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Precision fix for rescbt code.
2019-02-17
Sz
i
lárd Pá
l
l
I
m
prove GPU targ
e
t c
o
m
pati
b
ility error mes
s
age
commit
|
commitdiff
|
tree
2019-02-15
Sz
i
lárd Pál
l
E
xten
d
Gpu
E
v
e
ntSync
h
r
o
ni
z
er to allow on-device sync
commit
|
commitdiff
|
tree
2019-02-13
Sz
i
lárd Páll
Minor
r
efactoring in mdrunnner
commit
|
commitdiff
|
tree
2019-02-12
Szilárd Páll
Minor r
e
factor
of
g
puid / tas
k
m
apping
p
arsing
commit
|
commitdiff
|
tree
2019-01-21
Szilárd Páll
Add CUDA CC 7
.
5 (Turing) supp
o
r
t
wi
t
h
n
vcc
commit
|
commitdiff
|
tree
2019-01-04
Szilárd Pál
l
Fix form
a
tt
i
ng warning
commit
|
commitdiff
|
tree
2019-01-02
Szilárd P
á
ll
Fix clang 6 w
a
r
n
i
ng
commit
|
commitdiff
|
tree
2019-01-02
Szilárd P
á
ll
Do
no
t
w
h
itelist the use of Op
e
nCL 1
.
1
A
PI
commit
|
commitdiff
|
tree
2018-12-31
Szi
l
árd Páll
Fix release
n
o
te
s
t
y
po
commit
|
commitdiff
|
tree
2018-12-31
Szilárd Páll
A
d
d CUDA CC 7
.
5 (Turing) support wi
t
h nvcc
commit
|
commitdiff
|
tree
2018-12-27
Szilárd Páll
U
s
e
s
td::swap i
n
LINCS
commit
|
commitdiff
|
tree
2018-12-22
Szilárd Páll
Runtime c
h
eck of
device Ope
n
CL support
commit
|
commitdiff
|
tree
2018-12-21
Szil
á
r
d
Páll
Make jenk
i
ns own-f
f
tw verif
y
use loc
a
l tar
b
al
l
commit
|
commitdiff
|
tree
2018-12-20
Szilárd Páll
Fi
x
CUDA compiled target-dev
i
ce compati
b
ility
check
commit
|
commitdiff
|
tree
2018-12-20
S
zilárd P
á
ll
Correct CUDA compatibilit
y
check
commit
|
commitdiff
|
tree
2018-12-20
S
z
i
lárd Páll
Merg
e
"
Merge b
r
anc
h
r
e
lease-2018 into rele
a
se-2019
.
.
.
commit
|
commitdiff
|
tree
2018-12-18
Szilárd Páll
M
erge release-2019 branch int
o
master
commit
|
commitdiff
|
tree
2018-12-17
Szilár
d
Páll
Fix GMX
_
BUILD
_
O
WN_FF
T
W_URL CMake c
a
c
h
e entry ty
p
e
commit
|
commitdiff
|
tree
2018-12-14
S
zilárd Pá
l
l
Enable ARMPL in the a
r
mclang build
commit
|
commitdiff
|
tree
2018-12-13
Szilárd Pál
l
A
v
oid spurious tim
i
ng
in
bo
n
de
d
GPU launch subc
o
unte
r
commit
|
commitdiff
|
tree
2018-12-13
Szilárd Páll
Document the FP exception in cuFFT 7
.
0
commit
|
commitdiff
|
tree
2018-12-12
Sz
i
lárd Pá
l
l
Improve DLB report
/
note
commit
|
commitdiff
|
tree
2018-12-11
Szilárd
P
áll
Tweak th
e
bo
n
ded GP
U
energy
c
opy/wait operations
commit
|
commitdiff
|
tree
2018-12-06
Sz
i
lárd Páll
Add B
o
nded GPU launch overhead cycle
subc
o
unter
commit
|
commitdiff
|
tree
2018-12-06
Szil
á
rd
P
áll
Swap
t
h
e
o
rder o
f
GPU bonded an
d
n
o
n
bonde
d
l
a
u
nch
commit
|
commitdiff
|
tree
2018-12-06
S
z
ilá
r
d Pál
l
Fix co
n
d
iti
o
n
a
l
i
n
nonloca
l
nbnxn GPU work skipping
commit
|
commitdiff
|
tree
2018-12-06
S
z
i
l
árd Pá
l
l
Sp
l
i
t nbn
x
n
i
np
u
t copy and ke
r
n
e
l
launch
commit
|
commitdiff
|
tree
2018-12-05
S
zil
á
rd Páll
Correct t
h
read count in the PME GPU reducti
o
n
commit
|
commitdiff
|
tree
2018-11-27
Szilá
r
d Pál
l
Add ARM
P
L support to ad
m
i
n
s
cript
commit
|
commitdiff
|
tree
2018-11-27
S
zilárd Páll
Add
t
weaks to
s
u
pport ARMPL for FF
T
s
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
Re-enable the armclang pos
t
-submit build
commit
|
commitdiff
|
tree
2018-11-07
Szi
l
árd Páll
Eli
m
inate
ma
c
ro that exp
a
nds to v
a
r
ia
b
le
i
n
P
ME GPU
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
