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Switch to CUDA 9.2 + gcc 7
2018-05-29
Szilárd Pál
l
Switch to CUDA 9
.
2 + gcc 7
commit
|
commitdiff
|
tree
2018-04-26
Szilárd Páll
Bump required
CU
D
A vers
i
on
t
o 7
.
0
commit
|
commitdiff
|
tree
2018-04-23
S
z
ilá
r
d Páll
Fix
i
cc warning in post-submi
t
commit
|
commitdiff
|
tree
2018-04-21
Szilárd Páll
Add post-submit wit
h
A
RM
H
PC Tool
c
hain
commit
|
commitdiff
|
tree
2018-04-21
Szilárd P
á
ll
Tw
e
ak PME ru
n
m
o
d
e checks
commit
|
commitdiff
|
tree
2018-04-20
S
z
ilá
r
d
Páll
M
i
n
o
r f
i
x for pre-submit matrix docs
commit
|
commitdiff
|
tree
2018-04-19
S
zilárd Páll
Move the
PME GPU cl
e
a
ri
n
g to t
h
e end of the step
commit
|
commitdiff
|
tree
2018-04-16
Szilárd Pál
l
Add
post-sub
m
it test with h
w
l
o
c off
commit
|
commitdiff
|
tree
2018-04-13
S
z
ilárd
Páll
U
s
e
t
rivalue option for
G
MX_HW
L
OC
commit
|
commitdiff
|
tree
2018-04-05
S
zilárd Páll
Refa
c
tor
c
j prel
o
ad in the
nonbonded
OpenCL kernels
commit
|
commitdiff
|
tree
2018-03-29
S
zilárd Páll
Tweak/enabl
e
icc
18
p
ost-submit tests
commit
|
commitdiff
|
tree
2018-03-29
Szilár
d
P
ál
l
Switch CUDA
9
.
0
/gcc
5
tes
t
to CUDA 9
.
1/gcc 6
commit
|
commitdiff
|
tree
2018-03-13
Szi
l
árd Páll
Require OpenCL 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Sz
i
l
árd Páll
Fix clang 6
.
0
with CU
D
A 9
.
0
commit
|
commitdiff
|
tree
2018-03-12
Szi
l
á
r
d Pá
l
l
A
v
oid icc-specific -ma
r
ch=core-av
x
2 flag with gcc/cl
a
ng
commit
|
commitdiff
|
tree
2018-03-06
S
z
ilárd Pá
l
l
Extend
"F
i
n
ding
out ho
w
t
o
run mdrun better" sec
t
ion
commit
|
commitdiff
|
tree
2018-03-05
Szi
l
ár
d
Páll
Add to th
e
c
o
n
tributor section
commit
|
commitdiff
|
tree
2018-02-21
S
zil
á
rd Páll
Switch pre-
s
ubmit CUDA 8
.
0
test to 9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szi
l
árd Pá
l
l
Avoid aborting
m
d
r
u
n
when GP
U
s
anity
check detects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szi
l
árd Páll
Remove barriers prev
e
nting tex
t
ure r
e
fer
e
nce rac
e
s
commit
|
commitdiff
|
tree
2018-02-12
Szil
á
r
d P
á
l
l
Remove si
n
gle/m
u
lti compilation un
i
t swit
c
hing
logic
commit
|
commitdiff
|
tree
2018-02-12
Szi
l
á
r
d Páll
Remov
e
texture refer
e
nce support in the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szi
l
árd Pá
l
l
Call G
P
U
profiler reset
on separate PME ranks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
User
g
u
i
d
e updates to GPU s
e
ctio
n
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
R
e
lease no
t
es
tweaks
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lárd Páll
Install
g
uide update
s
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
E
n
v
iron
m
ent variab
l
e docs maintenance
commit
|
commitdiff
|
tree
2017-12-10
Szilárd Páll
Disable
d
efault-on N
V
ML sup
p
ort in CM
a
ke
commit
|
commitdiff
|
tree
2017-12-06
Szilár
d
Páll
Imp
l
e
ment alternati
n
g GPU wait
commit
|
commitdiff
|
tree
2017-11-28
Szilárd
P
áll
Separate loca
l
GPU NB wai
t
from emula
t
ion
l
a
unch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Páll
Refactor GPU rolling prune launch
commit
|
commitdiff
|
tree
2017-11-27
Szi
l
árd Páll
Time FFT/gather in m
i
x
e
d mode
commit
|
commitdiff
|
tree
2017-11-24
S
z
il
á
rd Páll
Add GPU
s
h
arin
g
p
o
s
t-submit config
commit
|
commitdiff
|
tree
2017-11-23
Szilárd Pál
l
Move GPU FFT/gather
lau
n
ch after GPU nonbonded
s
commit
|
commitdiff
|
tree
2017-11-07
Szi
l
árd Páll
Use
-
mavx
2
-mfma instead o
f
-
m
arch
wit
h
AVX
2
commit
|
commitdiff
|
tree
2017-11-07
Szilá
r
d Páll
Mer
g
e common nbnxn CUDA/
O
penCL
G
PU wait co
d
e-paths
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Add wallcycle timer
f
or the
PME GP
U
F reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
S
plit off nbnxn G
P
U
t
iming
a
n
d stag
i
ng reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Deduplicate CUDA and OpenCL timer stru
c
t
commit
|
commitdiff
|
tree
2017-10-31
Szil
á
rd Páll
Fix n
s
tlist incre
a
se warning pri
n
t
commit
|
commitdiff
|
tree
2017-10-31
Szilárd P
á
ll
Ch
e
ck CUD
A
a
v
ailable/compile
d
cod
e
com
p
atibility
commit
|
commitdiff
|
tree
2017-10-31
S
zilárd
P
áll
Fix
n
stlist increase
warning print
commit
|
commitdiff
|
tree
2017-10-26
Szilárd Páll
Reor
g
anize P
M
E GPU launch
commit
|
commitdiff
|
tree
2017-10-23
Szilárd Pál
l
Eli
m
inate some OC
L
/
C
UDA cod
e
c
o
d
e
d
uplication
commit
|
commitdiff
|
tree
2017-10-19
S
z
i
l
árd P
á
ll
D
i
sable OpenMP
w
ith clang 3
.
