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Make use of recent changes to prepareKernelArguments(...)
2019-08-25
A
r
t
em Zhmurov
M
ake use of recen
t
chang
e
s to prepareKernelArguments
.
.
.
commit
|
commitdiff
|
tree
2019-08-25
Artem Zhmuro
v
M
i
sceleneous im
p
rove
m
en
t
s to th
e
Leap Frog tests
commit
|
commitdiff
|
tree
2019-08-20
M
ark Abraham
Apply clang-tidy-8 read
a
bility-upperca
s
e
-literal-suffix
commit
|
commitdiff
|
tree
2019-08-20
Mark Ab
r
a
h
am
Use potentia
l
-shift as defau
l
t modif
i
er
commit
|
commitdiff
|
tree
2019-08-09
B
erk Hess
Move bond
e
d functio
n
table into bonded
.
cpp
commit
|
commitdiff
|
tree
2019-08-08
Mark Abraham
Initiali
z
e gmx_eki
n
da
t
a_t and t_vcm properly
commit
|
commitdiff
|
tree
2019-08-06
Arte
m
Zhmurov
Fix for cmake li
s
t
s
in mdlib tests
commit
|
commitdiff
|
tree
2019-07-31
Artem
Zhmuro
v
C
ha
n
ge the file structure in
c
onstraints t
e
s
t
s
commit
|
commitdiff
|
tree
2019-07-31
S
zilárd
Páll
St
o
re w
c
ycle pointe
r
in
n
o
nbonded_verlet_t
commit
|
commitdiff
|
tree
2019-07-26
Artem Zhmurov
Rem
o
ve PImpl
s
c
a
ffolding
from
C
UDA version
o
f SETTLE
commit
|
commitdiff
|
tree
2019-07-05
Kevi
n
Boyd
Change er
r
or message wh
e
n
attempting to offload
to
.
.
.
commit
|
commitdiff
|
tree
2019-07-05
Artem Zhmur
o
v
Remove PImpl scaffoldin
g
from C
U
DA
v
e
r
sion
of LINCS
commit
|
commitdiff
|
tree
2019-07-04
Artem Zhmur
o
v
Use reallocateDevi
c
eBuffer(
.
.
.
) in CUDA
v
ersion of
.
.
.
commit
|
commitdiff
|
tree
2019-07-03
Ar
t
em
Z
hmurov
Early
exit for
CUDA versio
n
s of SE
T
TLE a
n
d
L
INCS
commit
|
commitdiff
|
tree
2019-07-03
Artem Zh
m
urov
M
e
m
ory m
a
nagem
e
nt fixes i
n
CUDA version of
L
I
NCS
commit
|
commitdiff
|
tree
2019-06-28
S
z
i
lárd Páll
Separate CPU NB
k
erne
l
and buffer clearing s
u
b
counters
commit
|
commitdiff
|
tree
2019-06-28
Ma
g
nus
Lundb
o
rg
F
u
sed GP
U
b
o
nded kernel
s
commit
|
commitdiff
|
tree
2019-06-18
A
r
tem
Zhmurov
Combi
n
e CU
D
A Leap-Frog, LINCS and SETTLE
.
I
.
commit
|
commitdiff
|
tree
2019-05-24
Artem Zhmurov
Clarify which of
t
he main energ
y
terms are
pr
i
nted
.
commit
|
commitdiff
|
tree
2019-05-13
Paul Baue
r
F
i
x math for
m
att
i
ng in reference manua
l
commit
|
commitdiff
|
tree
2019-05-12
Artem
Z
h
m
ur
o
v
C
U
D
A
v
er
s
i
o
n of Leap-Frog integr
a
tor with basic tes
t
s
commit
|
commitdiff
|
tree
2019-05-06
Mark Abraham
Improve
h
o
w mdrun
-
noappend names outp
u
t files
commit
|
commitdiff
|
tree
2019-05-02
A
r
tem Zhmu
r
ov
Us
e
tes
t
with paramete
r
s for EnergyOutput
commit
|
commitdiff
|
tree
2019-04-30
Artem Zhmuro
v
C
U
DA ve
r
sion of
SETTLE algorithm
w
i
t
h ba
s
ic t
e
sts
commit
|
commitdiff
|
tree
2019-04-29
Artem Zh
m
urov
Fix f
o
r the CUDA v
e
rs
i
on of LINCS
commit
|
commitdiff
|
tree
2019-04-28
Artem Zhm
u
ro
v
CUDA vers
i
on of LINCS
const
r
aints
.
commit
|
commitdiff
|
tree
2019-04-04
Carsten Kutzner
Early exit from mdr
u
n if g
r
o
u
p s
c
heme i
s
d
e
tected in
.
.
.
commit
|
commitdiff
|
tree
2019-04-04
Arte
m
Zhmurov
Remo
v
e isPressureCouplingSte
p
(
.
.
.
)
commit
|
commitdiff
|
tree
2019-04-04
Artem Zhmurov
Remo
v
e
isTemperatur
e
C
oupl
i
ngStep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-03-13
Artem Zhmurov
Basic routin
e
s to h
a
ndle period
i
c bo
u
ndar
y
.
commit
|
commitdiff
|
tree
2019-02-19
Ar
t
em Zhmurov
PBC se
t
u
p
f
or
G
PU
i
s moved i
n
to pbcutils
.
commit
|
commitdiff
|
tree
2019-02-13
Artem
Zhmurov
Ignore
V
isu
a
l
Stu
d
io Co
d
e
m
etadata
.
commit
|
commitdiff
|
tree