemu Murtola	Add check for unsorted index groups in selections.	commit \| commitdiff \| tree
2013-08-09	Teemu Murtola	Treat exceptions better in interactive selections.	commit \| commitdiff \| tree
2013-08-05	Teemu Murtola	Add unit tests for index groups in selections.	commit \| commitdiff \| tree
2013-08-04	Teemu Murtola	Add unit test coverage for simple selection keywords.	commit \| commitdiff \| tree
2013-08-03	Teemu Murtola	File utils to C++.	commit \| commitdiff \| tree
2013-08-02	Teemu Murtola	Add an option to disable all asserts for coverage.	commit \| commitdiff \| tree
2013-07-30	Teemu Murtola	Handle wrapper binary options also for symlinks.	commit \| commitdiff \| tree
2013-07-30	Teemu Murtola	Better command-line option handling for tests.	commit \| commitdiff \| tree
2013-07-25	Teemu Murtola	Add unit tests for selection position calculation.	commit \| commitdiff \| tree
2013-07-24	Teemu Murtola	Fix pthread detection for GMock	commit \| commitdiff \| tree
2013-07-22	Teemu Murtola	Convenience methods for implementing main().	commit \| commitdiff \| tree
2013-07-22	Teemu Murtola	Improve program name reporting.	commit \| commitdiff \| tree
2013-07-22	Teemu Murtola	Fix Doxygen warnings.	commit \| commitdiff \| tree
2013-07-21	Teemu Murtola	Uniform "generated by" information in output files.	commit \| commitdiff \| tree
2013-07-21	Teemu Murtola	More files to C++.	commit \| commitdiff \| tree
2013-07-20	Teemu Murtola	Options for controlling startup output.	commit \| commitdiff \| tree
2013-07-20	Teemu Murtola	Be less verbose with program options.	commit \| commitdiff \| tree
2013-07-19	Teemu Murtola	Pre-emptively fix some C++ warnings.	commit \| commitdiff \| tree
2013-07-19	Teemu Murtola	Uniform and less verbose startup for all binaries.	commit \| commitdiff \| tree
2013-07-19	Teemu Murtola	Extract Doxygen comments within #ifdef __cplusplus.	commit \| commitdiff \| tree
2013-07-17	Teemu Murtola	Support for storing multipoint analysis data.	commit \| commitdiff \| tree
2013-07-03	Teemu Murtola	Split AnalysisDataStorageFrame into two.	commit \| commitdiff \| tree
2013-07-03	Teemu Murtola	Switch remaining main() functions and copyrite.c to...	commit \| commitdiff \| tree
2013-07-03	Teemu Murtola	Remove g_highway and vbox.c.	commit \| commitdiff \| tree
2013-07-03	Teemu Murtola	Further copyrite.h cleanup.	commit \| commitdiff \| tree
2013-06-30	Teemu Murtola	Script for running uncrustify for modified files.	commit \| commitdiff \| tree
2013-06-28	Teemu Murtola	Fix overeager VdW radii change note.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	More flexible position input for nbsearch routines.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	C++-ify analysis nbsearch more.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Remove C API for analysis neighborhoor search.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Better concurrency support for analysis nbsearch.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Fix analysis neighborhood search for 2D/screw PBC.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Proper C++ API for analysis neighborhood search.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	Fix some issues found by cppcheck-1.58.	commit \| commitdiff \| tree
2013-06-27	Teemu Murtola	More binaries into the wrapper binary.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Clean up copyrite.*.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Move FFT routines to src/gromacs/fft/.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	Restructure AnalysisData unit tests.	commit \| commitdiff \| tree
2013-06-24	Teemu Murtola	More flexible input data for analysisdata tests.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Add unit tests for selection index mapping.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Uniform initialization for analysisdata tests.	commit \| commitdiff \| tree
2013-06-17	Teemu Murtola	Separate topology handling in selection tests.	commit \| commitdiff \| tree
2013-06-14	Teemu Murtola	Improve reference data checks against same data.	commit \| commitdiff \| tree
2013-06-13	Teemu Murtola	Added ability to use cppcheck from the command line.	commit \| commitdiff \| tree
2013-06-12	Teemu Murtola	Better averaging for analysis data modules.	commit \| commitdiff \| tree
2013-06-11	Teemu Murtola	Move wman.* to src/gromacs/onlinehelp/.	commit \| commitdiff \| tree
2013-06-04	Teemu Murtola	Split cmake thread detection into core thread and thread_mpi.	commit \| commitdiff \| tree
2013-05-30	Teemu Murtola	Only build base thread support with GMX_THREAD_MPI...	commit \| commitdiff \| tree
2013-05-28	Teemu Murtola	Fix an error in selection online help.	commit \| commitdiff \| tree
2013-05-24	Teemu Murtola	Merge branch 'release-4-6'	commit \| commitdiff \| tree
2013-05-22	Teemu Murtola	Add a few sequence diagrams to Doxygen docs.	commit \| commitdiff \| tree
2013-04-29	Teemu Murtola	Remove gmx_ana_index_t::name and unused code.	commit \| commitdiff \| tree
2013-04-19	Teemu Murtola	Merge branch 'release-4-5-patches'	commit \| commitdiff \| tree
2013-04-17	Teemu Murtola	Add check for empty selections.	commit \| commitdiff \| tree
2013-04-17	Teemu Murtola	Implement remaining SelectionOption flags.	commit \| commitdiff \| tree
2013-04-10	Teemu Murtola	Fix another bug in selection subexpression handling.	commit \| commitdiff \| tree
2013-04-10	Teemu Murtola	Fix bug in selection subexpression handling.	commit \| commitdiff \| tree
2013-04-10	Teemu Murtola	Merge "Merge release-4-5-patches into release-4-6"...	commit \| commitdiff \| tree
2013-04-10	Teemu Murtola	Fix another bug in selection subexpression handling.	commit \| commitdiff \| tree
2013-04-07	Teemu Murtola	Fix bug in selection subexpression handling.	commit \| commitdiff \| tree
2013-03-26	Teemu Murtola	Improve master-specific CMake behavior.	commit \| commitdiff \| tree
2013-03-26	Teemu Murtola	Add histogram output for 'gmx gangle'.	commit \| commitdiff \| tree
2013-03-24	Teemu Murtola	Merge libgmxana into libgromacs.	commit \| commitdiff \| tree
2013-03-22	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-03-08	Teemu Murtola	Better test assertions for exceptions.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Improve enum option interface.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	More flexible handling of enum option descriptions.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Fix copyright notices for new C++ code.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Update my e-mail address on author lines.	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Uncrustify template.cpp and selection.cpp."	commit \| commitdiff \| tree
2013-03-07	Teemu Murtola	Merge "Merge release-4-6 into master"	commit \| commitdiff \| tree
2013-02-25	Teemu Murtola	Uncrustify template.cpp and selection.cpp.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Fix velocity and force evaluation for empty selections.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Change ConstArrayRef constructor argument order.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Add continuous array accessors for selection data.	commit \| commitdiff \| tree
2013-02-13	Teemu Murtola	Add tests for selection mass evaluation and fix it.	commit \| commitdiff \| tree
2013-02-10	Teemu Murtola	Manual reformatting in preparation for uncrustify.	commit \| commitdiff \| tree
2013-01-13	Teemu Murtola	Remove unused bfunc.h.	commit \| commitdiff \| tree
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