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Framework for help export from wrapper binary.
2013-01-04
T
eem
u
M
urtola
Me
r
ge "Min
o
r
fixe
s
to g_angle help description
.
" into
.
.
.
commit
|
commitdiff
|
tree
2013-01-04
Teem
u
Murtola
Merge "add an
option
t
o not build the template" into
.
.
.
commit
|
commitdiff
|
tree
2013-01-04
Teemu Murtola
Merge
"
Add mis
s
ing def
i
nes t
o
PK
G
_CFLAGS"
into
r
elease-4-6
commit
|
commitdiff
|
tree
2013-01-04
Teemu Murtola
Merg
e
"
Fi
x
ed error m
e
ssag
e
f
or zw
i
t
terion residues
.
.
.
commit
|
commitdiff
|
tree
2012-12-30
T
e
emu
Murtola
Remov
e
non-funct
i
on
a
l
PowerPC invsqrt
.
commit
|
commitdiff
|
tree
2012-12-30
Teemu Murtola
Remove
super
f
luous memory a
l
l
ocation
.
commit
|
commitdiff
|
tree
2012-12-21
Teemu
Murtola
Mak
e
gmx_cpui
d
.
h self-st
a
nding
.
commit
|
commitdiff
|
tree
2012-12-21
Teemu Murtola
Remove non-fu
n
ctional compi
l
e
r override
f
or Ma
c
O
SX
.
commit
|
commitdiff
|
tree
2012-12-17
Te
e
mu Murtola
Fix
li
c
en
s
e
t
e
x
t
prin
t
ed by programs
.
commit
|
commitdiff
|
tree
2012-12-10
Te
e
mu Murtola
Rename g_a
n
a to gmx
.
commit
|
commitdiff
|
tree
2012-12-10
Teemu Murtola
Replace mos
t
too
l
s with sym
l
inks to g_
a
na
.
commit
|
commitdiff
|
tree
2012-12-10
Teemu Mu
r
tola
Wr
a
pper module to add o
l
d
b
inaries
into
g
_ana
.
commit
|
commitdiff
|
tree
2012-12-06
T
e
em
u
Mu
r
tola
Fix build
of template and other external
c
ode
.
commit
|
commitdiff
|
tree
2012-11-25
Teemu Murtola
E
x
tended build
i
nformati
o
n output and refere
n
ce build
.
.
.
commit
|
commitdiff
|
tree
2012-11-10
Teemu Murtola
O
ption
to create syml
i
n
ks
to g_ana
.
commit
|
commitdiff
|
tree
2012-11-10
Teemu Murtola
Always use
r
ela
t
ive
i
nstall paths
.
commit
|
commitdiff
|
tree
2012-11-10
Teemu Murt
o
l
a
Re
m
ove obsolete
G
MX_THREAD_SHM_FDECOMP
.
commit
|
commitdiff
|
tree
2012-11-08
Teemu Murtola
I
n
c
lu
d
e
G
romacs file
s
with do
u
bl
e
quotes in
C
++
code
.
commit
|
commitdiff
|
tree
2012-11-08
Te
e
mu Murtola
Rem
o
ve unnecessar
y
co
n
fig
.
h includes in C++ code
.
commit
|
commitdiff
|
tree
2012-10-27
Teemu Murtola
Clean up gi
t
versi
o
n
gene
r
ation
.
commit
|
commitdiff
|
tree
2012-10-16
Teemu Murt
o
la
S
cript for analyzing i
n
clude dependenc
i
es
.
commit
|
commitdiff
|
tree
2012-10-15
Teemu Murtola
Clean up
g
_
ana angle impl
e
men
t
ati
o
n
.
commit
|
commitdiff
|
tree
2012-10-15
Teemu Murtol
a
Ex
t
ract Doxy
g
en docs for anonymous names
p
ac
e
s
.
commit
|
commitdiff
|
tree
2012-10-15
Teemu Mu
r
t
ola
F
ix
m
ost
warnings with
D
o
xygen
1
.
8
.
1
.
