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Use moltype directly for obtaining residueAtomRanges
2020-03-04
Magnus Lundborg
Separate A
W
H p
a
ra
m
eter reading and checking
commit
|
commitdiff
|
tree
2020-03-03
Magnus Lundborg
Store dHdL for all
ne
i
ghbor lambdas
commit
|
commitdiff
|
tree
2020-02-25
M
a
gnus Lundborg
Fix out of
s
yn
c
c
h
e
c
kpoint fi
l
es in s
i
mulat
i
ons sharing
.
.
.
commit
|
commitdiff
|
tree
2020-01-29
Magnus Lundborg
More
S
IMD preparat
i
ons in the FE
calculations
commit
|
commitdiff
|
tree
2020-01-24
Magnus Lundborg
Re
m
oved SC
R
Power
4
8 from FEP
kernel
commit
|
commitdiff
|
tree
2020-01-23
Magnus Lundborg
Minor co
s
me
t
i
c improvements in AW
H
commit
|
commitdiff
|
tree
2019-09-24
Magnus Lundborg
Ad
d
.
p
a
rt
0
0
0
1
.
t
o file
s
from
t
he first
r
un with -noappend
.
commit
|
commitdiff
|
tree
2019-09-11
Magnus
L
u
nd
b
o
r
g
Tidy up t
h
e FE
k
ernel
commit
|
commitdiff
|
tree
2019-09-10
Magnus Lun
d
b
o
r
g
M
o
r
e
t
e
mpl
a
ting
of gmx_nb_f
r
ee
_
energy_k
e
rnel()
commit
|
commitdiff
|
tree
2019-09-04
Magnus Lundbor
g
Inline functions of calcul
a
tio
n
s of FE interaction
.
.
.
commit
|
commitdiff
|
tree
2019-08-30
Magnus Lund
b
org
Changed so
m
e variables from SCRea
l
t
o real i
n
FE kernel
.
commit
|
commitdiff
|
tree
2019-07-03
Ma
g
nus Lundborg
V
e
ct
o
rize GPU bonded data
.
commit
|
commitdiff
|
tree
2019-06-30
Magnus L
u
ndbor
g
Clean
i
ng up the GPU bonde
d
k
e
rne
l
commit
|
commitdiff
|
tree
2019-06-28
Mag
n
u
s
Lun
d
bo
r
g
Fused GP
U
bonded k
e
rnels
commit
|
commitdiff
|
tree
2018-12-14
Magnus Lundborg
Set HA
V
E_LMFIT
p
roperly
commit
|
commitdiff
|
tree
2018-11-29
Mag
n
us L
u
ndborg
Make pull with
CO
M
from
pre
v
ious step w
o
r
k
w
i
th MPI
commit
|
commitdiff
|
tree
2018-10-16
Magnu
s
Lundborg
Move gmx_ffparams_t to forcefield
p
ar
a
m
e
t
er
s
commit
|
commitdiff
|
tree
2018-10-15
M
a
gnus Lu
n
dborg
Enab
l
e output of avera
g
e pull fo
r
c
e
a
n
d positions
.
commit
|
commitdiff
|
tree
2018-10-03
Magnus Lundborg
Allo
w
using COM of previo
u
s step as
PB
C
refe
r
ence
commit
|
commitdiff
|
tree
2018-09-26
Magnus Lundborg
Added pullCheckPbcWithinGroup() t
o
check o
n
e grou
p
commit
|
commitdiff
|
tree
2018-09-25
Magnu
s
Lundborg
Ad
d
m
argin as input to pullGroupObeysPbcR
e
strictio
n
s
commit
|
commitdiff
|
tree
2018-09-21
M
a
gnus Lundborg
F
i
xes a bu
g
in pull g
r
oup size calculation
commit
|
commitdiff
|
tree
2018-09-07
Magnus Lundborg
Check q p
e
rturbation when PME on GP
U
is tested
commit
|
commitdiff
|
tree
2018-06-04
M
ag
n
us Lundbor
g
Write
l
a
mbdas and box to TNG at
correct
interv
a
ls
commit
|
commitdiff
|
tree
2018-03-29
Magnus Lundbo
r
g
Improved check of if only
f
orces are comput
e
d in do_pairs()
commit
|
commitdiff
|
tree
2017-12-05
Magnus Lundbo
r
g
S
I
MD
a
ccelerated Urey-Bradley
commit
|
commitdiff
|
tree
2017-11-18
Magnus L
u
ndborg
Add
e
d
Magnus Lun
d
b
org
a
s
c
o
ntributor in the
man
u
al
.
Added
Magnus Lundborg
as contributor in the manual.
commit
|
commitdiff
|
tree
2017-11-08
Ma
g
nus Lun
d
bor
g
Update
t
o TNG v 1
.
8
.
1
commit
|
commitdiff
|
tree
2017-10-13
M
a
gnus Lundborg
Do n
o
t includ
e
he
a
ders r
e
lated to O
b
servablesHistory
commit
|
commitdiff
|
tree
2017-10-03
Magnus Lundbor
g
Write atom masses a
n
d pa
r
tial charg
e
s to TNG
commit
|
commitdiff
|
tree
2017-06-11
Mag
n
us
L
undborg
Updated TNG
to ver
s
io
n
1
.