4
p
o
st-submit confi
g
commit
|
commitdiff
|
tree
2017-10-19
S
zilá
r
d Pál
l
Remove u
n
ised OpenC
L
debuggin
g
helpers
commit
|
commitdiff
|
tree
2017-10-12
Szilárd Páll
Remov
e
t
he s
i
ze_t from t
h
e PME g
a
t
h
e
r
CUDA
k
enels
commit
|
commitdiff
|
tree
2017-10-05
Szilá
r
d
Páll
Refactor sca
l
ed
b
ox ha
n
d
l
ing for
P
M
E
/
Ew
a
ld
commit
|
commitdiff
|
tree
2017-10-05
S
z
ilárd Páll
Fix pair
l
ist array a
s
se
r
t
i
on
commit
|
commitdiff
|
tree
2017-10-05
Sz
i
l
á
rd Pál
l
Avoid
-Wmissing-p
r
ototypes warnings in cl
a
ng CU
D
A
b
u
i
lds
commit
|
commitdiff
|
tree
2017-10-03
Szilárd P
á
ll
Move Ewald splitting-r
e
l
ated co
d
e to
e
wald-utils
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
E
nab
l
e comp
i
lin
g
CUDA
d
e
v
ice
c
ode
with cl
a
ng
commit
|
commitdiff
|
tree
2017-09-28
Sz
i
lárd
Páll
Correct
m
i
splaced CUDA timing event record
commit
|
commitdiff
|
tree
2017-09-26
Szilárd Páll
Rename GP
U
launch/wait cycle coun
t
e
r
s
commit
|
commitdiff
|
tree
2017-09-18
Szilárd Pá
l
l
Minor ref
a
ctor
i
ng of CUDA
non-bon
d
ed kernels
commit
|
commitdiff
|
tree
2017-09-14
Szi
l
árd Páll
CUDA 9/
V
olta
s
upp
o
rt for the prun
i
n
g k
e
r
nel
commit
|
commitdiff
|
tree
2017-09-12
Szilárd Páll
Merge branch
're
l
ease-2016'
commit
|
commitdiff
|
tree
2017-09-11
Sz
i
lárd Páll
NVIDIA Volta performance t
w
e
aks
commit
|
commitdiff
|
tree
2017-08-29
Szi
l
á
rd
P
á
ll
Fix typo and tweak env var d
o
cs
commit
|
commitdiff
|
tree
2017-08-29
S
z
i
l
árd Páll
A
v
oi
d
division by zero
i
s pru
n
ing part calculation
commit
|
commitdiff
|
tree
2017-08-21
Szilá
r
d
P
á
ll
Add Op
e
nCL p
r
uning k
e
rnel
s
and launch/timing
logic
commit
|
commitdiff
|
tree
2017-08-18
Szi
l
á
rd Pál
l
Improve
aw
k
ward handling of GM
X
_CUDA_TARGET* hel
p
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Páll
Add CUDA pruning kern
e
ls and launch/ti
m
i
ng logic
commit
|
commitdiff
|
tree
2017-07-27
Szilárd Páll
Inform user
s
about
t
h
e
e
nd of
r
un DLB state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Páll
Add
A
RM_NEON_A
S
IM
D
post-
s
ubmit tes
t
commit
|
commitdiff
|
tree
2017-06-21
Szilárd
P
áll
Re-enable lost DD warning + minor code modernization
commit
|
commitdiff
|
tree
2017-06-20
S
zilárd Pá
l
l
Re-
e
nable accidentally lost
DD warning
commit
|
commitdiff
|
tree
2017-06-20
S
z
ilárd P
á
l
l
Refactoring + cl
a
rification o
f
DLB state handling
commit
|
commitdiff
|
tree
2017-06-15
Szilárd Páll
A
llo
w
disablin
g
the explicit use of CUDA
t
e
xtures
commit
|
commitdiff
|
tree
2017-06-07
S
zilá
r
d P
á
ll
Su
p
p
r
ess sm_2x deprecation warnin
g
w
i
th CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilá
r
d Páll
Add CUDA 8
.
