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Make gmx_multisim_t a C++ object
2019-09-11
Mark Abraha
m
M
a
ke g
m
x_
m
ultisim_
t
a C+
+
object
commit
|
commitdiff
|
tree
2019-09-10
Mark Abr
a
ham
Avo
i
d
w
arning in no
-
mpi build
commit
|
commitdiff
|
tree
2019-09-10
Artem Zhmurov
Making
D
evic
e
Buff
e
r
availibl
e
in
n
on-
G
PU b
u
ilds
commit
|
commitdiff
|
tree
2019-09-10
Paul Bauer
A
d
d i
n
d
ication
on how
to e
n
able ImageMagick convert
commit
|
commitdiff
|
tree
2019-09-09
Sz
i
lárd Páll
Assert
the types
o
f
O
penCL kernels arg
u
ments
commit
|
commitdiff
|
tree
2019-08-25
A
r
tem Zhmu
r
ov
Make use
o
f
recent changes to prepa
r
eKernelA
r
guments
.
.
.
commit
|
commitdiff
|
tree
2019-08-25
Arte
m
Zhmu
r
ov
Misceleneous
i
mprovemen
t
s to the Leap Frog t
e
sts
commit
|
commitdiff
|
tree
2019-08-20
Mark Abr
a
h
a
m
App
l
y cl
a
ng-t
i
dy
-
8 rea
d
abilit
y
-u
p
perca
s
e-literal-suffix
commit
|
commitdiff
|
tree
2019-08-20
Mark Abraham
Use
po
t
ential-shift
a
s defau
l
t modifi
e
r
commit
|
commitdiff
|
tree
2019-08-09
B
e
rk
H
ess
Move bond
e
d function table
i
n
t
o
bo
n
ded
.
cpp
commit
|
commitdiff
|
tree
2019-08-08
M
a
rk
A
braham
Initialize gmx_
e
kindata_t and t_vcm properly
commit
|
commitdiff
|
tree
2019-08-06
Artem Zhmurov
Fix for cmake lists in mdlib
t
est
s
commit
|
commitdiff
|
tree
2019-07-31
Artem Zhmurov
C
h
a
n
ge
the file
structure in c
o
nstraints tests
commit
|
commitdiff
|
tree
2019-07-31
Sz
i
lár
d
Páll
Store wcycl
e
pointer in nonbo
n
ded_verlet_t
commit
|
commitdiff
|
tree
2019-07-26
Artem Z
h
m
urov
Remove PImpl scaffolding from CU
D
A vers
i
on
o
f
SETTLE
commit
|
commitdiff
|
tree
2019-07-05
Kevin Boyd
Ch
a
nge err
o
r message when at
t
empting to offload t
o
.
.
.
commit
|
commitdiff
|
tree
2019-07-05
Artem Zhmurov
Re
m
ove
P
Impl scaffolding from CUDA
v
e
rsion
o
f LINCS
commit
|
commitdiff
|
tree
2019-07-04
Artem Zhmu
r
ov
U
s
e rea
l
locateDevi
c
eBuffer(
.
.
.
) in CU
D
A v
e
r
sion of
.
.
.
commit
|
commitdiff
|
tree
2019-07-03
Ar
t
em Zhmu
r
ov
Early exit
for CUDA ve
r
sions of SETTLE and LINCS
commit
|
commitdiff
|
tree
2019-07-03
Artem
Z
hmurov
Me
m
ory managem
e
nt fixes in
CUDA version of LINCS
commit
|
commitdiff
|
tree
2019-06-28
Szilárd Páll
Separate CPU
NB kernel
a
n
d
b
uffer clear
i
ng subcount
e
rs
commit
|
commitdiff
|
tree
2019-06-28
Magnus Lundborg
F
u
sed GPU bond
e
d ker
n
els
commit
|
commitdiff
|
tree
2019-06-18
Ar
t
em Zhm
u
rov
Combine CUDA Leap-
F
rog, LINCS and SETTLE
.
I
.
commit
|
commitdiff
|
tree
2019-05-24
Artem Z
h
mu
r
ov
Cl
a
rify which of
t
he main energy
terms are
p
r
inted
.
commit
|
commitdiff
|
tree
2019-05-13
Paul Bauer
Fix
m
ath
formatting in
refe
r
ence
man
u
al
commit
|
commitdiff
|
tree
2019-05-12
Art
e
m Z
h
murov
CUDA v
e
rsion
o
f Leap-F
r
og integrator
w
i
th
b
asic
tests
commit
|
commitdiff
|
tree
2019-05-06
Mark Abraham
Improve how mdrun -no
a
ppend names out
p
ut files
commit
|
commitdiff
|
tree
2019-05-02
Artem
Zhmurov
Use
t
est
w
ith
p
arame
t
ers for EnergyO
u
tput
commit
|
commitdiff
|
tree
2019-04-30
Artem
Zhmurov
CUD
A
version of SETTLE algorith
m
with basic tests
commit
|
commitdiff
|
tree
2019-04-29
Ar
t
em Zhmur
o
v
Fix fo
r
the CUDA v
e
rsion
o
f
L
I
NCS
commit
|
commitdiff
|
tree
2019-04-28
Art
e
m Zhmurov
CUDA version of L
I
NCS co
n
straints
.
commit
|
commitdiff
|
tree
2019-04-04
Carsten
Kutzner
Early exit from m
d
r
u
n if group
s
cheme is detecte
d
in
.
.
.
commit
|
commitdiff
|
tree
2019-04-04
Artem Z
h
murov
Remove i
s
Press
u
reCoup
l
ingS
t
ep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-04-04
Ar
t
em Zhmurov
Remove isTemperatureCouplingStep(
.
.
.
)
commit
|
commitdiff
|
tree
2019-03-13
Arte
m
Zhmu
r
ov
Basic routin
e
s to han
d
le peri
o
di
c
bo
u
ndary
.
commit
|
commitdiff
|
tree
2019-02-19
Art
e
m Zhmu
r
ov
PBC setu
p
for GPU i
s
m
o
ved
i
nt
o
pbcutils
.
commit
|
commitdiff
|
tree
2019-02-13
Art
e
m
Zhm
u
rov
I
g
nore Visual Studio C
o
de me
t
ad
a
ta
.
commit
|
commitdiff
|
tree