1
.
commit
|
commitdiff
|
tree
2012-10-15
T
e
emu
M
urtol
a
R
e
move expl
i
cit e
n
d-of-a
r
ray markers from tests
.
commit
|
commitdiff
|
tree
2012-10-04
Teemu Murtola
U
nit tests for insolidangle selections
.
commit
|
commitdiff
|
tree
2012-10-04
Teemu Murtola
Add
o
c
cu
p
i
ed fraction and PDB output to g_an
a
se
l
ect
.
commit
|
commitdiff
|
tree
2012-10-04
Tee
m
u Murto
l
a
Update valgrind suppressions af
t
er mem leak
f
ixe
s
.
commit
|
commitdiff
|
tree
2012-10-04
T
eemu Mu
r
tola
Suppor
t
C++11 <regex> as alte
r
n
ative to
P
OSIX r
e
gex
.
h
.
commit
|
commitdiff
|
tree
2012-10-04
Teemu M
u
rtola
Encapsulate regexp us
e
in
s
e
l
e
ctions
.
commit
|
commitdiff
|
tree
2012-10-03
Teemu Murt
o
la
M
o
re sel
e
ction unit test
s
for
variables an
d
fix
e
s
.
commit
|
commitdiff
|
tree
2012-10-02
Teem
u
Mu
r
to
l
a
M
o
r
e
t
horoug
h
unit tests for plus/merge selections
.
commit
|
commitdiff
|
tree
2012-09-28
Teemu Mur
t
ola
Remove unuse
d
code
.
commit
|
commitdiff
|
tree
2012-09-27
Tee
m
u Mur
t
o
l
a
M
e
rge
"
Fix inso
l
idangle
selec
t
ions nea
r
pol
e
s
.
" into
.
.
.
commit
|
commitdiff
|
tree
2012-09-25
T
eemu M
u
rtola
Fix
a
few memo
r
y leaks in C++ code
.
commit
|
commitdiff
|
tree
2012-09-25
Tee
m
u Murtola
F
ine-tu
n
ing for FileNameOption
.
commit
|
commitdiff
|
tree
2012-09-24
T
eemu Mur
t
ola
Add pdbname selection keyword
.
commit
|
commitdiff
|
tree
2012-09-24
Teemu Mu
r
tola
A
d
d
pdbnam
e
selection keyword
.
commit
|
commitdiff
|
tree
2012-09-18
T
e
emu Mu
r
tol
a
Fixes for n
u
meric and po
s
iti
o
n selection va
r
iables
.
commit
|
commitdiff
|
tree
2012-09-18
Teemu Mur
t
o
la
Add
some
v
a
l
g
rind suppress
i
ons for
M
a
c
.
commit
|
commitdiff
|
tree
2012-09-16
Teemu M
u
rtola
Fix i
n
solidangle
se
l
e
ct
i
ons near pol
e
s
.
commit
|
commitdiff
|
tree
2012-09-13
T
ee
m
u
M
urtola
Fix some memo
r
y leaks
.
commit
|
commitdiff
|
tree
2012-09-10
Teemu Mu
r
t
ola
Mer
g
e
*
optioninf
o
.
h
to *option
.
h
.
commit
|
commitdiff
|
tree
2012-09-07
Teemu Murtola
Print mor
e
informati
o
n
on excepti
o
ns
.
commit
|
commitdiff
|
tree
2012-09-07
Teemu Mu
r
tola
Bette
r
error messages for SelectionFileOption
.
commit
|
commitdiff
|
tree
2012-09-07
Teem
u
Murtola
Better context
i
nfo
r
ma
t
ion handlin
g
f
o
r
exceptions
.
commit
|
commitdiff
|
tree
2012-09-07
Teemu Murtola
Re
s
tructure fat
a
l
e
rro
r
formatting
.
commit
|
commitdiff
|
tree
2012-09-07
Teemu Mur
t
ola
More fe
a
t
u
res
f
or
TextLineWrappe
r
.
