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2011-04-21	Sander Pronk	Fixed thread_mpi's Makefile.am to not include removed...	commit \| commitdiff \| tree
2011-04-21	Sander Pronk	Added prototypes for functions in md_support.c to mdrun.h	commit \| commitdiff \| tree
2011-04-20	Sander Pronk	Revert "NUMA aware memory allocators get called (for...	commit \| commitdiff \| tree
2011-04-20	Sander Pronk	NUMA aware memory allocators get called (for Windows).	commit \| commitdiff \| tree
2011-04-20	Sander Pronk	New thread_mpi library, with NUMA aware allocator for...	commit \| commitdiff \| tree
2011-04-01	Sander Pronk	Fixed g_pme_error to use MPI, but not threads.	commit \| commitdiff \| tree
2011-03-25	Sander Pronk	Fixed deallocation bug in energy history checkpoint	commit \| commitdiff \| tree
2011-03-21	Sander Pronk	The -version flag now prints more information.	commit \| commitdiff \| tree
2011-03-21	Sander Pronk	Fixed real/double issue in gmx_density	commit \| commitdiff \| tree
2011-03-17	Sander Pronk	Various fixes for Windows builds.	commit \| commitdiff \| tree
2011-03-16	Sander Pronk	mdrun -multi, multidir and replica exchange now exchange...	commit \| commitdiff \| tree
2011-03-15	Sander Pronk	Multisim simulations now all stop when the first one...	commit \| commitdiff \| tree
2011-03-11	Sander Pronk	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2011-03-10	Sander Pronk	More allocation fixes for NUMA allocator.	commit \| commitdiff \| tree
2011-03-10	Sander Pronk	Added documentation for multidir.	commit \| commitdiff \| tree
2011-03-10	Sander Pronk	Added more support for multidir.	commit \| commitdiff \| tree
2011-03-03	Sander Pronk	Replaced strdups with gmx_strdups so that they can...	commit \| commitdiff \| tree
2011-02-20	Sander Pronk	Minor fix for when write_dhdl_file=false and delta_lambda...	commit \| commitdiff \| tree
2011-02-10	Sander Pronk	Fixed a bug in g_energy -odh	commit \| commitdiff \| tree
2010-11-19	Sander Pronk	Fixed TMPI_WAIT_FOR_NO_ONE deadlock.	commit \| commitdiff \| tree
2010-11-02	Sander Pronk	Fixed double precision energy file reading + box matrix...	commit \| commitdiff \| tree
2010-10-30	Sander Pronk	Added Windows macro for snprintf.	commit \| commitdiff \| tree
2010-10-20	Sander Pronk	file reading error messages in g_bar less confusing.	commit \| commitdiff \| tree
2010-10-18	Sander Pronk	Tries recovery during errors in .edr files.	commit \| commitdiff \| tree
2010-10-18	Sander Pronk	Better time checks in .edrs wihtout version numbers.	commit \| commitdiff \| tree
2010-10-18	Sander Pronk	More stringent .edr file data checks.	commit \| commitdiff \| tree
2010-10-08	Sander Pronk	Now really fixed locking of log file.	commit \| commitdiff \| tree
2010-10-07	Sander Pronk	cmake LIB environment variable check, and GMXRC check...	commit \| commitdiff \| tree
2010-10-05	Sander Pronk	Modified FORTRAN and threads warning.	commit \| commitdiff \| tree
2010-09-30	Sander Pronk	Error message on enabling FORTRAN and threads.	commit \| commitdiff \| tree
2010-09-22	Sander Pronk	Added missing includes to gmx_tune_pme.c	commit \| commitdiff \| tree
2010-09-17	Sander Pronk	Fixed more checkpointing issues with .edr dh data.	commit \| commitdiff \| tree
2010-09-17	Sander Pronk	Checkpoints backward-compatible + more consistency...	commit \| commitdiff \| tree
2010-09-17	Sander Pronk	Fixed checkpointing bug with g_bar energies	commit \| commitdiff \| tree
2010-09-16	Sander Pronk	eneconv now warns when throwing away blocks with dH...	commit \| commitdiff \| tree
2010-09-16	Sander Pronk	Improved performance of g_bar while reading .edr files...	commit \| commitdiff \| tree
2010-09-15	Sander Pronk	More scheduler-friendly locks for gmxfio	commit \| commitdiff \| tree
2010-09-09	Sander Pronk	Fixed a deadlock while closing files.	commit \| commitdiff \| tree
2010-09-09	Sander Pronk	Fixed segv in trajana due to wrong cell index calculation.	commit \| commitdiff \| tree
2010-09-08	Sander Pronk	Fixed segv while reading overly long lines in xvgr.c	commit \| commitdiff \| tree
2010-09-07	Sander Pronk	Fixed segfault in g_bar with unequally distributed...	commit \| commitdiff \| tree
2010-09-06	Sander Pronk	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-09-06	Sander Pronk	Fixed reading of older .xvg file formats in g_bar	commit \| commitdiff \| tree
2010-09-06	Sander Pronk	Fixed misinterpretation of -b and -e in g_bar.	commit \| commitdiff \| tree
2010-09-03	Sander Pronk	Added missing windows thread files to distribution...	commit \| commitdiff \| tree
2010-09-01	Sander Pronk	Shared libraries off by default on Windows.	commit \| commitdiff \| tree
2010-09-01	Sander Pronk	Added support for PGI atomics in thread_mpi.	commit \| commitdiff \| tree
