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2010-07-26	Sander Pronk	Fixed thread_mpi distribution issues.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Fixed faulty commit.	commit \| commitdiff \| tree
2010-07-26	Sander Pronk	Removed redundant header files from thread_mpi.	commit \| commitdiff \| tree
2010-07-25	Sander Pronk	Removed extraneous argument from filter_ter().	commit \| commitdiff \| tree
2010-07-24	Sander Pronk	New .edr file format: now supports blocks of arbitrary...	commit \| commitdiff \| tree
2010-07-22	Sander Pronk	Small bugfix for previous commit.	commit \| commitdiff \| tree
2010-07-22	Sander Pronk	Serialized access to FORTRAN bindings of gromacs's...	commit \| commitdiff \| tree
2010-07-22	Sander Pronk	Overlinking issues with 3d party tools fixed for autotools.	commit \| commitdiff \| tree
2010-07-21	Sander Pronk	Removed reference to orig.h in thread_mpi Makefile.am	commit \| commitdiff \| tree
2010-07-21	Sander Pronk	thread_mpi header files are now in sync with source...	commit \| commitdiff \| tree
2010-07-20	Sander Pronk	Small C syntax fix.	commit \| commitdiff \| tree
2010-07-06	Sander Pronk	Minor Windows thread fixes.	commit \| commitdiff \| tree
2010-07-05	Sander Pronk	Added option to ingore fsync failures.	commit \| commitdiff \| tree
2010-07-05	Sander Pronk	More thread_mpi fixes.	commit \| commitdiff \| tree
2010-07-05	Sander Pronk	Added missing include files in thread_mpi	commit \| commitdiff \| tree
2010-07-05	Sander Pronk	Fixed thread_mpi header installs.	commit \| commitdiff \| tree
2010-07-05	Sander Pronk	Fixed header files to be able to link 3d party code...	commit \| commitdiff \| tree
2010-07-02	Sander Pronk	Fixed missing prototype in genborn.c	commit \| commitdiff \| tree
2010-07-02	Sander Pronk	SSE fix for incorrect cast; fixes bug 441.	commit \| commitdiff \| tree
2010-07-02	Sander Pronk	more cflags.	commit \| commitdiff \| tree
2010-07-02	Sander Pronk	more cflags.	commit \| commitdiff \| tree
2010-07-01	Sander Pronk	Added pathscale cflags.	commit \| commitdiff \| tree
2010-07-01	Sander Pronk	Automatic CFLAGS in CMake for PGI, xlc compilers.	commit \| commitdiff \| tree
2010-07-01	Sander Pronk	More thread safety fixes in gmxlib.	commit \| commitdiff \| tree
2010-06-30	Sander Pronk	Now sets the right FLAGS variables with CMake.	commit \| commitdiff \| tree
2010-06-30	Sander Pronk	Streamlined CFLAGS testing in cmake.	commit \| commitdiff \| tree
2010-06-30	Sander Pronk	Added test for MSVC _aligned_malloc.	commit \| commitdiff \| tree
2010-06-30	Sander Pronk	C90 fixes in qm_orca.c, fixed line endings to UNIX...	commit \| commitdiff \| tree
2010-06-29	Sander Pronk	Bug fix for the previous commit	commit \| commitdiff \| tree
2010-06-29	Sander Pronk	Simplified aligned mallocs and frees.	commit \| commitdiff \| tree
2010-06-29	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-29	Sander Pronk	Made aligned_malloc thread safe.	commit \| commitdiff \| tree
2010-06-27	Sander Pronk	minor thread mpi fix for C++.	commit \| commitdiff \| tree
2010-06-24	Sander Pronk	XDR file I/O is now thread safe.	commit \| commitdiff \| tree
2010-06-22	Sander Pronk	More C90 fixes in membed.	commit \| commitdiff \| tree
2010-06-22	Sander Pronk	C90 fixes.	commit \| commitdiff \| tree
2010-06-22	Sander Pronk	vmdio error message fix.	commit \| commitdiff \| tree
2010-06-22	Sander Pronk	Most (if not all) file operations are now thread safe.	commit \| commitdiff \| tree
2010-06-15	Sander Pronk	Fixed return values for MPI_Comm_compare in thread_mpi.	commit \| commitdiff \| tree
2010-06-14	Sander Pronk	Added MPI_Comm_compare() to thread_mpi.	commit \| commitdiff \| tree
2010-06-12	Sander Pronk	More C90 pedantry.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Fixed another batch of // comments.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Removed references to MPI_Wtime() for when MPI is not...	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Pointer arithmetic bug fix in mshift.c	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Fixed an allocation error during thread spawns.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Automatic C flags for icc with cmake.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	x86 assembly fix in thread sync atomics.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Merge branch 'threadspawn'	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Cleaned up code that determines thread number.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Removed -std=gnu99 from CXXFLAGS for C++.	commit \| commitdiff \| tree
2010-06-11	Sander Pronk	Number of threads is now also determined by system...	commit \| commitdiff \| tree