commit
|
commitdiff
|
tree
2012-09-04
Teemu Mur
t
ola
All
o
w 'at
o
mname' and
'ato
m
type' in selection
s
.
commit
|
commitdiff
|
tree
2012-08-31
Teemu Murto
l
a
Reorganize Command
L
ineHelpWriter implementa
t
ion
.
commit
|
commitdiff
|
tree
2012-08-31
Teemu Murtola
Remove
o
bs
o
lete
.
gitignore entries
.
commit
|
commitdiff
|
tree
2012-08-30
Teemu Murtola
Mo
r
e
gen
e
ric way to obtain OptionInfo
f
or
options
.
commit
|
commitdiff
|
tree
2012-08-30
Te
e
mu Murtola
Fix Selecti
o
nParserParameter move constructor problem
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murtol
a
Enable C++ use
i
n select
i
on methods
.
commit
|
commitdiff
|
tree
2012-08-28
T
eemu Murtola
Add
s
y
nt
a
x to force
s
electi
o
n string
m
atc
h
ing mode
.
commit
|
commitdiff
|
tree
2012-08-28
Te
e
mu
Mu
r
t
o
la
Remove remaining GMX_ERROR uses
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murtola
Fix in
t
ernal
error with selectio
n
"re
s
na
m
e help"
.
commit
|
commitdiff
|
tree
2012-08-28
T
e
em
u
Mu
r
tola
Hand
l
e
SelectionParserParam
e
te
r
as a value type
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murtola
C++ clas
s
es
for selection pa
r
ser val
u
e
s
.
commit
|
commitdiff
|
tree
2012-08-28
Te
e
mu Murtola
C
++
c
lasse
s
f
o
r s
e
le
c
tion parser pa
r
ame
t
e
rs
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murtola
C
+
+
classes for se
l
ection
parser symbol table
.
commit
|
commitdiff
|
tree
2012-08-28
Te
e
mu Mu
r
tola
Ration
a
lize
selec
t
ion elem
e
nt
name hand
l
ing
.
commit
|
commitdiff
|
tree
2012-08-28
T
e
e
m
u
Murtola
Moved selection parser helpe
r
s into separate file
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murt
o
l
a
U
se sma
r
t pointers to m
a
nage the select
i
on tree
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Murtol
a
R
emove most uses o
f
t_selelem::refcount
.
commit
|
commitdiff
|
tree
2012-08-28
Teemu Mu
r
to
l
a
Added a sfree_guard for exception safety
.
commit
|
commitdiff
|
tree
2012-08-08
Teemu Murtola
I
mpro
v
e the build syste
m
for gmx_heade
r
_config
.
h
.
commit
|
commitdiff
|
tree
2012-08-05
Teemu Murtola
Imp
r
ove Dox
y
g
e
n outp
u
t layout
.
commit
|
commitdiff
|
tree
2012-08-05
Te
e
mu
Mur
t
o
la
Cl
a
r
ify
T
estF
i
l
e
Manag
e
r
naming and comments
.
commit
|
commitdiff
|
tree
2012-07-29
Teemu M
u
rt
o
la
Reorganize Doxyg
e
n
b
uild
.
commit
|
commitdiff
|
tree
2012-07-27
Tee
m
u Mu
r
tola
F
i
x
clang 3
.
2 w
a
rning
s
.
commit
|
commitdiff
|
tree
2012-07-27
Teemu Murtola
Fix a few doxyge
n
warning
s
.
commit
|
commitdiff
|
tree
2012-07-24
Teemu Murtola
Merge remo
t
e-tr
a
cking bran
c
h 'gerrit/release-4-6'
commit
|
commitdiff
|
tree
2012-07-15
T
eemu
Murtola
Draft
support for multiple h
e
lp outp
u
t formats
.
commit
|
commitdiff
|
tree
2012-07-15
Teemu
M
u
rtola
R
e
mov
e
d commas from
gmx_hbond OpenMP constructs
.
commit
|
commitdiff
|
tree
2012-07-11
T
eemu M
u
rtola
I
mp
r
ove o
p
tion init
i
alization
i
n tr
a
j
.