0
+
SI
M
D p
r
e
-submit test
commit
|
commitdiff
|
tree
2017-06-02
Szilárd
P
áll
Add ARM_N
E
ON post-submit te
s
t
commit
|
commitdiff
|
tree
2017-05-29
Szilárd
P
ál
l
Quotes
are cool,
t
ypo-
f
ree ones are even "cooler"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd Páll
Add basic
d
oxyge
n
for the Ve
r
le
t
n
onbon
d
ed module
commit
|
commitdiff
|
tree
2017-03-29
S
zilárd Páll
Re
f
actor CUDA kernel use of tables
commit
|
commitdiff
|
tree
2017-03-29
S
z
ilárd Páll
Add CUDA util function for const
a
nt lo
a
ds
commit
|
commitdiff
|
tree
2017-03-25
S
z
ilárd Páll
Conditional twe
a
k
i
n
th
e
n
o
nbo
n
d
ed GPU kernels
commit
|
commitdiff
|
tree
2017-03-17
Szi
l
á
r
d
Páll
A
llo
w
bypassing
OpenCL d
e
vice compat
i
bility check
commit
|
commitdiff
|
tree
2017-03-16
Sz
i
l
árd Pá
l
l
Pr
i
nt code of unknown
O
p
enCL
e
rr
o
r
commit
|
commitdiff
|
tree
2017-03-09
Szilá
r
d
P
áll
Fix mdrun hangin
g
u
p
on exit w
i
th
s
ep PME ranks
commit
|
commitdiff
|
tree
2017-01-24
Sz
i
lár
d
P
á
ll
Rem
o
v
e unused arg
u
ment in GPU kernels
commit
|
commitdiff
|
tree
2016-12-09
Szilá
r
d
Pál
l
T
u
rn off hwloc su
p
p
o
rt whe
n
st
a
tic lib found
commit
|
commitdiff
|
tree
2016-11-17
Sz
i
lár
d
Páll
Correc
t
kernel launch
b
oun
d
s for CUDA sm_60
commit
|
commitdiff
|
tree
2016-11-01
Sz
i
lárd Páll
Merg
e
"Merge
bran
c
h release-20
1
6"
commit
|
commitdiff
|
tree
2016-10-28
Szil
á
rd
P
áll
GPU-relat
e
d
a
d
d
itions
t
o the
insta
l
l/user gu
i
de
commit
|
commitdiff
|
tree
2016-10-27
S
z
i
l
á
r
d Páll
Make -cl-
f
ast-relaxed-m
a
th d
e
f
a
ult
commit
|
commitdiff
|
tree
2016-10-26
S
z
ilárd Páll
A
d
d GMX_D
I
SABLE_GPU_TIMING e
n
v var
commit
|
commitdiff
|
tree
2016-10-09
Szilárd
P
áll
Corre
c
t kernel launch boun
d
s
for CU
D
A sm
_
6
0
commit
|
commitdiff
|
tree
2016-08-27
S
zilárd Páll
Make ASAN/TSAN/MSAN
build t
y
pes easier to discover
commit
|
commitdiff
|
tree
2016-07-08
S
z
ilárd
P
ál
l
Add PDF meta
d
a
t
a to the manual
commit
|
commitdiff
|
tree
2016-07-08
S
z
ilárd Páll
Us
e
r guide cla
r
ificati
o
n
s
commit
|
commitdiff
|
tree
2016-07-07
S
zilárd Pá
l
l
Add use
r
guide i
n
fo on
CUDA
application cl
o
cks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd Páll
Doc
u
m
ent GMX_GPU_APPLICATION_CLOC
K
S
commit
|
commitdiff
|
tree
2016-07-04
Szil
á
rd Páll
Disable
N
V
IDI
A
JI
T
cache
with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
Szilá
r
d Páll
Fix CUDA build with multiple
compilat
i
on
u
nits
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Pá
l
l
Add sup
p
o
r
t
f
o
r
CUDA C
C
6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szilá
r
d Páll
Add env
.
va
r
.
to enab
l
e
O
penC
L
ca
c
hing
commit
|
commitdiff
|
tree
2016-06-02
Sz
i
l
á
r
d Páll
Fix OpenCL binary cache file name
generati
o
n
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Remove CUD
A
host compi
l
er consistency
c
h
e
cks
commit
|
commitdiff
|
tree
2016-04-28
S
z
ilárd Páll
W
orkar
o
und for
g
cc false positive warning
commit
|
commitdiff
|
tree
next