8
commit
|
commitdiff
|
tree
2015-12-05
Mag
n
us
L
undborg
Writ
e
f
o
rces a
n
d veloc
i
ties to comp
r
essed TNG
.
commit
|
commitdiff
|
tree
2015-11-30
M
agnus Lundborg
Fi
x
ed ty
p
os i
n
output
.
commit
|
commitdiff
|
tree
2015-11-25
Magn
u
s Lun
d
borg
U
s
e
local variables
i
nstead
of those i
n
*i
r
.
commit
|
commitdiff
|
tree
2015-06-24
Magnus
Lundborg
Upd
a
te header when appendi
n
g to TNG file
.
commit
|
commitdiff
|
tree
2015-06-12
Magnu
s
Lundborg
TNG
version 1
.
7
.
6
commit
|
commitdiff
|
tree
2015-05-16
Ma
g
nus Lundborg
TNG
v
ersion 1
.
7
.
5
commit
|
commitdiff
|
tree
2015-04-21
Magnus Lundb
o
rg
TN
G
vers
i
on
1
.
7
.
3
commit
|
commitdiff
|
tree
2014-11-24
Magnus Lu
n
d
b
or
g
When writing TNG
t
he input m
u
s
t con
t
ain
m
olecule data
.
commit
|
commitdiff
|
tree
2014-09-02
Magnus Lund
b
org
T
NG
Fix for
GMX_DOUBL
E
builds
a
nd where ZLIB is n
o
t
.
.
.
commit
|
commitdiff
|
tree
2014-09-02
Ma
g
nus Lundborg
Fix data block length whe
n
uncompressi
n
g
T
N
G
d
ata
.
commit
|
commitdiff
|
tree
2014-09-01
Magnus Lundborg
TNG: Handle larg
e
f
iles on
32 bit s
y
st
e
m
s
.
commit
|
commitdiff
|
tree
2014-09-01
Magnus Lund
b
org
When writing
TNG
i
n
c
lude f
i
le closing
in wallc
y
cle
.
commit
|
commitdiff
|
tree
2014-08-21
Mag
n
us L
u
ndborg
F
i
xed TNG memory
a
lignment prob
l
em and reset pointers
.
commit
|
commitdiff
|
tree
2014-07-05
Ma
g
n
us Lundborg
F
i
x
b
u
g
causing
reading next frame no
t
t
o stop
.
commit
|
commitdiff
|
tree
2014-07-05
Magnus L
u
ndborg
F
i
x tng_num_frame_set
s
_
g
et()
w
i
t
h no frame sets
.
commit
|
commitdiff
|
tree
2014-06-28
M
agn
u
s
L
u
ndborg
U
p
date TNG buil
d
system
commit
|
commitdiff
|
tree
2014-06-24
Magnu
s
Lund
b
org
Improved check to decide if to add chain/resi
d
ue
.
commit
|
commitdiff
|
tree
2014-06-19
Ma
g
n
us Lundborg
Bumped the TNG librar
y
t
o
the latest ve
r
sion
.
commit
|
commitdiff
|
tree
2014-05-31
Magnus L
u
ndborg
Fix bug wri
t
ing TNG outp
u
t fro
m
dump
.
commit
|
commitdiff
|
tree
2014-05-31
Mag
n
us Lund
b
org
Bug fix i
n
the
T
N
G libr
a
ry to impro
v
e reading
.
commit
|
commitdiff
|
tree
2014-04-24
Ma
g
nus Lundb
o
rg
More effic
i
ent TNG selec
t
ion group creation
commit
|
commitdiff
|
tree
2014-04-16
Magnus Lundborg
Fixed bug inve
r
ting
c
ompressio
n
precisi
o
n
.
commit
|
commitdiff
|
tree
2014-03-01
Magnu
s
Lundborg
Bu
m
ped TN
G
to latest
v
er
s
ion
.
commit
|
commitdiff
|
tree
2014-02-13
Magnus Lundborg
One more bum
p
of the TNG versio
n
.
commit
|
commitdiff
|
tree
2014-02-13
Magnus Lundborg
R
e
mov
e
d opt
i
on to use OpenM
P
with the
TNG libra
r
y
.
commit
|
commitdiff
|
tree
2014-02-12
Magnus Lundborg
E
n
a
b
le TNG bu
i
lds on Window
s
by default
.
commit
|
commitdiff
|
tree
2014-02-12
M
agnus Lundbo
r
g
B
u
mped TN
G
t
o l
a
test version
.
commit
|
commitdiff
|
tree
2014-02-11
M
a
g
nus Lund
b
org
A
dde
d
i
nform
a
tion
about how to cite the
T
NG paper
.
commit
|
commitdiff
|
tree
2014-01-20
Magnus Lundborg
Add TN
G
w
ritin
g
and readin
g
support
commit
|
commitdiff
|
tree
2013-10-29
Magnus L
u
ndborg
Fixed
m
em
o
r
y
leak
i
n
g
mxdump
.
commit
|
commitdiff
|
tree
2013-09-02
M
a
gnus Lu
n
dborg
Set upper case of FFTW variable at the
r
ight pla
c
e
.
commit
|
commitdiff
|
tree
2013-04-29
Magnus Lundbo
r
g
Fixes "Fun
c
t
ion type
U
-B not impleme
n
ted
in ip_per
t
.
"
commit
|
commitdiff
|
tree