2010-09-01	Sander Pronk	Final thread_mpi fixes (ppc works, no deadlocks on...	commit \| commitdiff \| tree
2010-09-01	Sander Pronk	Code reorg in thread_mpi	commit \| commitdiff \| tree
2010-08-31	Sander Pronk	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-31	Sander Pronk	Fixed memory ordering issue on ppc with gcc&xlc.	commit \| commitdiff \| tree
2010-08-31	Sander Pronk	thread_mpi fixes: gcc works on power7, xlc still does...	commit \| commitdiff \| tree
2010-08-31	Sander Pronk	Fixed warning in gmx_energy	commit \| commitdiff \| tree
2010-08-30	Sander Pronk	grompp calculates output size with dh data estimate.	commit \| commitdiff \| tree
2010-08-30	Sander Pronk	Clearer error messages in g_energy.	commit \| commitdiff \| tree
2010-08-30	Sander Pronk	Fixed the g_energy -odh option to be less confusing.	commit \| commitdiff \| tree
2010-08-29	Sander Pronk	Made the dhdl_derivatives option do something when...	commit \| commitdiff \| tree
2010-08-27	Sander Pronk	Fixed begin and end times in g_bar.	commit \| commitdiff \| tree
2010-08-27	Sander Pronk	More documentation for g_bar.	commit \| commitdiff \| tree
2010-08-27	Sander Pronk	Some documentation changes.	commit \| commitdiff \| tree
2010-08-27	Sander Pronk	Some documentation changes.	commit \| commitdiff \| tree
2010-08-26	Sander Pronk	gmx_bar now works with derivative histogram sets.	commit \| commitdiff \| tree
2010-08-26	Sander Pronk	Free energy histogram bug fixes.	commit \| commitdiff \| tree
2010-08-26	Sander Pronk	derivative histograms are now written in both positive...	commit \| commitdiff \| tree
2010-08-26	Sander Pronk	g_bar reads dhdl.xvg files without derivatives.	commit \| commitdiff \| tree
2010-08-26	Sander Pronk	Free energy writing to ener.edr and four new options...	commit \| commitdiff \| tree
2010-08-24	Sander Pronk	Another try with xlc/ppc atomics..	commit \| commitdiff \| tree
2010-08-23	Sander Pronk	Modified memory barrier on ppc/xlc.	commit \| commitdiff \| tree
2010-08-23	Sander Pronk	Enabled gcc atomic intrinsics for gcc on ppc.	commit \| commitdiff \| tree
2010-08-23	Sander Pronk	More xlc ppc changes to thread_mpi	commit \| commitdiff \| tree
2010-08-23	Sander Pronk	Completely removed all occurrences of 'inline' for...	commit \| commitdiff \| tree
2010-08-20	Sander Pronk	Added support for new mdp options controlling free...	commit \| commitdiff \| tree
2010-08-19	Sander Pronk	Fixed get_libdir() PATH search.	commit \| commitdiff \| tree
2010-08-18	Sander Pronk	Cmake tests for SIGUSR1	commit \| commitdiff \| tree
2010-08-17	Sander Pronk	Fixed thread_mpi inline assembly issue and non-optimized...	commit \| commitdiff \| tree
2010-08-17	Sander Pronk	fsync fix for FAH core.	commit \| commitdiff \| tree
2010-08-16	Sander Pronk	Fixed xdr3dfcoord thread safety issues.	commit \| commitdiff \| tree
2010-08-16	Sander Pronk	Moved the OS-dependent part of gmx_fio_fsync() to futil.c	commit \| commitdiff \| tree
2010-08-14	Sander Pronk	Fixed an issue with gmx_copy_file that would allow...	commit \| commitdiff \| tree
2010-08-11	Sander Pronk	C++ type fixes in thread_mpi atomics.	commit \| commitdiff \| tree
2010-08-11	Sander Pronk	Cmake now honors CFLAGS/CXXFLAGS as much as it can.	commit \| commitdiff \| tree
2010-08-09	Sander Pronk	Small fix to deal with possible overflows in dh binning.	commit \| commitdiff \| tree
2010-08-09	Sander Pronk	Now correctly checkpoints on dhdl histograms/lists...	commit \| commitdiff \| tree
2010-08-06	Sander Pronk	BAR calculations can now store energy histograms in...	commit \| commitdiff \| tree
2010-08-02	Sander Pronk	Added an uninstall target to CMake builds.	commit \| commitdiff \| tree
2010-08-02	Sander Pronk	Added missing .h file.	commit \| commitdiff \| tree
2010-08-02	Sander Pronk	Fixed shared library build by removing references to...	commit \| commitdiff \| tree
2010-07-30	Sander Pronk	More onerous locking of open_files in gmx_fio.	commit \| commitdiff \| tree
2010-07-30	Sander Pronk	Fixed ffclose bug in futil.c, gmx_fio_close now checks...	commit \| commitdiff \| tree
2010-07-30	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Sander Pronk	Fixed a potential mutex problem in gmx_fio.c	commit \| commitdiff \| tree
2010-07-29	Sander Pronk	.edr block gmxdump fixes.	commit \| commitdiff \| tree
2010-07-27	Sander Pronk	Re-added sched.h define in config.h.cmakein.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Added support for Windows _fseeki64.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Windows fixes.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Fixed more thread_mpi installation issues.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Fixed thread_mpi distribution issues.	commit \| commitdiff \| tree
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