Ensure
m
inimum exec
width of
the PME OpenCL
k
e
rn
e
ls
commit
|
commitdiff
|
tree
2018-10-14
Szilárd Páll
Fix more
cla
n
g-6 warni
n
gs in CUDA code
commit
|
commitdiff
|
tree
2018-10-14
S
zilárd Páll
Moderni
z
e Op
e
nCL
memory allocati
o
n fl
a
gs
commit
|
commitdiff
|
tree
2018-10-10
Szi
l
á
r
d Páll
Swap custom OpenCL memset
k
e
r
nel
for
c
lEnque
u
eFillBuffer
commit
|
commitdiff
|
tree
2018-10-09
Szilárd P
á
ll
U
pdate regressiontest ref to download
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Páll
Tw
e
ak
F
indFFTW
API chec
k
s
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Páll
Fix clang-6
warnings
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Pá
l
l
R
eplace s
o
me NULL with nullptr in CUDA code
commit
|
commitdiff
|
tree
2018-10-07
Szilárd Páll
U
s
e
new GPU slave for AMD OpenCL verify runs
commit
|
commitdiff
|
tree
2018-10-05
Sz
i
lárd Páll
Update t
e
s
t
matrices
w
ith new GPU specifiers
commit
|
commitdiff
|
tree
2018-09-29
Szilá
r
d
Pál
l
Fix co
n
s
t
raint
s
cycle co
u
nting
commit
|
commitdiff
|
tree
2018-09-21
Szilárd Páll
Bump te
s
t ti
m
eout
only for OpenCL integr
a
tio
n
test
s
commit
|
commitdiff
|
tree
2018-08-28
Szi
l
árd Páll
Quie
t
cmake about clFFT not found after first
r
u
n
commit
|
commitdiff
|
tree
2018-08-21
Szilárd Páll
Request flush
i
n
g
denorms to z
e
ro in OpenCL
commit
|
commitdiff
|
tree
2018-08-20
S
z
ilárd Páll
Disable
single
compila
t
i
on
unit with C
U
DA
9
.
0
commit
|
commitdiff
|
tree
2018-08-15
S
z
i
l
ár
d
Páll
I
m
prove GPU detecti
o
n sanity check error
mess
a
ge
commit
|
commitdiff
|
tree
2018-07-30
Szilár
d
P
á
ll
Move out OpenC
L
device
util
s
fr
o
m vectype ops
commit
|
commitdiff
|
tree
2018-07-30
Szilárd
Páll
Imp
r
o
ve t
h
e rob
u
stness
o
f the nvcc
C
Ma
k
e check
commit
|
commitdiff
|
tree
2018-07-30
Szilárd
P
á
l
l
Fix nvcc
h
o
st com
p
iler ch
e
ck tr
i
gger
i
ng
commit
|
commitdiff
|
tree
2018-07-29
Sz
i
lár
d
Páll
Correc
t
i
o
n
s
t
o the user guide mdrun perf section
commit
|
commitdiff
|
tree
2018-06-12
Szilárd
P
áll
A
lso issue OMP_NUM_THREADS reading note to t
h
e log
commit
|
commitdiff
|
tree
2018-06-04
Szilárd Páll
F
ix
timing of c
l
FFT
k
ernels
commit
|
commitdiff
|
tree
2018-05-29
Szilá
r
d Páll
Switch to CUDA 9
.
2 +
g
cc 7
commit
|
commitdiff
|
tree
2018-04-26
Sz
i
lárd Páll
Bump required CUD
A
version to 7
.
0
commit
|
commitdiff
|
tree
2018-04-23
Szilárd Páll
Fix icc warning in post-submit
commit
|
commitdiff
|
tree
2018-04-21
Szilár
d
P
áll
Add p
o
st-submit with A
R
M
HPC Toolchain
commit
|
commitdiff
|
tree
2018-04-21
Szilár
d
Pál
l
Tweak PME run m
o
d
e
c
hecks
commit
|
commitdiff
|
tree
2018-04-20
Szilár
d
Pál
l
Mi
n
or fix for pre-su
b
m
i
t matrix
doc
s
commit
|
commitdiff
|
tree
2018-04-19
Szilárd P
á
l
l
Mo
v
e the
P
ME GP
U
clearing to the end of the step
commit
|
commitdiff
|
tree
2018-04-16
Szilárd Páll
Add po
s
t-submit test with h
w
loc off
commit
|
commitdiff
|
tree
2018-04-13
Szilárd Páll
Use trivalue option
for GMX
_
HWLOC
commit
|
commitdiff
|
tree
2018-04-05
Szilárd Páll
Refactor cj pr
e
l
oad
i
n th
e
non
b
onded
OpenCL kernels
commit
|
commitdiff
|
tree
2018-03-29
Sz
i
l
árd Pá
l
l
Twea
k
/enable i
c
c
1
8 post-submit
t
ests
commit
|
commitdiff
|
tree
2018-03-29
Szilár
d
Pá
l
l
Sw
i
tch CU
D
A 9
.