2010-06-10	Sander Pronk	cmake counterpart to David's binary renamings.	commit \| commitdiff \| tree
2010-06-09	Sander Pronk	cmake bug fixes: now compiles with cmake 2.6.0.	commit \| commitdiff \| tree
2010-06-09	Sander Pronk	Automatic compiler flags assembly/sse kernels with...	commit \| commitdiff \| tree
2010-06-06	Sander Pronk	Previous checkpoint's won't be overwritten by newer...	commit \| commitdiff \| tree
2010-06-03	Sander Pronk	Checkpointing is now slightly more reliably done to...	commit \| commitdiff \| tree
2010-06-03	Sander Pronk	Bug fixes - now compiles on Windows.	commit \| commitdiff \| tree
2010-06-01	Sander Pronk	Fixed warnings, including some that were almost certainly...	commit \| commitdiff \| tree
2010-05-31	Sander Pronk	Removed 'inline' keyword for xlc on linux atomics.	commit \| commitdiff \| tree
2010-05-16	Sander Pronk	Fixed further build issues in geminate.c	commit \| commitdiff \| tree
2010-05-14	Sander Pronk	CMake fixes.	commit \| commitdiff \| tree
2010-05-14	Sander Pronk	Simplified error check for fsync().	commit \| commitdiff \| tree
2010-05-13	Sander Pronk	fsync() return value is checked.	commit \| commitdiff \| tree
2010-05-13	Sander Pronk	Turned off fsync for FAHCORE.	commit \| commitdiff \| tree
2010-05-13	Sander Pronk	Checkpoints now call fsync() on all open output files.	commit \| commitdiff \| tree
2010-05-12	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-12	Sander Pronk	Now does something useful with the USR1 signal.	commit \| commitdiff \| tree
2010-05-11	Sander Pronk	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-11	Sander Pronk	Further changes to the signal handling.	commit \| commitdiff \| tree
2010-05-10	Sander Pronk	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-05-10	Sander Pronk	Made gmx_tune_pme work with threaded mdrun.	commit \| commitdiff \| tree
2010-05-10	Sander Pronk	openmm fix for last commit	commit \| commitdiff \| tree
2010-05-10	Sander Pronk	Cleaned up signal handling code.	commit \| commitdiff \| tree
2010-05-10	Sander Pronk	Restored proper signal handling when PME nodes are...	commit \| commitdiff \| tree
2010-05-07	Sander Pronk	Fixed an uninitialized variable in pme.c (solve_pme_yzx).	commit \| commitdiff \| tree
2010-05-04	Sander Pronk	cmake equivalent to previous commit.	commit \| commitdiff \| tree
2010-05-04	Sander Pronk	Added check for new compiler option in gcc 4.5 to control...	commit \| commitdiff \| tree
2010-04-27	Sander Pronk	thread_mpi memory usage is now less excessive	commit \| commitdiff \| tree
2010-04-12	Sander Pronk	Fixed g_msd to print results with significant digits...	commit \| commitdiff \| tree
2010-04-02	Sander Pronk	Cleaned up the mdrun/main.c thread code a little more.	commit \| commitdiff \| tree
2010-04-02	Sander Pronk	Fixed checkpoint continuation bug for thread-parallel...	commit \| commitdiff \| tree
2010-04-01	Sander Pronk	Changed/fixed g_msd to remove the center of mass motion...	commit \| commitdiff \| tree
2010-03-25	Sander Pronk	Fixed a potential memory coherence issue with thread...	commit \| commitdiff \| tree
2010-03-22	Sander Pronk	Clearer thread error message.	commit \| commitdiff \| tree
2010-03-21	Sander Pronk	Auto-cancels threads for non-parallel integrators.	commit \| commitdiff \| tree
2010-03-19	Sander Pronk	Added makefile.am to install charmm force field data.	commit \| commitdiff \| tree
2010-03-17	Sander Pronk	Fixed potential race condition in mutex/cond_var/barrier...	commit \| commitdiff \| tree
2010-03-15	Sander Pronk	Some windows fixes in thread_mpi	commit \| commitdiff \| tree
2010-03-15	Sander Pronk	Now auto-detects the number of hardware threads and...	commit \| commitdiff \| tree
2010-03-07	Sander Pronk	Fixed MPI reduce ops MPI_MAX and MPI_MIN for thread_mpi.	commit \| commitdiff \| tree
2010-03-05	Sander Pronk	Re-fixed small bug in genversion.sh again.	commit \| commitdiff \| tree
2010-03-05	Sander Pronk	Merge branch 'master' of git@git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-03-05	Sander Pronk	Small bug fix in genversion.sh	commit \| commitdiff \| tree
2010-03-04	Sander Pronk	Fixed some remaining oenv issues.	commit \| commitdiff \| tree
2010-03-02	Sander	Separated oenv stuff into separae source files, added...	commit \| commitdiff \| tree
2010-03-02	Sander	Added an output_env_init_default with reasonable default...	commit \| commitdiff \| tree
2010-03-01	Sander	output_env_init is exported to allow non parse_std_args...	commit \| commitdiff \| tree
2009-07-06	Sander Pronk	more const-correctness fixes	commit \| commitdiff \| tree
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