analysi
s
.
commit
|
commitdiff
|
tree
2012-07-09
Teemu Murtola
Fix
m
em
o
ry error wit
h
complex boolean
s
electi
o
ns
.
commit
|
commitdiff
|
tree
2012-07-08
Tee
m
u Murto
l
a
Ex
t
ension completion
for
F
ileNameOption
.
commit
|
commitdiff
|
tree
2012-07-06
Teemu
M
ur
t
o
la
B
e
tter invalid option value handling
.
commit
|
commitdiff
|
tree
2012-07-06
Teem
u
Murtola
Remove remaining und
e
r
s
core-
p
ref
i
xed C++ symbols
.
commit
|
commitdiff
|
tree
2012-07-06
Teemu
M
u
rtol
a
Merg
e
"T
e
s
t
framework
for TrajectoryAnalysi
s
Mod
u
l
es
.
"
commit
|
commitdiff
|
tree
2012-07-06
T
e
e
m
u Murtola
Test fr
a
mework f
o
r TrajectoryA
n
alysisModule
s
.
commit
|
commitdiff
|
tree
2012-07-05
Teemu Murtola
Extract doxygen documen
t
ation for static
s
ymbo
l
s
.
commit
|
commitdiff
|
tree
2012-07-04
Teemu Murtola
Fix most doxygen warning
s
.
commit
|
commitdiff
|
tree
2012-07-03
Teem
u
Murtola
Im
p
r
o
ve ProgramInfo and use i
t
e
v
er
y
where
.
commit
|
commitdiff
|
tree
2012-07-03
Teemu Murtola
Error/excepti
o
n handling
i
mprovements
.
commit
|
commitdiff
|
tree
2012-07-03
Tee
m
u M
u
rtola
Always build
t
h
r
ead
_
mpi thre
a
ding int
o
libgromacs
.
commit
|
commitdiff
|
tree
2012-06-28
T
eemu Murtola
Remove more under
s
core-prefi
x
e
d
C++ symbols
.
commit
|
commitdiff
|
tree
2012-06-27
Teemu Murtola
Use VERSIO
N
_L
E
SS
in the version
d
etection code
.
commit
|
commitdiff
|
tree
2012-06-26
T
eemu
Murtola
Update CPac
k
p
a
c
kage version
.
commit
|
commitdiff
|
tree
2012-06-26
Teemu Mur
t
ola
Make
C
+
+11 test quiet after the first cmake run
.
commit
|
commitdiff
|
tree
2012-06-26
Teemu Murtola
Merge "Merge remote-tracking branc
h
'origin
/
rel
e
ase
.
.
.
commit
|
commitdiff
|
tree
2012-06-24
Teemu Mu
r
tola
Me
r
g
e
rem
o
te
-
tracking bra
n
ch 'ge
r
r
i
t/re
l
ease-4-
6
'
commit
|
commitdiff
|
tree
2012-06-22
Teemu Murtola
I
n
crease cove
r
ate o
f
selection u
n
i
t
t
ests
.
commit
|
commitdiff
|
tree
2012-06-20
Teemu M
u
rtola
M
ake the selection parser exception-proof
.
commit
|
commitdiff
|
tree
2012-06-20
Teemu
Murtola
Use
p
ush parser for selection parsing
.
commit
|
commitdiff
|
tree
2012-06-20
Teem
u
Murtola
Add strin
g
u
tility fun
c
tio
n
s
f
or suffi
x
handl
i
ng
.
commit
|
commitdiff
|
tree
2012-06-20
T
eem
u
Murt
o
l
a
Rename format
.
h
to more generic
st
r
i
ngutil
.
h
.
commit
|
commitdiff
|
tree
2012-06-20
Tee
m
u Murto
l
a
Clean up
o
ption and selection flags
.
commit
|
commitdiff
|
tree
2012-06-20
Teemu Mu
r
tola
Remove (part of)
underscore-p
r
efixed
C
++ symbols
.
commit
|
commitdiff
|
tree
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