0/gcc 5
t
es
t
t
o
CUDA 9
.
1
/gcc 6
commit
|
commitdiff
|
tree
2018-03-13
Sz
i
l
á
r
d Páll
Requ
i
re Open
C
L 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Páll
Fix clang 6
.
0
wi
t
h CU
D
A 9
.
0
commit
|
commitdiff
|
tree
2018-03-12
Szilárd Pá
l
l
A
v
oid
i
cc-
s
pe
c
if
i
c -march=core
-
avx2 flag with gcc/clang
commit
|
commitdiff
|
tree
2018-03-06
Szilárd
P
á
l
l
Extend
"Findi
n
g out
how to run mdrun better" se
c
tio
n
commit
|
commitdiff
|
tree
2018-03-05
S
zilárd Pá
l
l
A
d
d to the co
n
trib
u
tor section
commit
|
commitdiff
|
tree
2018-02-21
Szilárd Páll
S
w
itch pr
e
-submi
t
CUDA 8
.
0 test to
9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Páll
Avoid abo
r
ting mdru
n
w
hen GPU sa
n
ity check det
e
c
ts
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szilárd
Páll
Remove
barriers preventing te
x
tu
r
e
r
e
ference races
commit
|
commitdiff
|
tree
2018-02-12
Szil
á
rd Páll
R
e
move sing
l
e/multi compil
a
ti
o
n un
i
t switc
h
ing logic
commit
|
commitdiff
|
tree
2018-02-12
Sz
i
l
á
rd Pá
l
l
Remove texture refe
r
enc
e
support in the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szilárd Páll
Ca
l
l
G
PU profi
l
e
r
r
eset on s
e
parate PME rank
s
commit
|
commitdiff
|
tree
2018-01-10
Szilárd P
á
ll
User guide up
d
ates to G
P
U section
commit
|
commitdiff
|
tree
2018-01-10
Szilá
r
d Páll
Releas
e
n
ote
s
t
weaks
commit
|
commitdiff
|
tree
2018-01-10
S
z
ilá
r
d Páll
I
n
st
a
ll g
u
ide
u
pdates
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
E
nvi
r
onment
variable do
c
s m
a
intenance
commit
|
commitdiff
|
tree
2017-12-10
Szil
á
rd Páll
Disable
d
e
fa
u
l
t-on
N
VML support
in CM
a
ke
commit
|
commitdiff
|
tree
2017-12-06
Szilárd Páll
Implement a
l
ternating GPU wai
t
commit
|
commitdiff
|
tree
2017-11-28
Szilá
r
d
P
ál
l
Separate
l
ocal GPU NB wai
t
f
rom emulation la
u
nch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd
Páll
Refa
c
t
o
r GPU
rolling prune la
u
nch
commit
|
commitdiff
|
tree
2017-11-27
Szilárd Páll
Tim
e
FFT/ga
t
her i
n
mixed mode
commit
|
commitdiff
|
tree
2017-11-24
Szilárd
Páll
Add GPU
sh
a
ring post-
s
ubm
i
t
c
on
f
ig
commit
|
commitdiff
|
tree
2017-11-23
Szilárd Páll
Move GPU FFT/
g
ather launch
a
fter GPU nonbondeds
commit
|
commitdiff
|
tree
2017-11-07
S
z
i
l
árd Páll
Use -mavx2 -mfma ins
t
ead of
-ma
r
ch wi
t
h AVX2
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
r
d
P
á
l
l
Merge commo
n
nbnxn CUDA/OpenC
L
G
P
U wait c
o
de-paths
commit
|
commitdiff
|
tree
2017-11-07
Szilárd P
á
ll
Add wallcycle timer for t
h
e PME GPU F reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
S
plit off nbn
x
n GPU tim
i
ng and sta
g
ing
r
e
duction
commit
|
commitdiff
|
tree
2017-11-07
S
z
ilárd
Pál
l
Deduplicate CUDA and OpenCL
t
i
m
e
r
struc
t
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Fix nstlist increase warning
p
rint
commit
|
commitdiff
|
tree
2017-10-31
S
zilárd Páll
Check CUDA
avai
l
able/com
p
iled code compa
t
ibility
commit
|
commitdiff
|
tree
2017-10-31
Szilá
r
d Páll
Fix nstlist increase warning p
r
int
commit
|
commitdiff
|
tree
2017-10-26
S
z
i
lárd Pál
l
Reorgan
i
ze PM
E
GP
U
launch
commit
|
commitdiff
|
tree
2017-10-23
S
z
i
l
árd Páll
Elimi
n
a
t
e some OCL/CUDA cod
e
c
o
d
e
duplication
commit
|
commitdiff
|
tree
2017-10-19
Szil
á
rd Pá
l
l
Disable OpenMP with clang 3
.
4 post-su
b
mit conf
i
g
commit
|
commitdiff
|
tree
2017-10-19
Szilárd P
á
ll
Remove u
n
ised OpenCL debu
g
g
i
n
g
helpe
r
s
commit
|
commitdiff
|
tree
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